Wall clock time and date at job start Wed Apr 1 2020 00:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.91734 * 2 1 4 4 C 1.54908 * 111.00134 * 236.09552 * 2 1 3 5 5 N 1.47423 * 104.83195 * 204.91371 * 4 2 1 6 6 C 1.36939 * 125.65000 * 204.16279 * 5 4 2 7 7 H 1.07999 * 120.00257 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00060 * 179.97438 * 6 5 4 9 9 N 1.31619 * 120.00021 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00161 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47211 * 59.99626 * 10 8 6 12 12 H 1.48493 * 109.47203 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.46705 * 299.99766 * 10 8 6 14 14 C 1.47025 * 108.70415 * 24.13322 * 5 4 2 15 15 C 1.54321 * 107.26963 * 358.93613 * 14 5 4 16 16 H 1.08999 * 110.72075 * 96.34632 * 15 14 5 17 17 N 1.46498 * 110.72382 * 219.44540 * 15 14 5 18 18 C 1.34774 * 120.00211 * 273.54811 * 17 15 14 19 19 O 1.21625 * 119.99494 * 0.02562 * 18 17 15 20 20 C 1.47283 * 120.00430 * 179.97438 * 18 17 15 21 21 C 1.37968 * 126.80678 * 0.15885 * 20 18 17 22 22 N 1.34160 * 107.88765 * 180.25536 * 21 20 18 23 23 H 0.96989 * 125.16271 * 179.71748 * 22 21 20 24 24 N 1.39772 * 109.67050 * 359.74627 * 22 21 20 25 25 C 1.31359 * 109.08426 * 359.97438 * 24 22 21 26 26 C 1.48296 * 126.51449 * 179.97438 * 25 24 22 27 27 C 1.39384 * 120.12346 * 144.75248 * 26 25 24 28 28 C 1.38004 * 119.86863 * 179.72354 * 27 26 25 29 29 C 1.38328 * 120.12970 * 0.52904 * 28 27 26 30 30 C 1.38326 * 120.24987 * 359.76807 * 29 28 27 31 31 C 1.38007 * 120.12794 * 359.95497 * 30 29 28 32 32 H 1.09004 * 109.46693 * 296.09717 * 1 2 3 33 33 H 1.08997 * 109.47156 * 56.09744 * 1 2 3 34 34 H 1.08999 * 109.47051 * 176.10111 * 1 2 3 35 35 H 1.09005 * 110.36851 * 86.08213 * 4 2 1 36 36 H 1.08995 * 110.46558 * 323.80079 * 4 2 1 37 37 H 0.97001 * 120.00311 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.87943 * 239.52131 * 14 5 4 39 39 H 1.08997 * 110.01252 * 118.42679 * 14 5 4 40 40 H 0.96995 * 119.99715 * 93.54179 * 17 15 14 41 41 H 1.07996 * 126.05627 * 359.96863 * 21 20 18 42 42 H 1.08004 * 120.06206 * 359.97001 * 27 26 25 43 43 H 1.08006 * 119.93209 * 180.27038 * 28 27 26 44 44 H 1.07991 * 119.87332 * 179.74134 * 29 28 27 45 45 H 1.07999 * 119.93869 * 179.97438 * 30 29 28 46 46 H 1.07995 * 120.06672 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4644 -1.5655 -1.6072 7 1 4.3338 -1.5102 -2.6779 8 6 5.6837 -1.9633 -1.0764 9 7 5.8428 -2.0311 0.2284 10 14 7.0990 -2.4024 -2.2139 11 1 7.4403 -1.2276 -3.0557 12 1 8.2818 -2.7914 -1.4049 13 1 6.6999 -3.5367 -3.0854 14 6 3.4675 -1.2742 0.6960 15 6 2.0862 -0.8079 1.2022 16 1 1.4479 -1.6632 1.4239 17 7 2.2287 0.0496 2.3815 18 6 2.3023 -0.5004 3.6097 19 8 2.2508 -1.7086 3.7390 20 6 2.4461 0.3616 4.7952 21 6 2.5164 1.7394 4.8118 22 7 2.6501 2.1299 6.0884 23 1 2.7266 3.0498 6.3860 24 7 2.6630 1.0096 6.9241 25 6 2.5392 -0.0739 6.1919 26 6 2.5070 -1.4725 6.6840 27 6 1.7001 -2.4177 6.0529 28 6 1.6786 -3.7191 6.5117 29 6 2.4474 -4.0837 7.6023 30 6 3.2453 -3.1484 8.2364 31 6 3.2792 -1.8454 7.7828 32 1 -0.3633 0.4521 0.9230 33 1 -0.3633 0.5732 -0.8529 34 1 -0.3633 -1.0253 -0.0699 35 1 2.1560 -0.1721 -2.0837 36 1 1.4525 -1.6704 -1.4043 37 1 6.6949 -2.3087 0.5994 38 1 4.2427 -0.5998 1.0598 39 1 3.6662 -2.2884 1.0423 40 1 2.2702 1.0131 2.2783 41 1 2.4761 2.3884 3.9495 42 1 1.0960 -2.1331 5.2041 43 1 1.0571 -4.4534 6.0207 44 1 2.4242 -5.1022 7.9604 45 1 3.8432 -3.4384 9.0877 46 1 3.9028 -1.1161 8.2783 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080218505.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:41 Heat of formation + Delta-G solvation = 69.081190 kcal Electronic energy + Delta-G solvation = -29328.453737 eV Core-core repulsion = 25412.255640 eV Total energy + Delta-G solvation = -3916.198097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.20893 -40.52986 -39.72799 -38.85367 -35.57911 -34.29742 -33.76712 -32.16173 -31.88795 -31.39632 -30.70083 -29.20251 -27.32092 -25.51506 -24.46215 -24.11273 -23.35822 -22.04430 -21.52178 -21.09350 -20.50950 -19.38407 -18.83792 -17.71246 -17.45117 -17.09078 -16.85853 -16.38216 -16.20278 -15.65961 -15.59222 -15.35226 -15.11395 -14.71218 -14.65684 -14.37604 -14.20498 -14.04661 -13.87340 -13.65031 -13.40828 -13.29765 -13.00447 -12.82713 -12.54406 -12.34803 -12.24165 -12.13693 -11.98685 -11.82546 -11.72327 -11.61093 -11.38638 -11.05118 -10.81192 -10.71111 -10.04590 -9.80070 -9.68799 -9.31397 -8.89630 -7.82151 -5.20223 0.03422 0.55396 0.58547 1.28939 1.44422 1.48543 1.54919 1.75014 2.26972 2.50740 2.51804 2.97182 3.31280 3.35763 3.63562 3.65751 3.80184 4.07066 4.11639 4.16278 4.17035 4.20941 4.32501 4.34547 4.42185 4.58437 4.62559 4.68925 4.76701 4.78779 4.92718 4.96583 5.11803 5.13288 5.18074 5.21602 5.30902 5.36626 5.47841 5.55351 5.58032 5.64363 5.69684 5.71237 5.86971 6.12141 6.19511 6.24525 6.42781 6.77301 7.09101 7.46076 7.79093 8.42524 9.26188 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010424 B = 0.003346 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.469270 B = 8366.195210 C = 9322.903534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 H 0.095 0.905 4 C 0.131 3.869 5 N -0.628 5.628 6 C -0.243 4.243 7 H 0.088 0.912 8 C -0.068 4.068 9 N -0.952 5.952 10 Si 0.978 3.022 11 H -0.271 1.271 12 H -0.299 1.299 13 H -0.277 1.277 14 C 0.190 3.810 15 C 0.143 3.857 16 H 0.072 0.928 17 N -0.697 5.697 18 C 0.584 3.416 19 O -0.572 6.572 20 C -0.313 4.313 21 C 0.143 3.857 22 N -0.445 5.445 23 H 0.463 0.537 24 N -0.303 5.303 25 C 0.155 3.845 26 C -0.054 4.054 27 C -0.069 4.069 28 C -0.144 4.144 29 C -0.108 4.108 30 C -0.136 4.136 31 C -0.101 4.101 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.023 0.977 37 H 0.243 0.757 38 H 0.015 0.985 39 H -0.014 1.014 40 H 0.411 0.589 41 H 0.239 0.761 42 H 0.126 0.874 43 H 0.134 0.866 44 H 0.150 0.850 45 H 0.152 0.848 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.974 10.488 12.853 20.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.111 4.111 3 H 0.114 0.886 4 C 0.006 3.994 5 N -0.354 5.354 6 C -0.372 4.372 7 H 0.106 0.894 8 C -0.261 4.261 9 N -0.601 5.601 10 Si 0.806 3.194 11 H -0.196 1.196 12 H -0.226 1.226 13 H -0.203 1.203 14 C 0.064 3.936 15 C 0.036 3.964 16 H 0.090 0.910 17 N -0.348 5.348 18 C 0.374 3.626 19 O -0.453 6.453 20 C -0.328 4.328 21 C -0.009 4.009 22 N -0.152 5.152 23 H 0.312 0.688 24 N -0.125 5.125 25 C -0.013 4.013 26 C -0.056 4.056 27 C -0.088 4.088 28 C -0.162 4.162 29 C -0.126 4.126 30 C -0.154 4.154 31 C -0.121 4.121 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.041 0.959 37 H 0.052 0.948 38 H 0.033 0.967 39 H 0.004 0.996 40 H 0.247 0.753 41 H 0.255 0.745 42 H 0.143 0.857 43 H 0.152 0.848 44 H 0.168 0.832 45 H 0.170 0.830 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.685 10.096 14.116 20.922 hybrid contribution 1.330 -0.118 -1.318 1.876 sum -10.355 9.978 12.798 19.250 Atomic orbital electron populations 1.21653 0.91689 1.02192 1.03089 1.22524 0.97231 0.98964 0.92382 0.88639 1.21871 0.85192 0.95777 0.96557 1.44728 1.09436 1.79218 1.02063 1.19482 0.90151 1.37717 0.89846 0.89421 1.25702 1.00673 1.02407 0.97309 1.70251 1.24077 1.54625 1.11147 0.85162 0.78276 0.78447 0.77528 1.19638 1.22567 1.20312 1.21088 0.92919 0.96367 0.83254 1.21978 0.96101 0.93548 0.84748 0.90965 1.45484 1.74446 1.10383 1.04489 1.17529 0.75241 0.87142 0.82728 1.90751 1.52163 1.16169 1.86168 1.21288 1.25193 0.93698 0.92650 1.23634 0.92736 0.94273 0.90235 1.45954 1.55909 1.09476 1.03887 0.68829 1.77248 1.25818 0.92352 1.17062 1.21962 0.96298 0.92699 0.90312 1.17931 1.00735 0.89229 0.97721 1.21560 0.97282 0.93277 0.96687 1.21349 1.01150 0.95899 0.97761 1.21598 0.95253 1.00710 0.95034 1.21353 1.00168 0.92470 1.01381 1.21352 0.98174 0.97517 0.95014 0.91088 0.90412 0.93254 0.92699 0.95902 0.94814 0.96676 0.99593 0.75253 0.74519 0.85676 0.84816 0.83207 0.83048 0.85325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.31 71.98 0.67 -2.12 16 2 C -0.09 -2.72 3.25 -9.40 -0.03 -2.75 16 3 H 0.10 2.53 8.00 -2.39 -0.02 2.51 16 4 C 0.13 5.11 6.70 86.85 0.58 5.69 16 5 N -0.63 -32.72 3.39 -692.00 -2.35 -35.07 16 6 C -0.24 -13.85 10.28 84.03 0.86 -12.99 16 7 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 8 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 9 N -0.95 -60.57 10.31 21.65 0.22 -60.35 16 10 Si 0.98 46.99 29.55 68.60 2.03 49.01 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 14 C 0.19 9.90 5.12 86.73 0.44 10.34 16 15 C 0.14 5.35 2.70 46.18 0.12 5.48 16 16 H 0.07 2.96 7.59 -2.39 -0.02 2.94 16 17 N -0.70 -21.27 5.12 -440.31 -2.25 -23.53 16 18 C 0.58 20.46 7.67 86.62 0.66 21.13 16 19 O -0.57 -25.00 12.21 -4.11 -0.05 -25.05 16 20 C -0.31 -8.90 6.27 -18.78 -0.12 -9.02 16 21 C 0.14 2.39 11.50 84.27 0.97 3.36 16 22 N -0.44 -7.17 7.20 -56.42 -0.41 -7.57 16 23 H 0.46 3.27 8.96 -213.54 -1.91 1.36 16 24 N -0.30 -7.86 12.63 -44.53 -0.56 -8.42 16 25 C 0.16 4.79 6.94 44.08 0.31 5.10 16 26 C -0.05 -1.77 5.73 -20.05 -0.11 -1.88 16 27 C -0.07 -2.31 7.76 22.49 0.17 -2.13 16 28 C -0.14 -4.14 10.03 22.24 0.22 -3.92 16 29 C -0.11 -2.61 10.04 22.31 0.22 -2.38 16 30 C -0.14 -3.27 10.03 22.24 0.22 -3.04 16 31 C -0.10 -2.87 9.76 22.49 0.22 -2.65 16 32 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.05 1.16 8.08 -2.39 -0.02 1.14 16 35 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 36 H 0.02 0.90 7.99 -2.39 -0.02 0.88 16 37 H 0.24 15.23 8.31 -92.71 -0.77 14.46 16 38 H 0.02 0.87 7.27 -2.39 -0.02 0.85 16 39 H -0.01 -0.90 7.51 -2.39 -0.02 -0.92 16 40 H 0.41 8.82 7.47 -92.71 -0.69 8.13 16 41 H 0.24 1.33 7.48 -2.91 -0.02 1.31 16 42 H 0.13 4.58 5.72 -2.91 -0.02 4.56 16 43 H 0.13 3.39 8.06 -2.91 -0.02 3.36 16 44 H 0.15 2.62 8.06 -2.92 -0.02 2.60 16 45 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 46 H 0.13 3.31 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -86.58 379.19 0.94 -85.64 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -1.58 Total: 20.69 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 5.89 Total: 4.64 kcal Atomic # 7 Polarization: -129.59 SS G_CDS: -5.35 Total: -134.94 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.05 Total: -25.05 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.01 kcal Total: -86.58 0.94 -85.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080218505.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.726 kcal (2) G-P(sol) polarization free energy of solvation -86.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds