Wall clock time and date at job start Wed Apr 1 2020 00:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 110.91407 * 2 1 4 4 C 1.55120 * 111.16407 * 236.06912 * 2 1 3 5 5 N 1.47428 * 104.94600 * 205.12748 * 4 2 1 6 6 C 1.36933 * 125.65436 * 204.04005 * 5 4 2 7 7 H 1.08006 * 119.99506 * 359.97438 * 6 5 4 8 8 C 1.38803 * 120.00346 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00092 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00130 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46902 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.46916 * 119.99987 * 10 8 6 13 13 H 1.48501 * 109.46723 * 240.00095 * 10 8 6 14 14 C 1.47022 * 108.69951 * 24.00428 * 5 4 2 15 15 C 1.54325 * 107.27142 * 358.94065 * 14 5 4 16 16 H 1.09000 * 110.72042 * 96.34704 * 15 14 5 17 17 N 1.46501 * 110.71942 * 219.44120 * 15 14 5 18 18 C 1.34774 * 120.00057 * 271.15610 * 17 15 14 19 19 O 1.21575 * 120.00102 * 0.02562 * 18 17 15 20 20 C 1.47652 * 119.99777 * 179.97438 * 18 17 15 21 21 C 1.40251 * 120.49240 * 180.02562 * 20 18 17 22 22 C 1.38004 * 118.35858 * 179.97438 * 21 20 18 23 23 C 1.39181 * 119.25425 * 0.02562 * 22 21 20 24 24 N 1.39409 * 119.53066 * 180.02562 * 23 22 21 25 25 C 1.36715 * 125.69023 * 359.67194 * 24 23 22 26 26 C 1.34774 * 108.19152 * 179.83452 * 25 24 23 27 27 C 1.41025 * 107.49855 * 0.42438 * 26 25 24 28 28 C 1.34774 * 107.49615 * 359.73451 * 27 26 25 29 29 N 1.32453 * 120.94007 * 0.02562 * 23 22 21 30 30 C 1.31634 * 121.79688 * 359.97438 * 29 23 22 31 31 H 1.09005 * 109.47199 * 296.09980 * 1 2 3 32 32 H 1.08998 * 109.47229 * 56.10247 * 1 2 3 33 33 H 1.09001 * 109.46986 * 176.10131 * 1 2 3 34 34 H 1.09007 * 110.41508 * 86.20521 * 4 2 1 35 35 H 1.08997 * 110.30241 * 323.99978 * 4 2 1 36 36 H 0.97006 * 120.00080 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.88546 * 239.52247 * 14 5 4 38 38 H 1.09001 * 110.00964 * 118.42791 * 14 5 4 39 39 H 0.96997 * 119.99913 * 91.15652 * 17 15 14 40 40 H 1.08000 * 120.82131 * 0.02562 * 21 20 18 41 41 H 1.07995 * 120.37378 * 180.02562 * 22 21 20 42 42 H 1.08000 * 125.90004 * 359.97438 * 25 24 23 43 43 H 1.07993 * 126.24903 * 180.13041 * 26 25 24 44 44 H 1.07992 * 126.24940 * 179.70550 * 27 26 25 45 45 H 1.08005 * 125.89988 * 179.97438 * 28 27 26 46 46 H 1.07999 * 119.67916 * 179.97438 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0900 -0.8075 -1.2002 5 7 3.4299 -1.2473 -0.7705 6 6 4.4680 -1.5728 -1.6021 7 1 4.3396 -1.5174 -2.6731 8 6 5.6851 -1.9737 -1.0687 9 7 5.8414 -2.0415 0.2364 10 14 7.1015 -2.4169 -2.2032 11 1 6.6718 -2.2598 -3.6160 12 1 8.2524 -1.5184 -1.9324 13 1 7.5059 -3.8254 -1.9630 14 6 3.4672 -1.2780 0.6989 15 6 2.0862 -0.8078 1.2022 16 1 1.4451 -1.6613 1.4230 17 7 2.2286 0.0497 2.3815 18 6 2.2498 -0.4966 3.6134 19 8 2.1511 -1.7011 3.7460 20 6 2.3939 0.3676 4.8018 21 6 2.4178 -0.1899 6.0885 22 6 2.5549 0.6587 7.1682 23 6 2.6636 2.0285 6.9471 24 7 2.8029 2.8909 8.0335 25 6 2.8394 2.5180 9.3483 26 6 2.9873 3.6290 10.0968 27 6 3.0346 4.7300 9.2168 28 6 2.9198 4.2512 7.9622 29 7 2.6367 2.5244 5.7192 30 6 2.5075 1.7513 4.6616 31 1 -0.3634 0.4521 0.9229 32 1 -0.3633 0.5731 -0.8530 33 1 -0.3633 -1.0253 -0.0699 34 1 2.1642 -0.1732 -2.0837 35 1 1.4553 -1.6695 -1.4052 36 1 6.6919 -2.3221 0.6091 37 1 4.2434 -0.6055 1.0642 38 1 3.6625 -2.2926 1.0460 39 1 2.3077 1.0106 2.2757 40 1 2.3317 -1.2570 6.2309 41 1 2.5776 0.2643 8.1733 42 1 2.7651 1.5076 9.7223 43 1 3.0524 3.6693 11.1740 44 1 3.1426 5.7673 9.4970 45 1 2.9198 4.8403 7.0570 46 1 2.4892 2.1922 3.6759 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080637447.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:00 Heat of formation + Delta-G solvation = 71.524786 kcal Electronic energy + Delta-G solvation = -28468.505199 eV Core-core repulsion = 24552.413064 eV Total energy + Delta-G solvation = -3916.092135 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.79197 -41.50616 -40.31976 -39.01873 -35.74372 -34.70855 -34.16511 -33.77609 -32.17842 -30.98421 -29.89595 -29.26726 -27.37776 -25.94758 -25.15122 -24.74199 -22.70949 -21.71778 -21.56382 -21.21850 -20.97587 -19.75026 -18.91733 -18.74375 -17.92471 -17.03492 -16.84925 -16.55926 -16.33597 -15.90522 -15.84774 -15.55271 -15.06446 -14.74337 -14.60401 -14.42276 -14.32602 -14.28698 -14.09064 -13.91305 -13.71192 -13.33539 -13.26710 -13.04296 -12.99628 -12.90414 -12.61955 -12.16023 -12.08051 -11.86780 -11.66452 -11.47688 -11.35700 -11.27130 -11.01602 -10.80745 -10.75859 -10.09542 -9.33338 -9.26118 -8.93018 -7.85919 -5.23288 -0.78356 -0.03492 1.12014 1.43856 1.45295 1.49352 1.55675 1.85162 2.03217 2.03637 2.48255 2.68233 3.05007 3.32733 3.43454 3.52490 3.62889 3.65817 3.74448 3.84851 4.04637 4.09948 4.16001 4.26060 4.38150 4.47927 4.48361 4.61125 4.65124 4.72516 4.72805 4.88604 4.89412 5.06417 5.09045 5.14220 5.18684 5.24634 5.29319 5.30324 5.44733 5.50369 5.60378 5.77055 5.83417 6.01845 6.16006 6.26267 6.46526 6.61555 7.05274 7.14492 7.75126 8.38445 9.23328 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014943 B = 0.002378 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.379394 B =11770.764626 C =12621.881350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.094 4.094 3 H 0.094 0.906 4 C 0.132 3.868 5 N -0.628 5.628 6 C -0.238 4.238 7 H 0.089 0.911 8 C -0.071 4.071 9 N -0.952 5.952 10 Si 0.979 3.021 11 H -0.261 1.261 12 H -0.292 1.292 13 H -0.297 1.297 14 C 0.187 3.813 15 C 0.136 3.864 16 H 0.078 0.922 17 N -0.694 5.694 18 C 0.563 3.437 19 O -0.576 6.576 20 C -0.210 4.210 21 C 0.009 3.991 22 C -0.185 4.185 23 C 0.360 3.640 24 N -0.407 5.407 25 C -0.023 4.023 26 C -0.187 4.187 27 C -0.197 4.197 28 C -0.014 4.014 29 N -0.521 5.521 30 C 0.179 3.821 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.026 0.974 36 H 0.243 0.757 37 H 0.018 0.982 38 H -0.009 1.009 39 H 0.412 0.588 40 H 0.161 0.839 41 H 0.179 0.821 42 H 0.196 0.804 43 H 0.167 0.833 44 H 0.160 0.840 45 H 0.170 0.830 46 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.635 13.079 16.527 24.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.113 4.113 3 H 0.113 0.887 4 C 0.007 3.993 5 N -0.354 5.354 6 C -0.367 4.367 7 H 0.107 0.893 8 C -0.264 4.264 9 N -0.602 5.602 10 Si 0.807 3.193 11 H -0.185 1.185 12 H -0.219 1.219 13 H -0.224 1.224 14 C 0.061 3.939 15 C 0.030 3.970 16 H 0.096 0.904 17 N -0.345 5.345 18 C 0.351 3.649 19 O -0.456 6.456 20 C -0.216 4.216 21 C -0.017 4.017 22 C -0.206 4.206 23 C 0.132 3.868 24 N -0.083 5.083 25 C -0.147 4.147 26 C -0.211 4.211 27 C -0.221 4.221 28 C -0.139 4.139 29 N -0.233 5.233 30 C 0.020 3.980 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.053 0.947 37 H 0.036 0.964 38 H 0.009 0.991 39 H 0.250 0.750 40 H 0.178 0.822 41 H 0.197 0.803 42 H 0.213 0.787 43 H 0.185 0.815 44 H 0.178 0.822 45 H 0.188 0.812 46 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -11.472 12.914 16.275 23.733 hybrid contribution 1.306 -1.116 -0.547 1.803 sum -10.165 11.799 15.728 22.134 Atomic orbital electron populations 1.21658 0.91615 1.02342 1.03093 1.22588 0.97316 0.99002 0.92443 0.88732 1.21903 0.85195 0.95819 0.96423 1.44726 1.09641 1.79072 1.01998 1.19541 0.90080 1.37202 0.89870 0.89341 1.25713 1.00721 1.02531 0.97414 1.70235 1.24190 1.54748 1.10980 0.84994 0.78950 0.76712 0.78600 1.18474 1.21941 1.22389 1.21114 0.92626 0.96648 0.83525 1.22121 0.96610 0.93639 0.84586 0.90358 1.45644 1.73059 1.11110 1.04694 1.18247 0.75810 0.87267 0.83579 1.90781 1.51632 1.16368 1.86805 1.20870 1.10842 0.95352 0.94546 1.21753 0.88273 1.01898 0.89811 1.21746 1.06005 0.90468 1.02414 1.18752 0.93369 0.88195 0.86499 1.41664 1.55646 1.06382 1.04591 1.22541 1.09964 1.02136 0.80064 1.21453 1.07421 0.91551 1.00642 1.21443 1.08292 1.00586 0.91762 1.22350 1.08626 0.82165 1.00779 1.67037 1.17817 1.40597 0.97868 1.23040 0.89268 0.88264 0.97458 0.91254 0.90334 0.92986 0.92603 0.95624 0.94736 0.96385 0.99071 0.74997 0.82165 0.80331 0.78698 0.81538 0.82245 0.81235 0.79176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.32 71.98 0.67 -2.15 16 2 C -0.09 -2.79 3.27 -9.33 -0.03 -2.82 16 3 H 0.09 2.55 8.01 -2.38 -0.02 2.53 16 4 C 0.13 5.06 6.72 86.93 0.58 5.64 16 5 N -0.63 -32.23 3.40 -691.56 -2.35 -34.58 16 6 C -0.24 -13.38 10.28 84.03 0.86 -12.51 16 7 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 8 C -0.07 -4.13 5.49 84.86 0.47 -3.67 16 9 N -0.95 -59.38 10.31 21.65 0.22 -59.15 16 10 Si 0.98 46.58 29.55 68.60 2.03 48.61 16 11 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 12 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 13 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 14 C 0.19 9.53 5.13 86.73 0.44 9.98 16 15 C 0.14 5.03 2.74 46.18 0.13 5.16 16 16 H 0.08 3.12 7.52 -2.39 -0.02 3.10 16 17 N -0.69 -20.90 5.07 -439.97 -2.23 -23.13 16 18 C 0.56 18.37 7.77 86.73 0.67 19.04 16 19 O -0.58 -23.83 16.10 -3.95 -0.06 -23.89 16 20 C -0.21 -5.30 5.89 -19.99 -0.12 -5.42 16 21 C 0.01 0.20 9.70 22.70 0.22 0.42 16 22 C -0.18 -3.34 9.46 22.44 0.21 -3.12 16 23 C 0.36 7.73 7.48 132.92 0.99 8.72 16 24 N -0.41 -8.10 2.96 -352.10 -1.04 -9.14 16 25 C -0.02 -0.35 10.71 83.14 0.89 0.54 16 26 C -0.19 -2.73 10.86 22.16 0.24 -2.49 16 27 C -0.20 -3.25 10.86 22.16 0.24 -3.00 16 28 C -0.01 -0.28 10.99 83.14 0.91 0.63 16 29 N -0.52 -11.97 9.80 -191.89 -1.88 -13.85 16 30 C 0.18 3.86 10.71 85.04 0.91 4.77 16 31 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.05 1.20 8.08 -2.39 -0.02 1.18 16 34 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.03 0.98 7.99 -2.39 -0.02 0.97 16 36 H 0.24 14.87 8.31 -92.70 -0.77 14.10 16 37 H 0.02 1.02 7.27 -2.39 -0.02 1.00 16 38 H -0.01 -0.55 7.51 -2.39 -0.02 -0.57 16 39 H 0.41 9.31 6.59 -92.71 -0.61 8.70 16 40 H 0.16 3.41 7.73 -2.91 -0.02 3.39 16 41 H 0.18 1.95 6.66 -2.91 -0.02 1.93 16 42 H 0.20 1.66 6.96 -2.91 -0.02 1.64 16 43 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 44 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 45 H 0.17 3.15 8.03 -2.91 -0.02 3.12 16 46 H 0.19 3.00 6.41 -2.91 -0.02 2.98 16 Total: -1.00 -79.47 381.28 3.39 -76.09 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.40 Total: 19.35 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 8.30 Total: 19.70 kcal Atomic # 7 Polarization: -132.58 SS G_CDS: -7.28 Total: -139.86 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.06 Total: -23.89 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -79.47 3.39 -76.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080637447.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.613 kcal (2) G-P(sol) polarization free energy of solvation -79.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds