Wall clock time and date at job start Wed Apr 1 2020 00:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.99947 * 2 1 4 4 C 1.54319 * 109.88506 * 238.90052 * 2 1 3 5 5 H 1.09004 * 110.71842 * 336.93380 * 4 2 1 6 6 N 1.46494 * 110.71876 * 100.02536 * 4 2 1 7 7 C 1.34784 * 119.99899 * 205.00091 * 6 4 2 8 8 O 1.21589 * 119.99894 * 0.02562 * 7 6 4 9 9 C 1.47583 * 119.99572 * 180.02562 * 7 6 4 10 10 C 1.39816 * 120.00192 * 179.97438 * 9 7 6 11 11 C 1.36580 * 120.00013 * 180.02562 * 10 9 7 12 12 C 1.39780 * 120.00042 * 0.02562 * 11 10 9 13 13 C 1.47659 * 119.99585 * 179.97438 * 12 11 10 14 14 C 1.36241 * 126.78053 * 0.14599 * 13 12 11 15 15 N 1.33674 * 107.86580 * 180.29457 * 14 13 12 16 16 C 1.30655 * 109.57677 * 359.73407 * 15 14 13 17 17 N 1.34966 * 109.02842 * 359.97438 * 16 15 14 18 18 H 0.97001 * 126.45502 * 179.97438 * 17 16 15 19 19 C 1.39784 * 120.00971 * 0.26767 * 12 11 10 20 20 C 1.36582 * 119.99949 * 359.45125 * 19 12 11 21 21 C 1.55155 * 102.94279 * 218.39332 * 4 2 1 22 22 C 1.54908 * 101.58273 * 35.50333 * 21 4 2 23 23 N 1.47026 * 109.87854 * 121.09021 * 2 1 3 24 24 C 1.36931 * 125.65321 * 298.32739 * 23 2 1 25 25 H 1.08000 * 120.00021 * 359.97438 * 24 23 2 26 26 C 1.38812 * 120.00099 * 180.02562 * 24 23 2 27 27 N 1.31620 * 120.00149 * 359.97438 * 26 24 23 28 28 Si 1.86803 * 120.00126 * 179.97438 * 26 24 23 29 29 H 1.48503 * 109.47078 * 59.99420 * 28 26 24 30 30 H 1.48493 * 109.47144 * 179.97438 * 28 26 24 31 31 H 1.48498 * 109.47060 * 299.99890 * 28 26 24 32 32 H 1.08995 * 109.47175 * 181.09603 * 1 2 3 33 33 H 1.08997 * 109.47208 * 301.09990 * 1 2 3 34 34 H 1.08998 * 109.46540 * 61.09821 * 1 2 3 35 35 H 0.97000 * 120.00417 * 25.00690 * 6 4 2 36 36 H 1.08006 * 119.99894 * 0.02562 * 10 9 7 37 37 H 1.07997 * 120.00345 * 179.97438 * 11 10 9 38 38 H 1.08003 * 126.06382 * 0.02562 * 14 13 12 39 39 H 1.08001 * 125.48916 * 179.97438 * 16 15 14 40 40 H 1.07997 * 119.99518 * 179.72666 * 19 12 11 41 41 H 1.08000 * 119.99819 * 180.29483 * 20 19 12 42 42 H 1.09004 * 111.00313 * 153.57518 * 21 4 2 43 43 H 1.09006 * 111.00363 * 277.42596 * 21 4 2 44 44 H 1.09008 * 110.36324 * 204.15554 * 22 21 4 45 45 H 1.08994 * 110.37079 * 81.83117 * 22 21 4 46 46 H 0.97003 * 120.00179 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2426 5 1 1.3040 -1.4437 -1.6200 6 7 2.4555 0.1960 -2.2874 7 6 2.4583 -0.1886 -3.5792 8 8 2.1278 -1.3200 -3.8774 9 6 2.8624 0.7639 -4.6317 10 6 2.8658 0.3650 -5.9717 11 6 3.2403 1.2463 -6.9456 12 6 3.6207 2.5469 -6.6026 13 6 4.0261 3.4994 -7.6555 14 6 4.0775 3.2605 -8.9958 15 7 4.4994 4.3781 -9.5957 16 6 4.7086 5.3044 -8.6983 17 7 4.4238 4.8061 -7.4768 18 1 4.4914 5.2776 -6.6318 19 6 3.6232 2.9440 -5.2623 20 6 3.2433 2.0647 -4.2888 21 6 3.2876 -1.5143 -0.6922 22 6 2.8145 -1.8794 0.7370 23 7 2.0300 -0.7140 1.1840 24 6 1.8049 -0.3556 2.4863 25 1 1.2147 0.5206 2.7109 26 6 2.3360 -1.1177 3.5177 27 7 3.0556 -2.1853 3.2440 28 14 2.0295 -0.6284 5.2943 29 1 0.5690 -0.6290 5.5630 30 1 2.6990 -1.5985 6.1975 31 1 2.5763 0.7312 5.5346 32 1 -0.3633 -1.0274 0.0197 33 1 -0.3633 0.5308 0.8799 34 1 -0.3632 0.4967 -0.8997 35 1 2.7189 1.0987 -2.0496 36 1 2.5723 -0.6401 -6.2367 37 1 3.2433 0.9381 -7.9807 38 1 3.8264 2.3315 -9.4861 39 1 5.0539 6.3074 -8.9013 40 1 3.9214 3.9476 -4.9972 41 1 3.2407 2.3730 -3.2537 42 1 3.4852 -2.4112 -1.2794 43 1 4.1655 -0.8689 -0.6602 44 1 3.6716 -2.0338 1.3925 45 1 2.1886 -2.7715 0.7131 46 1 3.4265 -2.7181 3.9648 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088956860.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:10 Heat of formation + Delta-G solvation = 76.246346 kcal Electronic energy + Delta-G solvation = -28116.848815 eV Core-core repulsion = 24200.961422 eV Total energy + Delta-G solvation = -3915.887393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.46084 -40.30927 -38.75550 -37.43221 -34.18984 -33.30668 -32.66703 -31.87851 -31.34894 -30.40564 -29.12432 -28.27948 -25.25546 -24.07763 -23.89501 -23.21937 -21.80079 -21.20064 -20.59793 -20.19105 -19.77567 -19.04459 -17.65190 -16.84977 -16.22155 -15.79967 -15.48297 -15.31645 -15.00821 -14.79956 -14.64844 -14.31829 -14.13354 -13.93435 -13.81954 -13.71532 -13.38541 -13.01605 -12.79171 -12.43987 -12.16167 -11.98289 -11.60943 -11.42448 -11.17971 -10.88298 -10.86582 -10.61998 -10.59073 -10.51781 -10.45455 -10.15568 -9.96069 -9.83071 -9.76022 -9.58954 -9.46715 -8.73453 -8.65947 -8.23123 -6.91173 -5.68474 -3.11645 0.17530 1.04999 1.71763 2.54881 2.62220 2.97541 3.24896 3.37315 3.42043 3.43305 3.69752 4.07762 4.28862 4.33907 4.44949 4.48190 4.69460 4.83566 4.95753 4.96903 5.09906 5.24096 5.35225 5.39150 5.51041 5.52320 5.58832 5.61571 5.78239 5.89645 6.04646 6.09048 6.09531 6.20181 6.21634 6.27576 6.31503 6.44717 6.49625 6.57412 6.68294 6.83196 6.83309 7.07022 7.48567 7.55008 7.58652 7.65404 7.82028 8.29488 8.33565 9.17222 9.78116 10.41938 11.34659 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023850 B = 0.001971 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.710141 B =14203.831582 C =14787.677213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.035 0.965 4 C 0.134 3.866 5 H 0.096 0.904 6 N -0.709 5.709 7 C 0.554 3.446 8 O -0.538 6.538 9 C -0.127 4.127 10 C -0.051 4.051 11 C -0.110 4.110 12 C 0.009 3.991 13 C 0.007 3.993 14 C 0.006 3.994 15 N -0.494 5.494 16 C 0.196 3.804 17 N -0.564 5.564 18 H 0.422 0.578 19 C -0.128 4.128 20 C -0.076 4.076 21 C -0.153 4.153 22 C 0.152 3.848 23 N -0.595 5.595 24 C -0.221 4.221 25 H 0.077 0.923 26 C -0.010 4.010 27 N -0.921 5.921 28 Si 0.915 3.085 29 H -0.286 1.286 30 H -0.290 1.290 31 H -0.285 1.285 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.038 0.962 35 H 0.396 0.604 36 H 0.143 0.857 37 H 0.135 0.865 38 H 0.175 0.825 39 H 0.212 0.788 40 H 0.121 0.879 41 H 0.131 0.869 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.110 0.890 45 H 0.015 0.985 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.870 13.899 -21.091 25.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.052 0.948 4 C 0.030 3.970 5 H 0.114 0.886 6 N -0.359 5.359 7 C 0.341 3.659 8 O -0.416 6.416 9 C -0.131 4.131 10 C -0.070 4.070 11 C -0.129 4.129 12 C 0.007 3.993 13 C -0.107 4.107 14 C -0.144 4.144 15 N -0.213 5.213 16 C -0.087 4.087 17 N -0.167 5.167 18 H 0.260 0.740 19 C -0.147 4.147 20 C -0.095 4.095 21 C -0.193 4.193 22 C 0.027 3.973 23 N -0.320 5.320 24 C -0.350 4.350 25 H 0.095 0.905 26 C -0.206 4.206 27 N -0.569 5.569 28 Si 0.745 3.255 29 H -0.212 1.212 30 H -0.216 1.216 31 H -0.212 1.212 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.232 0.768 36 H 0.160 0.840 37 H 0.153 0.847 38 H 0.193 0.807 39 H 0.228 0.772 40 H 0.139 0.861 41 H 0.149 0.851 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.127 0.873 45 H 0.033 0.967 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.804 13.093 -21.926 25.691 hybrid contribution -0.146 0.973 2.389 2.584 sum 2.658 14.066 -19.536 24.220 Atomic orbital electron populations 1.22242 0.97836 1.01519 0.99901 1.20993 0.92644 0.94712 0.86954 0.94786 1.22209 0.97798 0.90783 0.86250 0.88624 1.46008 1.67648 1.16247 1.06028 1.18149 0.78000 0.87212 0.82573 1.90782 1.48283 1.20156 1.82390 1.20173 1.04006 0.94392 0.94497 1.20995 0.94763 1.00283 0.90915 1.20800 1.00086 0.91806 1.00207 1.18083 0.98026 0.92342 0.90823 1.19696 1.10076 0.85361 0.95584 1.22496 1.04243 0.98276 0.89402 1.70190 1.17884 1.00477 1.32734 1.25089 1.03576 1.00743 0.79338 1.43348 1.51372 1.11101 1.10862 0.73978 1.20715 1.02359 0.99822 0.91807 1.20991 0.96293 0.92432 0.99788 1.23407 0.96680 0.99365 0.99814 1.21962 0.97401 0.88403 0.89490 1.44480 1.59262 1.28229 1.00030 1.18964 1.27297 1.08194 0.80507 0.90526 1.24797 1.00346 0.97382 0.98070 1.69782 1.38994 1.17776 1.30318 0.86156 0.77656 0.77402 0.84274 1.21223 1.21573 1.21205 0.92849 0.92702 0.94345 0.76834 0.83963 0.84695 0.80745 0.77201 0.86140 0.85109 0.91923 0.91986 0.87279 0.96692 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.13 37.16 0.34 -2.50 16 2 C 0.16 3.04 3.48 -66.95 -0.23 2.81 16 3 H 0.03 0.64 7.72 -51.93 -0.40 0.24 16 4 C 0.13 2.39 2.85 -66.10 -0.19 2.21 16 5 H 0.10 1.85 7.25 -51.93 -0.38 1.47 16 6 N -0.71 -10.20 5.13 -53.06 -0.27 -10.47 16 7 C 0.55 8.21 7.76 -12.45 -0.10 8.11 16 8 O -0.54 -9.87 15.97 5.29 0.08 -9.79 16 9 C -0.13 -1.46 5.88 -104.91 -0.62 -2.08 16 10 C -0.05 -0.52 9.53 -39.59 -0.38 -0.90 16 11 C -0.11 -0.93 9.52 -39.60 -0.38 -1.30 16 12 C 0.01 0.07 5.88 -104.90 -0.62 -0.54 16 13 C 0.01 0.06 6.96 -82.08 -0.57 -0.51 16 14 C 0.01 0.05 11.28 -17.47 -0.20 -0.15 16 15 N -0.49 -4.68 11.22 -14.38 -0.16 -4.85 16 16 C 0.20 1.20 13.02 -90.32 -1.18 0.03 16 17 N -0.56 -3.15 6.06 -10.65 -0.06 -3.21 16 18 H 0.42 1.10 8.20 -40.82 -0.33 0.76 16 19 C -0.13 -0.99 9.65 -39.60 -0.38 -1.37 16 20 C -0.08 -0.69 9.48 -39.59 -0.38 -1.06 16 21 C -0.15 -2.98 6.77 -24.58 -0.17 -3.15 16 22 C 0.15 3.66 5.89 -2.53 -0.01 3.64 16 23 N -0.59 -14.53 3.13 -162.57 -0.51 -15.04 16 24 C -0.22 -5.92 9.89 -15.06 -0.15 -6.06 16 25 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 26 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 27 N -0.92 -26.30 10.09 55.49 0.56 -25.74 16 28 Si 0.91 21.61 29.55 -169.99 -5.02 16.58 16 29 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 30 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 31 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.40 4.66 6.38 -40.82 -0.26 4.40 16 36 H 0.14 1.48 7.64 -52.48 -0.40 1.08 16 37 H 0.14 0.83 7.04 -52.49 -0.37 0.46 16 38 H 0.18 1.18 7.30 -52.48 -0.38 0.80 16 39 H 0.21 0.43 8.06 -52.49 -0.42 0.01 16 40 H 0.12 0.60 7.27 -52.49 -0.38 0.22 16 41 H 0.13 0.96 6.38 -52.49 -0.34 0.62 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.11 2.93 5.87 -51.92 -0.30 2.63 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 378.92 15.07 5.71 5.71 Total: -1.00 -34.21 378.92 -11.02 -45.22 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -6.05 Total: 4.81 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -5.29 Total: -3.22 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.45 Total: -59.31 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.79 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.21 -11.02 -45.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088956860.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.470 kcal (2) G-P(sol) polarization free energy of solvation -34.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds