Wall clock time and date at job start Tue Mar 31 2020 23:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 109.58076 * 2 1 4 4 C 1.53189 * 109.58556 * 239.71345 * 2 1 3 5 5 C 1.53037 * 109.31226 * 185.57428 * 4 2 1 6 6 C 1.53040 * 109.53535 * 61.36799 * 5 4 2 7 7 H 1.09005 * 109.49908 * 58.61732 * 6 5 4 8 8 N 1.46506 * 109.50000 * 178.68049 * 6 5 4 9 9 C 1.34767 * 120.00147 * 204.93357 * 8 6 5 10 10 O 1.21555 * 120.00297 * 0.02562 * 9 8 6 11 11 C 1.47866 * 119.99881 * 179.97438 * 9 8 6 12 12 C 1.40637 * 120.25989 * 0.02869 * 11 9 8 13 13 N 1.30861 * 121.65268 * 179.38065 * 12 11 9 14 14 C 1.33593 * 121.58402 * 0.92226 * 13 12 11 15 15 C 1.40638 * 121.63162 * 179.06226 * 14 13 12 16 16 N 1.31153 * 120.03969 * 180.02562 * 15 14 13 17 17 C 1.32494 * 122.89161 * 359.97438 * 16 15 14 18 18 C 1.36313 * 121.70877 * 0.02660 * 17 16 15 19 19 C 1.40599 * 118.65014 * 0.24747 * 18 17 16 20 20 C 1.38991 * 120.26154 * 180.02562 * 11 9 8 21 21 C 1.53195 * 109.34057 * 298.65005 * 6 5 4 22 22 N 1.46926 * 109.58491 * 120.42431 * 2 1 3 23 23 C 1.36939 * 120.63222 * 353.40024 * 22 2 1 24 24 H 1.07990 * 119.99955 * 29.01362 * 23 22 2 25 25 C 1.38809 * 119.99749 * 209.01707 * 23 22 2 26 26 N 1.31626 * 120.00052 * 15.01257 * 25 23 22 27 27 Si 1.86806 * 119.99993 * 195.01517 * 25 23 22 28 28 H 1.48497 * 109.47047 * 89.99791 * 27 25 23 29 29 H 1.48498 * 109.47053 * 210.00104 * 27 25 23 30 30 H 1.48497 * 109.46633 * 330.00022 * 27 25 23 31 31 H 1.09005 * 109.47116 * 180.28438 * 1 2 3 32 32 H 1.09004 * 109.46857 * 300.28555 * 1 2 3 33 33 H 1.08993 * 109.47073 * 60.28621 * 1 2 3 34 34 H 1.09005 * 109.49276 * 65.62996 * 4 2 1 35 35 H 1.08991 * 109.50090 * 305.52988 * 4 2 1 36 36 H 1.09000 * 109.46250 * 301.35090 * 5 4 2 37 37 H 1.08998 * 109.45123 * 181.37980 * 5 4 2 38 38 H 0.97000 * 119.99563 * 24.93940 * 8 6 5 39 39 H 1.07992 * 119.16925 * 359.97077 * 12 11 9 40 40 H 1.08003 * 119.98035 * 359.97438 * 15 14 13 41 41 H 1.08000 * 119.14870 * 179.97438 * 17 16 15 42 42 H 1.08002 * 120.67539 * 179.97438 * 18 17 16 43 43 H 1.08004 * 121.10905 * 0.04350 * 20 11 9 44 44 H 1.08998 * 109.58644 * 174.40594 * 21 6 5 45 45 H 1.08999 * 109.58530 * 294.83313 * 21 6 5 46 46 H 0.97004 * 119.99701 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7279 -1.2463 5 6 3.5675 -0.8465 -1.1712 6 6 3.9569 -1.6657 0.0614 7 1 3.4988 -2.6530 0.0017 8 7 5.4143 -1.8055 0.1153 9 6 5.9677 -2.8483 0.7653 10 8 5.2577 -3.6733 1.3065 11 6 7.4386 -2.9896 0.8191 12 6 8.2653 -2.0386 0.1945 13 7 9.5700 -2.1305 0.2353 14 6 10.1811 -3.1426 0.8572 15 6 11.5829 -3.2527 0.8850 16 7 12.1502 -4.2599 1.5046 17 6 11.4587 -5.2057 2.1234 18 6 10.0960 -5.1921 2.1554 19 6 9.4169 -4.1455 1.5073 20 6 8.0151 -4.0632 1.4875 21 6 3.4650 -0.9492 1.3230 22 7 2.0226 -0.7010 1.1936 23 6 1.1537 -1.1158 2.1674 24 1 0.1361 -1.3700 1.9104 25 6 1.5810 -1.2095 3.4848 26 7 2.7043 -0.6317 3.8550 27 14 0.5619 -2.1555 4.7322 28 1 0.9960 -3.5755 4.7512 29 1 0.7527 -1.5615 6.0798 30 1 -0.8730 -2.0815 4.3572 31 1 -0.3633 -1.0277 0.0051 32 1 -0.3633 0.5183 0.8875 33 1 -0.3633 0.5093 -0.8925 34 1 1.7660 -0.1641 -2.1370 35 1 1.6030 -1.7237 -1.2934 36 1 4.0061 0.1488 -1.0991 37 1 3.9376 -1.3423 -2.0685 38 1 5.9809 -1.1473 -0.3168 39 1 7.8120 -1.2067 -0.3238 40 1 12.1926 -2.5079 0.3952 41 1 11.9884 -6.0086 2.6144 42 1 9.5491 -5.9720 2.6644 43 1 7.4054 -4.8091 1.9757 44 1 3.6517 -1.5756 2.1952 45 1 3.9902 -0.0005 1.4326 46 1 3.0026 -0.6969 4.7757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071685752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:55 Heat of formation + Delta-G solvation = 52.736664 kcal Electronic energy + Delta-G solvation = -29048.817708 eV Core-core repulsion = 25131.910859 eV Total energy + Delta-G solvation = -3916.906849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.51083 -39.72878 -38.19931 -37.48981 -34.64120 -33.94154 -32.89410 -32.13444 -30.69323 -30.51290 -29.84755 -26.49126 -25.45242 -24.85091 -24.60734 -22.86409 -22.34548 -21.38035 -20.43317 -19.45321 -18.70575 -18.09427 -17.64838 -16.51363 -16.42111 -15.64918 -15.34234 -15.25400 -15.05062 -14.51581 -14.36796 -14.14604 -13.83027 -13.74828 -13.49243 -13.39090 -13.37924 -12.96041 -12.76986 -12.68521 -12.42256 -11.91416 -11.50851 -11.16465 -11.09719 -10.91157 -10.74797 -10.59621 -10.44061 -10.32555 -10.28693 -10.07118 -9.97188 -9.74157 -9.59635 -9.50336 -9.45568 -8.80268 -8.65203 -8.44547 -6.64720 -5.76454 -3.21084 -0.21050 0.19196 1.46380 2.37106 3.19504 3.29963 3.41287 3.47437 3.48224 3.74533 3.80290 4.05334 4.13877 4.34153 4.40155 4.46160 4.52325 4.78791 4.91037 5.15372 5.22960 5.29764 5.33119 5.37921 5.45638 5.53156 5.59454 5.62736 5.77439 5.92077 5.99926 6.05757 6.19414 6.23237 6.26183 6.35606 6.41033 6.43898 6.59077 6.67672 6.81221 7.01372 7.09641 7.26598 7.31968 7.58785 7.69822 7.72366 7.84590 8.38865 8.48048 9.22033 9.86211 10.40922 11.31527 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014725 B = 0.002847 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.094900 B = 9833.632889 C =11200.899538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.165 3.835 3 H 0.026 0.974 4 C -0.126 4.126 5 C -0.117 4.117 6 C 0.116 3.884 7 H 0.084 0.916 8 N -0.710 5.710 9 C 0.556 3.444 10 O -0.521 6.521 11 C -0.163 4.163 12 C 0.162 3.838 13 N -0.459 5.459 14 C 0.079 3.921 15 C 0.162 3.838 16 N -0.470 5.470 17 C 0.070 3.930 18 C -0.131 4.131 19 C -0.085 4.085 20 C 0.004 3.996 21 C 0.167 3.833 22 N -0.583 5.583 23 C -0.253 4.253 24 H 0.071 0.929 25 C 0.006 3.994 26 N -0.901 5.901 27 Si 0.901 3.099 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.279 1.279 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.038 0.962 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.392 0.608 39 H 0.167 0.833 40 H 0.174 0.826 41 H 0.160 0.840 42 H 0.145 0.855 43 H 0.159 0.841 44 H 0.096 0.904 45 H 0.018 0.982 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.679 -4.262 -9.447 17.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.011 3.989 7 H 0.103 0.897 8 N -0.361 5.361 9 C 0.341 3.659 10 O -0.397 6.397 11 C -0.169 4.169 12 C -0.013 4.013 13 N -0.167 5.167 14 C -0.044 4.044 15 C -0.011 4.011 16 N -0.179 5.179 17 C -0.073 4.073 18 C -0.152 4.152 19 C -0.092 4.092 20 C -0.022 4.022 21 C 0.040 3.960 22 N -0.306 5.306 23 C -0.382 4.382 24 H 0.089 0.911 25 C -0.193 4.193 26 N -0.545 5.545 27 Si 0.731 3.269 28 H -0.213 1.213 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.226 0.774 39 H 0.184 0.816 40 H 0.191 0.809 41 H 0.177 0.823 42 H 0.163 0.837 43 H 0.177 0.823 44 H 0.114 0.886 45 H 0.036 0.964 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.705 -4.446 -9.151 17.881 hybrid contribution -1.599 -0.659 0.959 1.978 sum 13.106 -5.105 -8.192 16.277 Atomic orbital electron populations 1.21805 0.95968 1.01449 1.00197 1.20497 0.93113 0.93573 0.87013 0.95684 1.22046 0.94183 1.01380 0.98978 1.21689 0.97556 0.99680 0.96592 1.22099 0.77010 1.01175 0.98618 0.89748 1.46013 1.09056 1.26078 1.54930 1.17860 0.86263 0.82287 0.79523 1.90845 1.62374 1.42038 1.44440 1.21293 0.95624 0.97861 1.02143 1.23189 0.88635 0.96274 0.93187 1.67881 1.11116 1.21195 1.16509 1.20043 0.96062 0.91760 0.96540 1.23128 0.89551 0.94799 0.93666 1.67450 1.41257 1.01988 1.07236 1.22288 0.91332 0.96892 0.96759 1.22021 0.95958 0.98095 0.99119 1.18962 0.94292 0.96698 0.99289 1.21970 0.92644 0.95786 0.91846 1.21103 0.83651 0.96998 0.94223 1.44023 1.02603 1.64597 1.19409 1.19158 0.94719 1.38178 0.86143 0.91123 1.25078 0.97745 0.99450 0.97031 1.69997 1.23329 1.44322 1.16851 0.86316 0.79766 0.80025 0.80824 1.21347 1.21818 1.20418 0.92771 0.92011 0.94318 0.92579 0.92033 0.92130 0.92953 0.77372 0.81569 0.80897 0.82277 0.83677 0.82317 0.88609 0.96408 0.93735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 7.94 37.16 0.30 -2.20 16 2 C 0.16 3.25 3.50 -67.60 -0.24 3.02 16 3 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.04 5.37 -26.61 -0.14 -2.18 16 5 C -0.12 -1.76 5.35 -26.69 -0.14 -1.90 16 6 C 0.12 2.12 2.60 -67.81 -0.18 1.94 16 7 H 0.08 1.77 7.58 -51.93 -0.39 1.37 16 8 N -0.71 -10.67 5.03 -54.62 -0.27 -10.94 16 9 C 0.56 9.15 7.74 -12.32 -0.10 9.06 16 10 O -0.52 -10.88 16.05 5.32 0.09 -10.79 16 11 C -0.16 -2.15 5.89 -104.77 -0.62 -2.76 16 12 C 0.16 1.81 10.68 -17.06 -0.18 1.63 16 13 N -0.46 -5.44 10.33 -10.65 -0.11 -5.55 16 14 C 0.08 0.93 6.62 -84.81 -0.56 0.37 16 15 C 0.16 1.67 11.25 -16.94 -0.19 1.47 16 16 N -0.47 -4.95 10.28 -13.11 -0.13 -5.09 16 17 C 0.07 0.62 11.08 -17.96 -0.20 0.42 16 18 C -0.13 -1.20 9.88 -39.38 -0.39 -1.59 16 19 C -0.09 -0.98 5.75 -106.80 -0.61 -1.59 16 20 C 0.00 0.05 9.51 -38.48 -0.37 -0.31 16 21 C 0.17 3.90 4.86 -3.71 -0.02 3.88 16 22 N -0.58 -14.09 2.99 -164.77 -0.49 -14.58 16 23 C -0.25 -6.77 8.61 -15.06 -0.13 -6.90 16 24 H 0.07 1.85 6.20 -52.49 -0.33 1.52 16 25 C 0.01 0.16 4.96 -17.43 -0.09 0.08 16 26 N -0.90 -26.26 11.14 55.49 0.62 -25.64 16 27 Si 0.90 22.08 29.58 -169.99 -5.03 17.05 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 30 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 31 H 0.05 1.01 7.40 -51.93 -0.38 0.62 16 32 H 0.06 1.22 7.66 -51.93 -0.40 0.83 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.39 4.41 6.63 -40.82 -0.27 4.14 16 39 H 0.17 1.37 6.37 -52.49 -0.33 1.03 16 40 H 0.17 1.37 8.06 -52.48 -0.42 0.95 16 41 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.16 1.89 7.71 -52.48 -0.40 1.49 16 44 H 0.10 2.66 6.06 -51.93 -0.31 2.34 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 373.41 15.07 5.63 5.63 Total: -1.00 -33.36 373.41 -9.75 -43.11 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -6.19 Total: 4.37 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -3.85 Total: 2.43 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: -0.39 Total: -61.80 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.36 -9.75 -43.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071685752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.849 kcal (2) G-P(sol) polarization free energy of solvation -33.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds