Wall clock time and date at job start Wed Apr 1 2020 00:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 110.88969 * 2 1 4 4 C 1.54912 * 111.00332 * 236.12251 * 2 1 3 5 5 N 1.47426 * 104.83261 * 204.91674 * 4 2 1 6 6 C 1.36941 * 125.64875 * 203.86480 * 5 4 2 7 7 H 1.08005 * 119.99780 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99913 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99926 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99719 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47311 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47271 * 120.00121 * 10 8 6 13 13 H 1.48501 * 109.46665 * 239.99715 * 10 8 6 14 14 C 1.47024 * 108.70449 * 24.12870 * 5 4 2 15 15 C 1.54327 * 107.26774 * 358.94057 * 14 5 4 16 16 H 1.08996 * 110.72159 * 96.17410 * 15 14 5 17 17 N 1.46504 * 110.87059 * 219.37229 * 15 14 5 18 18 C 1.34772 * 119.99964 * 268.61146 * 17 15 14 19 19 O 1.21573 * 120.00003 * 0.02562 * 18 17 15 20 20 C 1.47735 * 120.00150 * 180.02562 * 18 17 15 21 21 C 1.41183 * 126.33695 * 180.02562 * 20 18 17 22 22 C 1.36684 * 105.44725 * 179.97438 * 21 20 18 23 23 C 1.48010 * 126.59089 * 180.02562 * 22 21 20 24 24 C 1.39482 * 120.13659 * 359.72551 * 23 22 21 25 25 C 1.37989 * 119.85928 * 179.76811 * 24 23 22 26 26 C 1.38337 * 120.13378 * 0.50879 * 25 24 23 27 27 C 1.38344 * 120.27857 * 359.74683 * 26 25 24 28 28 C 1.37984 * 120.13686 * 359.97438 * 27 26 25 29 29 N 1.36365 * 106.80773 * 359.97438 * 22 21 20 30 30 H 0.97006 * 125.00687 * 180.02562 * 29 22 21 31 31 N 1.28452 * 109.98328 * 359.72728 * 29 22 21 32 32 H 1.09002 * 109.46921 * 182.42116 * 1 2 3 33 33 H 1.09003 * 109.47131 * 302.42637 * 1 2 3 34 34 H 1.09001 * 109.47089 * 62.42194 * 1 2 3 35 35 H 1.09002 * 110.36496 * 86.08089 * 4 2 1 36 36 H 1.08995 * 110.46379 * 323.80457 * 4 2 1 37 37 H 0.97001 * 119.99407 * 180.02562 * 9 8 6 38 38 H 1.08995 * 109.88316 * 118.35549 * 14 5 4 39 39 H 1.09002 * 109.88101 * 239.52444 * 14 5 4 40 40 H 0.96997 * 119.99769 * 88.60981 * 17 15 14 41 41 H 1.07998 * 127.27217 * 0.02562 * 21 20 18 42 42 H 1.07996 * 120.07300 * 0.02562 * 24 23 22 43 43 H 1.07994 * 119.93126 * 180.24878 * 25 24 23 44 44 H 1.08005 * 119.86310 * 179.76257 * 26 25 24 45 45 H 1.08003 * 119.93211 * 180.02562 * 27 26 25 46 46 H 1.07998 * 120.07267 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8061 -1.2007 5 7 3.4271 -1.2428 -0.7739 6 6 4.4626 -1.5703 -1.6080 7 1 4.3304 -1.5193 -2.6787 8 6 5.6818 -1.9688 -1.0773 9 7 5.8427 -2.0313 0.2275 10 14 7.0946 -2.4148 -2.2151 11 1 6.6602 -2.2625 -3.6270 12 1 8.2459 -1.5148 -1.9511 13 1 7.5007 -3.8223 -1.9716 14 6 3.4674 -1.2745 0.6954 15 6 2.0861 -0.8085 1.2018 16 1 1.4468 -1.6638 1.4202 17 7 2.2247 0.0475 2.3827 18 6 2.1958 -0.4955 3.6158 19 8 2.0552 -1.6958 3.7482 20 6 2.3349 0.3677 4.8066 21 6 2.3242 -0.0565 6.1532 22 6 2.4835 1.0809 6.8944 23 6 2.5392 1.1713 8.3707 24 6 2.4185 0.0194 9.1479 25 6 2.4760 0.1097 10.5236 26 6 2.6424 1.3407 11.1324 27 6 2.7575 2.4875 10.3672 28 6 2.7072 2.4096 8.9905 29 7 2.5823 2.1159 6.0121 30 1 2.7023 3.0467 6.2574 31 7 2.4993 1.6759 4.8081 32 1 -0.3633 -1.0268 0.0434 33 1 -0.3633 0.5511 0.8675 34 1 -0.3633 0.4758 -0.9109 35 1 2.1560 -0.1711 -2.0838 36 1 1.4524 -1.6697 -1.4051 37 1 6.6948 -2.3094 0.5983 38 1 3.6650 -2.2899 1.0390 39 1 4.2426 -0.6002 1.0596 40 1 2.3373 1.0051 2.2770 41 1 2.2143 -1.0663 6.5200 42 1 2.2844 -0.9417 8.6738 43 1 2.3867 -0.7819 11.1263 44 1 2.6830 1.4068 12.2097 45 1 2.8877 3.4456 10.8483 46 1 2.7967 3.3055 8.3941 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080080228.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:11 Heat of formation + Delta-G solvation = 64.017079 kcal Electronic energy + Delta-G solvation = -28249.971743 eV Core-core repulsion = 24333.554049 eV Total energy + Delta-G solvation = -3916.417694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.71520 -40.83743 -39.85257 -39.05280 -35.65888 -34.40468 -33.67633 -33.13713 -32.16536 -31.77152 -30.08037 -29.43860 -27.40616 -25.95736 -24.72524 -24.25077 -23.37331 -22.08625 -21.88294 -21.56568 -20.67046 -19.48529 -18.88562 -18.16304 -17.46208 -17.14659 -16.94901 -16.80514 -16.06049 -15.77526 -15.72506 -15.55610 -15.37147 -14.78585 -14.71729 -14.50632 -14.24934 -14.10717 -14.05802 -13.81670 -13.69774 -13.34010 -13.05261 -12.89380 -12.61271 -12.43026 -12.15137 -12.08925 -12.01355 -11.93221 -11.86162 -11.66582 -11.47333 -11.25791 -11.04827 -10.76298 -10.55388 -10.01034 -9.90399 -9.20739 -8.92650 -7.84346 -5.22536 -0.17391 0.45732 0.47265 1.35602 1.44026 1.46292 1.56733 1.69165 2.11000 2.32117 2.49461 2.92040 3.18780 3.33970 3.45609 3.59940 3.74717 3.83179 4.03223 4.05136 4.10351 4.16493 4.25932 4.37064 4.42491 4.50769 4.54122 4.62235 4.72062 4.75271 4.88765 4.94052 5.06139 5.07676 5.09073 5.17795 5.18420 5.28389 5.45040 5.47340 5.49885 5.50442 5.58951 5.60363 5.76715 5.93050 6.02480 6.16384 6.44157 6.75962 7.05626 7.16099 7.75424 8.39716 9.25152 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015464 B = 0.002295 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.221144 B =12197.254987 C =13239.806162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.094 4.094 3 H 0.089 0.911 4 C 0.133 3.867 5 N -0.627 5.627 6 C -0.239 4.239 7 H 0.091 0.909 8 C -0.074 4.074 9 N -0.954 5.954 10 Si 0.982 3.018 11 H -0.260 1.260 12 H -0.292 1.292 13 H -0.296 1.296 14 C 0.188 3.812 15 C 0.134 3.866 16 H 0.081 0.919 17 N -0.688 5.688 18 C 0.597 3.403 19 O -0.572 6.572 20 C -0.027 4.027 21 C -0.178 4.178 22 C 0.070 3.930 23 C -0.042 4.042 24 C -0.109 4.109 25 C -0.121 4.121 26 C -0.115 4.115 27 C -0.118 4.118 28 C -0.118 4.118 29 N -0.358 5.358 30 H 0.462 0.538 31 N -0.249 5.249 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.029 0.971 37 H 0.244 0.756 38 H -0.007 1.007 39 H 0.016 0.984 40 H 0.413 0.587 41 H 0.166 0.834 42 H 0.129 0.871 43 H 0.146 0.854 44 H 0.149 0.851 45 H 0.152 0.848 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.366 14.134 21.541 28.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.114 4.114 3 H 0.107 0.893 4 C 0.008 3.992 5 N -0.354 5.354 6 C -0.368 4.368 7 H 0.108 0.892 8 C -0.266 4.266 9 N -0.603 5.603 10 Si 0.810 3.190 11 H -0.183 1.183 12 H -0.219 1.219 13 H -0.223 1.223 14 C 0.062 3.938 15 C 0.028 3.972 16 H 0.099 0.901 17 N -0.338 5.338 18 C 0.383 3.617 19 O -0.449 6.449 20 C -0.186 4.186 21 C -0.206 4.206 22 C -0.055 4.055 23 C -0.044 4.044 24 C -0.129 4.129 25 C -0.138 4.138 26 C -0.133 4.133 27 C -0.136 4.136 28 C -0.136 4.136 29 N -0.076 5.076 30 H 0.311 0.689 31 N -0.087 5.087 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.011 0.989 39 H 0.034 0.966 40 H 0.250 0.750 41 H 0.183 0.817 42 H 0.147 0.853 43 H 0.164 0.836 44 H 0.167 0.833 45 H 0.170 0.830 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.197 14.098 20.809 27.516 hybrid contribution 1.341 -0.617 -0.009 1.476 sum -9.856 13.481 20.799 26.674 Atomic orbital electron populations 1.21646 0.91610 1.02293 1.03030 1.22547 0.97407 0.98844 0.92613 0.89265 1.21854 0.85190 0.95872 0.96244 1.44737 1.09667 1.79142 1.01862 1.19572 0.90087 1.37266 0.89858 0.89164 1.25775 1.00821 1.02527 0.97481 1.70260 1.24063 1.54782 1.11189 0.84947 0.78763 0.76717 0.78532 1.18349 1.21947 1.22288 1.21095 0.92451 0.96603 0.83666 1.22184 0.96853 0.93681 0.84488 0.90126 1.45606 1.72172 1.11614 1.04377 1.17247 0.75804 0.86231 0.82432 1.90767 1.51794 1.15766 1.86580 1.21590 1.11662 0.90645 0.94714 1.21839 1.08116 1.00159 0.90476 1.20006 1.06553 0.87397 0.91531 1.17971 1.04117 0.95601 0.86662 1.21377 0.99075 0.97796 0.94622 1.21408 0.99225 0.99370 0.93834 1.21676 0.97773 0.92233 1.01589 1.21415 0.99042 1.00093 0.93026 1.21370 1.00039 0.96104 0.96118 1.43542 1.51481 1.11014 1.01589 0.68856 1.73432 1.18278 1.12083 1.04899 0.92821 0.91597 0.90216 0.92484 0.95335 0.94723 0.98878 0.96630 0.74998 0.81664 0.85315 0.83642 0.83308 0.83027 0.84210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 9.30 71.98 0.67 -2.56 16 2 C -0.09 -3.17 3.27 -9.40 -0.03 -3.20 16 3 H 0.09 2.83 8.01 -2.38 -0.02 2.81 16 4 C 0.13 5.45 6.70 86.86 0.58 6.04 16 5 N -0.63 -33.76 3.39 -691.97 -2.35 -36.11 16 6 C -0.24 -13.86 10.28 84.03 0.86 -13.00 16 7 H 0.09 4.90 7.83 -2.91 -0.02 4.88 16 8 C -0.07 -4.40 5.49 84.86 0.47 -3.93 16 9 N -0.95 -61.43 10.31 21.65 0.22 -61.20 16 10 Si 0.98 47.72 29.55 68.60 2.03 49.74 16 11 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 12 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 13 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 14 C 0.19 10.23 5.13 86.73 0.44 10.68 16 15 C 0.13 5.53 2.78 46.18 0.13 5.66 16 16 H 0.08 3.52 7.42 -2.39 -0.02 3.50 16 17 N -0.69 -25.35 5.11 -439.88 -2.25 -27.60 16 18 C 0.60 23.53 7.83 86.75 0.68 24.21 16 19 O -0.57 -26.73 16.56 -3.95 -0.07 -26.80 16 20 C -0.03 -0.89 7.11 42.38 0.30 -0.59 16 21 C -0.18 -4.99 10.16 22.63 0.23 -4.76 16 22 C 0.07 1.51 6.98 40.67 0.28 1.79 16 23 C -0.04 -0.71 5.87 -20.08 -0.12 -0.82 16 24 C -0.11 -1.77 9.58 22.51 0.22 -1.55 16 25 C -0.12 -1.44 10.03 22.23 0.22 -1.22 16 26 C -0.11 -1.08 10.04 22.32 0.22 -0.86 16 27 C -0.12 -1.09 10.03 22.23 0.22 -0.87 16 28 C -0.12 -1.38 9.71 22.51 0.22 -1.16 16 29 N -0.36 -6.92 6.80 -48.51 -0.33 -7.25 16 30 H 0.46 4.90 8.08 -219.99 -1.78 3.12 16 31 N -0.25 -6.69 11.89 -48.34 -0.57 -7.26 16 32 H 0.05 1.39 8.11 -2.39 -0.02 1.37 16 33 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.03 1.15 8.04 -2.39 -0.02 1.13 16 37 H 0.24 15.31 8.31 -92.71 -0.77 14.54 16 38 H -0.01 -0.45 7.51 -2.39 -0.02 -0.47 16 39 H 0.02 0.94 7.27 -2.39 -0.02 0.92 16 40 H 0.41 13.20 8.28 -92.71 -0.77 12.43 16 41 H 0.17 4.44 7.39 -2.91 -0.02 4.42 16 42 H 0.13 2.06 7.10 -2.91 -0.02 2.04 16 43 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 44 H 0.15 0.64 8.06 -2.91 -0.02 0.62 16 45 H 0.15 0.59 8.06 -2.91 -0.02 0.57 16 46 H 0.14 0.91 7.19 -2.91 -0.02 0.88 16 Total: -1.00 -82.34 384.36 0.77 -81.58 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -1.52 Total: 21.07 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 5.60 Total: 13.83 kcal Atomic # 7 Polarization: -134.15 SS G_CDS: -5.28 Total: -139.43 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.07 Total: -26.80 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.74 kcal Total: -82.34 0.77 -81.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080080228.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.595 kcal (2) G-P(sol) polarization free energy of solvation -82.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds