Wall clock time and date at job start Wed Apr 1 2020 00:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.63899 * 2 1 4 4 C 1.54322 * 110.71822 * 236.66102 * 2 1 3 5 5 N 1.47025 * 107.26924 * 219.44007 * 4 2 1 6 6 C 1.36943 * 125.64475 * 178.91844 * 5 4 2 7 7 H 1.07999 * 119.99528 * 180.02562 * 6 5 4 8 8 C 1.38808 * 120.00075 * 0.03423 * 6 5 4 9 9 N 1.31618 * 119.99963 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99709 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47199 * 90.00094 * 10 8 6 12 12 H 1.48501 * 109.46896 * 209.99322 * 10 8 6 13 13 H 1.48494 * 109.47280 * 329.99404 * 10 8 6 14 14 C 1.47425 * 108.70526 * 358.94629 * 5 4 2 15 15 C 1.54908 * 104.82999 * 24.12279 * 14 5 4 16 16 H 1.09009 * 111.03511 * 81.08441 * 15 14 5 17 17 C 1.53004 * 111.00356 * 204.91654 * 15 14 5 18 18 N 1.46502 * 109.46844 * 287.19656 * 17 15 14 19 19 C 1.34785 * 119.99648 * 180.02562 * 18 17 15 20 20 O 1.21540 * 119.99717 * 0.02562 * 19 18 17 21 21 C 1.47911 * 119.99761 * 180.02562 * 19 18 17 22 22 N 1.32373 * 120.63584 * 354.48555 * 21 19 18 23 23 N 1.28093 * 123.17908 * 180.02562 * 22 21 19 24 24 C 1.31796 * 123.49805 * 0.02562 * 23 22 21 25 25 C 1.40401 * 119.13886 * 359.97438 * 24 23 22 26 26 C 1.40233 * 122.73752 * 180.02562 * 25 24 23 27 27 C 1.36258 * 119.37140 * 179.72517 * 26 25 24 28 28 C 1.39379 * 121.06788 * 0.51107 * 27 26 25 29 29 C 1.36361 * 121.09422 * 359.47444 * 28 27 26 30 30 C 1.39836 * 119.41932 * 0.25890 * 29 28 27 31 31 H 1.09005 * 109.47090 * 296.85978 * 1 2 3 32 32 H 1.08995 * 109.47416 * 56.85928 * 1 2 3 33 33 H 1.08996 * 109.47305 * 176.86370 * 1 2 3 34 34 H 1.08992 * 109.88700 * 338.86048 * 4 2 1 35 35 H 1.09005 * 109.87790 * 99.87493 * 4 2 1 36 36 H 0.97008 * 119.99805 * 179.97438 * 9 8 6 37 37 H 1.09001 * 110.36502 * 265.28818 * 14 5 4 38 38 H 1.09005 * 110.36657 * 142.96236 * 14 5 4 39 39 H 1.08998 * 109.47268 * 167.20203 * 17 15 14 40 40 H 1.08989 * 109.47275 * 47.19672 * 17 15 14 41 41 H 0.96999 * 120.00358 * 0.02562 * 18 17 15 42 42 H 1.08004 * 120.43066 * 180.02562 * 24 23 22 43 43 H 1.07999 * 120.31064 * 359.95400 * 26 25 24 44 44 H 1.07999 * 119.46848 * 180.26878 * 27 26 25 45 45 H 1.07999 * 119.45335 * 179.75171 * 28 27 26 46 46 H 1.07996 * 120.29119 * 180.23236 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0759 -0.7933 -1.2059 5 7 3.2445 -1.5520 -0.7363 6 6 4.0036 -2.4004 -1.4974 7 1 4.8456 -2.9136 -1.0570 8 6 3.6909 -2.6006 -2.8349 9 7 2.6645 -1.9754 -3.3715 10 14 4.7268 -3.7574 -3.8732 11 1 4.1663 -5.1302 -3.7935 12 1 4.7151 -3.2993 -5.2857 13 1 6.1224 -3.7622 -3.3659 14 6 3.4633 -1.2486 0.6897 15 6 2.0789 -0.7933 1.2151 16 1 1.4448 -1.6508 1.4408 17 6 2.2278 0.1122 2.4394 18 7 2.6328 -0.6918 3.5951 19 6 2.8249 -0.1025 4.7920 20 8 2.6617 1.0958 4.9124 21 6 3.2343 -0.9142 5.9587 22 7 3.3105 -2.2327 5.8699 23 7 3.6587 -2.9823 6.8484 24 6 3.9759 -2.5206 8.0414 25 6 3.9364 -1.1361 8.2713 26 6 4.2590 -0.5635 9.5101 27 6 4.2029 0.7901 9.6556 28 6 3.8202 1.6120 8.5970 29 6 3.5001 1.0887 7.3792 30 6 3.5517 -0.2960 7.1916 31 1 -0.3633 0.4643 0.9168 32 1 -0.3634 0.5618 -0.8604 33 1 -0.3634 -1.0261 -0.0562 34 1 1.3130 -1.4785 -1.5750 35 1 2.3715 -0.1059 -1.9986 36 1 2.4462 -2.1151 -4.3063 37 1 4.1931 -0.4464 0.7993 38 1 3.7960 -2.1406 1.2206 39 1 1.2748 0.5974 2.6504 40 1 2.9853 0.8702 2.2407 41 1 2.7626 -1.6483 3.4991 42 1 4.2632 -3.1984 8.8317 43 1 4.5528 -1.1893 10.3398 44 1 4.4553 1.2330 10.6077 45 1 3.7809 2.6815 8.7424 46 1 3.2089 1.7380 6.5668 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092814932.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:40 Heat of formation + Delta-G solvation = 66.070158 kcal Electronic energy + Delta-G solvation = -28536.658604 eV Core-core repulsion = 24620.329939 eV Total energy + Delta-G solvation = -3916.328665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.84253 -39.63997 -38.41952 -38.00082 -34.84576 -33.77729 -32.93163 -32.19037 -30.92873 -30.69665 -29.29066 -26.45517 -25.77738 -24.90541 -24.66659 -23.39049 -22.56531 -21.25389 -20.00798 -19.47673 -18.74133 -18.48331 -17.71838 -16.74562 -16.53788 -16.01677 -15.83216 -15.31266 -15.04369 -14.87396 -14.60289 -14.32376 -14.08621 -13.77090 -13.58938 -13.21869 -12.98496 -12.89133 -12.73885 -12.50279 -12.01674 -11.84028 -11.77668 -11.67548 -11.37493 -11.19733 -10.95915 -10.79122 -10.75287 -10.20721 -10.08423 -9.98959 -9.96791 -9.88520 -9.80108 -9.68363 -9.53700 -9.13527 -8.85205 -8.57280 -6.79889 -5.68227 -3.01474 -0.42804 0.19273 1.18611 2.28165 2.81030 2.84256 3.42585 3.47616 3.49415 3.56425 3.60688 3.94587 4.07583 4.19042 4.29031 4.52082 4.60828 4.66872 4.77946 5.03073 5.10306 5.19973 5.22107 5.31495 5.34855 5.50158 5.54617 5.57883 5.75508 5.76473 5.82359 5.91663 5.94223 6.03234 6.09336 6.19657 6.25497 6.29766 6.42185 6.49695 6.61528 6.64957 6.76825 6.96546 7.36163 7.60144 7.66557 7.86817 7.97106 8.29137 8.36170 9.25447 9.85631 10.51639 11.43443 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017595 B = 0.002336 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.002935 B =11984.153962 C =12984.759857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.184 3.816 5 N -0.606 5.606 6 C -0.227 4.227 7 H 0.077 0.923 8 C -0.009 4.009 9 N -0.922 5.922 10 Si 0.911 3.089 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.141 3.859 15 C -0.114 4.114 16 H 0.083 0.917 17 C 0.129 3.871 18 N -0.694 5.694 19 C 0.576 3.424 20 O -0.532 6.532 21 C 0.071 3.929 22 N -0.227 5.227 23 N -0.262 5.262 24 C 0.101 3.899 25 C -0.087 4.087 26 C -0.097 4.097 27 C -0.096 4.096 28 C -0.102 4.102 29 C -0.090 4.090 30 C -0.047 4.047 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.042 0.958 36 H 0.252 0.748 37 H 0.019 0.981 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.415 0.585 42 H 0.181 0.819 43 H 0.141 0.859 44 H 0.133 0.867 45 H 0.135 0.865 46 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.157 6.168 27.473 28.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.129 4.129 3 H 0.086 0.914 4 C 0.059 3.941 5 N -0.332 5.332 6 C -0.355 4.355 7 H 0.095 0.905 8 C -0.205 4.205 9 N -0.570 5.570 10 Si 0.742 3.258 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.014 3.986 15 C -0.134 4.134 16 H 0.101 0.899 17 C 0.006 3.994 18 N -0.344 5.344 19 C 0.359 3.641 20 O -0.409 6.409 21 C -0.087 4.087 22 N -0.063 5.063 23 N -0.094 5.094 24 C -0.073 4.073 25 C -0.094 4.094 26 C -0.117 4.117 27 C -0.115 4.115 28 C -0.122 4.122 29 C -0.109 4.109 30 C -0.055 4.055 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.037 0.963 38 H 0.056 0.944 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.251 0.749 42 H 0.198 0.802 43 H 0.159 0.841 44 H 0.151 0.849 45 H 0.153 0.847 46 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -0.469 5.511 26.207 26.785 hybrid contribution 0.841 0.070 0.402 0.935 sum 0.372 5.581 26.609 27.191 Atomic orbital electron populations 1.21700 0.95291 1.01693 1.00534 1.22440 0.95166 0.99085 0.96251 0.91377 1.21219 0.89121 0.93083 0.90683 1.44460 1.32618 1.51400 1.04730 1.19062 1.07574 1.17549 0.91326 0.90481 1.24796 0.98474 1.00350 0.96908 1.69963 1.28832 1.45559 1.12624 0.86121 0.79538 0.80395 0.79737 1.21616 1.21716 1.20737 1.21600 0.92897 0.97204 0.86878 1.22701 0.99660 0.98137 0.92903 0.89884 1.21563 1.00474 0.93849 0.83467 1.46004 1.66651 1.13319 1.08462 1.17427 0.78078 0.86402 0.82210 1.90614 1.52514 1.13937 1.83804 1.23025 0.98274 0.93037 0.94366 1.72770 1.08006 1.02907 1.22634 1.72681 1.09327 1.29775 0.97627 1.24854 0.92472 0.93129 0.96838 1.18928 1.00803 0.94522 0.95150 1.20953 0.99505 0.95682 0.95529 1.21182 0.97207 0.93659 0.99473 1.21294 0.97182 1.00930 0.92746 1.22050 0.95597 0.93840 0.99394 1.18621 0.98743 0.95567 0.92533 0.93676 0.92749 0.92656 0.93277 0.94023 0.93801 0.96336 0.94391 0.91035 0.90792 0.74878 0.80157 0.84148 0.84893 0.84748 0.80781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 9.16 37.16 0.34 -1.74 16 2 C -0.11 -1.97 3.02 -88.79 -0.27 -2.24 16 3 H 0.07 1.17 8.04 -51.93 -0.42 0.76 16 4 C 0.18 4.41 4.97 -3.06 -0.02 4.39 16 5 N -0.61 -15.50 3.39 -170.07 -0.58 -16.08 16 6 C -0.23 -6.38 10.28 -15.06 -0.15 -6.54 16 7 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 8 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 9 N -0.92 -27.23 10.31 55.49 0.57 -26.65 16 10 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.14 2.87 6.65 -2.53 -0.02 2.86 16 15 C -0.11 -1.91 2.50 -88.47 -0.22 -2.13 16 16 H 0.08 1.39 8.05 -51.92 -0.42 0.97 16 17 C 0.13 1.85 5.13 -4.04 -0.02 1.83 16 18 N -0.69 -9.57 5.49 -61.23 -0.34 -9.91 16 19 C 0.58 8.12 7.78 -12.30 -0.10 8.03 16 20 O -0.53 -8.08 13.59 5.33 0.07 -8.00 16 21 C 0.07 0.94 6.90 -82.42 -0.57 0.37 16 22 N -0.23 -3.15 10.70 33.56 0.36 -2.79 16 23 N -0.26 -3.31 11.42 30.90 0.35 -2.96 16 24 C 0.10 0.90 11.20 -16.75 -0.19 0.72 16 25 C -0.09 -0.79 5.75 -106.85 -0.61 -1.41 16 26 C -0.10 -0.59 9.84 -39.55 -0.39 -0.97 16 27 C -0.10 -0.54 9.95 -39.87 -0.40 -0.94 16 28 C -0.10 -0.73 9.95 -39.83 -0.40 -1.13 16 29 C -0.09 -0.91 9.27 -39.66 -0.37 -1.28 16 30 C -0.05 -0.54 5.77 -106.56 -0.61 -1.16 16 31 H 0.04 0.59 8.10 -51.93 -0.42 0.17 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.89 8.06 -51.93 -0.42 0.47 16 34 H 0.05 1.30 7.00 -51.93 -0.36 0.94 16 35 H 0.04 1.12 7.51 -51.93 -0.39 0.73 16 36 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.02 0.39 7.91 -51.93 -0.41 -0.02 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 40 H 0.07 1.10 7.96 -51.94 -0.41 0.68 16 41 H 0.41 5.60 7.87 -40.82 -0.32 5.28 16 42 H 0.18 0.83 8.06 -52.48 -0.42 0.40 16 43 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 44 H 0.13 0.36 8.06 -52.49 -0.42 -0.06 16 45 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 46 H 0.18 1.99 5.12 -52.49 -0.27 1.72 16 LS Contribution 377.73 15.07 5.69 5.69 Total: -1.00 -33.45 377.73 -9.32 -42.76 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.35 Total: 2.28 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -4.08 Total: -1.70 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: 0.37 Total: -58.39 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.07 Total: -8.00 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.45 -9.32 -42.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092814932.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.832 kcal (2) G-P(sol) polarization free energy of solvation -33.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds