Wall clock time and date at job start Wed Apr 1 2020 00:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.63899 * 2 1 4 4 C 1.54322 * 110.71822 * 236.66102 * 2 1 3 5 5 N 1.47025 * 107.26924 * 219.44007 * 4 2 1 6 6 C 1.36943 * 125.64475 * 178.91844 * 5 4 2 7 7 H 1.07999 * 119.99528 * 180.02562 * 6 5 4 8 8 C 1.38808 * 120.00075 * 0.03423 * 6 5 4 9 9 N 1.31618 * 119.99963 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99709 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47199 * 90.00094 * 10 8 6 12 12 H 1.48501 * 109.46896 * 209.99322 * 10 8 6 13 13 H 1.48494 * 109.47280 * 329.99404 * 10 8 6 14 14 C 1.47425 * 108.70526 * 358.94629 * 5 4 2 15 15 C 1.54908 * 104.82999 * 24.12279 * 14 5 4 16 16 H 1.09009 * 111.03511 * 81.08441 * 15 14 5 17 17 C 1.53004 * 111.00356 * 204.91654 * 15 14 5 18 18 N 1.46502 * 109.46844 * 287.19656 * 17 15 14 19 19 C 1.34785 * 119.99648 * 180.02562 * 18 17 15 20 20 O 1.21540 * 119.99717 * 0.02562 * 19 18 17 21 21 C 1.47911 * 119.99761 * 180.02562 * 19 18 17 22 22 N 1.32373 * 120.63584 * 354.48555 * 21 19 18 23 23 N 1.28093 * 123.17908 * 180.02562 * 22 21 19 24 24 C 1.31796 * 123.49805 * 0.02562 * 23 22 21 25 25 C 1.40401 * 119.13886 * 359.97438 * 24 23 22 26 26 C 1.40233 * 122.73752 * 180.02562 * 25 24 23 27 27 C 1.36258 * 119.37140 * 179.72517 * 26 25 24 28 28 C 1.39379 * 121.06788 * 0.51107 * 27 26 25 29 29 C 1.36361 * 121.09422 * 359.47444 * 28 27 26 30 30 C 1.39836 * 119.41932 * 0.25890 * 29 28 27 31 31 H 1.09005 * 109.47090 * 296.85978 * 1 2 3 32 32 H 1.08995 * 109.47416 * 56.85928 * 1 2 3 33 33 H 1.08996 * 109.47305 * 176.86370 * 1 2 3 34 34 H 1.08992 * 109.88700 * 338.86048 * 4 2 1 35 35 H 1.09005 * 109.87790 * 99.87493 * 4 2 1 36 36 H 0.97008 * 119.99805 * 179.97438 * 9 8 6 37 37 H 1.09001 * 110.36502 * 265.28818 * 14 5 4 38 38 H 1.09005 * 110.36657 * 142.96236 * 14 5 4 39 39 H 1.08998 * 109.47268 * 167.20203 * 17 15 14 40 40 H 1.08989 * 109.47275 * 47.19672 * 17 15 14 41 41 H 0.96999 * 120.00358 * 0.02562 * 18 17 15 42 42 H 1.08004 * 120.43066 * 180.02562 * 24 23 22 43 43 H 1.07999 * 120.31064 * 359.95400 * 26 25 24 44 44 H 1.07999 * 119.46848 * 180.26878 * 27 26 25 45 45 H 1.07999 * 119.45335 * 179.75171 * 28 27 26 46 46 H 1.07996 * 120.29119 * 180.23236 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0759 -0.7933 -1.2059 5 7 3.2445 -1.5520 -0.7363 6 6 4.0036 -2.4004 -1.4974 7 1 4.8456 -2.9136 -1.0570 8 6 3.6909 -2.6006 -2.8349 9 7 2.6645 -1.9754 -3.3715 10 14 4.7268 -3.7574 -3.8732 11 1 4.1663 -5.1302 -3.7935 12 1 4.7151 -3.2993 -5.2857 13 1 6.1224 -3.7622 -3.3659 14 6 3.4633 -1.2486 0.6897 15 6 2.0789 -0.7933 1.2151 16 1 1.4448 -1.6508 1.4408 17 6 2.2278 0.1122 2.4394 18 7 2.6328 -0.6918 3.5951 19 6 2.8249 -0.1025 4.7920 20 8 2.6617 1.0958 4.9124 21 6 3.2343 -0.9142 5.9587 22 7 3.3105 -2.2327 5.8699 23 7 3.6587 -2.9823 6.8484 24 6 3.9759 -2.5206 8.0414 25 6 3.9364 -1.1361 8.2713 26 6 4.2590 -0.5635 9.5101 27 6 4.2029 0.7901 9.6556 28 6 3.8202 1.6120 8.5970 29 6 3.5001 1.0887 7.3792 30 6 3.5517 -0.2960 7.1916 31 1 -0.3633 0.4643 0.9168 32 1 -0.3634 0.5618 -0.8604 33 1 -0.3634 -1.0261 -0.0562 34 1 1.3130 -1.4785 -1.5750 35 1 2.3715 -0.1059 -1.9986 36 1 2.4462 -2.1151 -4.3063 37 1 4.1931 -0.4464 0.7993 38 1 3.7960 -2.1406 1.2206 39 1 1.2748 0.5974 2.6504 40 1 2.9853 0.8702 2.2407 41 1 2.7626 -1.6483 3.4991 42 1 4.2632 -3.1984 8.8317 43 1 4.5528 -1.1893 10.3398 44 1 4.4553 1.2330 10.6077 45 1 3.7809 2.6815 8.7424 46 1 3.2089 1.7380 6.5668 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092814932.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:39 Heat of formation + Delta-G solvation = 44.002936 kcal Electronic energy + Delta-G solvation = -28537.615510 eV Core-core repulsion = 24620.329939 eV Total energy + Delta-G solvation = -3917.285572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.60265 -40.74207 -39.56956 -39.06213 -36.19644 -34.79773 -34.45353 -32.84474 -32.55180 -31.68976 -30.65532 -27.96618 -27.22066 -26.21501 -25.35691 -24.60834 -23.66421 -22.30234 -21.65273 -20.91827 -19.68816 -19.20712 -18.83463 -18.45022 -17.41926 -16.98256 -16.84329 -16.78157 -16.19018 -15.86628 -15.62014 -15.56509 -15.37734 -14.94247 -14.68941 -14.57492 -14.33687 -14.13063 -13.62779 -13.45215 -13.31392 -13.27901 -13.12677 -12.85881 -12.70825 -12.59612 -12.57931 -12.42177 -11.94584 -11.84882 -11.73588 -11.58175 -11.41363 -11.35896 -10.89240 -10.79552 -10.70460 -10.41904 -10.23185 -9.53976 -8.89784 -7.85185 -5.20726 -1.14610 -0.47802 0.53137 1.44397 1.44575 1.46591 1.55147 1.82598 2.04113 2.48688 2.73709 2.87157 3.26667 3.32225 3.37969 3.56325 3.59391 3.68644 3.77165 3.91465 3.91917 3.94927 4.19711 4.24109 4.34808 4.43091 4.48543 4.58364 4.60435 4.72146 4.76020 4.78972 4.83772 4.93167 4.97409 5.07898 5.12089 5.19383 5.27039 5.31617 5.35953 5.42813 5.46328 5.47817 5.72247 5.76408 5.81768 6.20209 6.27088 6.89830 7.10626 7.55730 7.77654 8.42138 9.24919 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017595 B = 0.002336 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.002935 B =11984.153962 C =12984.759857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.098 4.098 3 H 0.080 0.920 4 C 0.191 3.809 5 N -0.629 5.629 6 C -0.243 4.243 7 H 0.080 0.920 8 C -0.067 4.067 9 N -0.950 5.950 10 Si 0.978 3.022 11 H -0.285 1.285 12 H -0.293 1.293 13 H -0.271 1.271 14 C 0.136 3.864 15 C -0.093 4.093 16 H 0.086 0.914 17 C 0.142 3.858 18 N -0.696 5.696 19 C 0.577 3.423 20 O -0.547 6.547 21 C 0.047 3.953 22 N -0.250 5.250 23 N -0.305 5.305 24 C 0.119 3.881 25 C -0.102 4.102 26 C -0.081 4.081 27 C -0.093 4.093 28 C -0.087 4.087 29 C -0.123 4.123 30 C -0.068 4.068 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.016 0.984 35 H 0.002 0.998 36 H 0.247 0.753 37 H 0.020 0.980 38 H 0.040 0.960 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.415 0.585 42 H 0.227 0.773 43 H 0.183 0.817 44 H 0.174 0.826 45 H 0.158 0.842 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.573 6.526 31.734 32.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.118 4.118 3 H 0.098 0.902 4 C 0.067 3.933 5 N -0.355 5.355 6 C -0.372 4.372 7 H 0.097 0.903 8 C -0.260 4.260 9 N -0.599 5.599 10 Si 0.806 3.194 11 H -0.212 1.212 12 H -0.220 1.220 13 H -0.195 1.195 14 C 0.011 3.989 15 C -0.112 4.112 16 H 0.104 0.896 17 C 0.019 3.981 18 N -0.346 5.346 19 C 0.361 3.639 20 O -0.425 6.425 21 C -0.111 4.111 22 N -0.086 5.086 23 N -0.137 5.137 24 C -0.054 4.054 25 C -0.110 4.110 26 C -0.100 4.100 27 C -0.112 4.112 28 C -0.106 4.106 29 C -0.143 4.143 30 C -0.076 4.076 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.034 0.966 35 H 0.020 0.980 36 H 0.056 0.944 37 H 0.038 0.962 38 H 0.058 0.942 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.252 0.748 42 H 0.243 0.757 43 H 0.201 0.799 44 H 0.191 0.809 45 H 0.176 0.824 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.269 5.865 30.504 31.063 hybrid contribution 0.700 0.020 -0.714 1.000 sum 0.968 5.885 29.789 30.380 Atomic orbital electron populations 1.21649 0.92901 1.01615 1.02363 1.22313 0.97032 0.98680 0.93787 0.90167 1.20996 0.87990 0.91979 0.92385 1.44792 1.32769 1.51192 1.06770 1.19445 1.07924 1.17799 0.92047 0.90265 1.25653 0.99907 1.02258 0.98166 1.70190 1.30321 1.46936 1.12427 0.85081 0.78422 0.78233 0.77617 1.21181 1.21966 1.19545 1.21761 0.95217 0.97342 0.84548 1.22487 0.97000 0.98399 0.93359 0.89616 1.21362 1.01223 0.92994 0.82518 1.45952 1.66954 1.13255 1.08402 1.17622 0.77528 0.86349 0.82444 1.90607 1.53177 1.14554 1.84183 1.22889 1.00286 0.93077 0.94874 1.72642 1.08723 1.03248 1.23972 1.72584 1.11897 1.30205 0.99002 1.25559 0.89454 0.93995 0.96376 1.19245 1.01396 0.94434 0.95900 1.21483 0.97070 0.96476 0.94987 1.21664 0.95696 0.93465 1.00378 1.21678 0.94534 1.02556 0.91809 1.21915 0.98553 0.93298 1.00518 1.18835 0.99545 0.96500 0.92697 0.90395 0.92499 0.93552 0.96598 0.97955 0.94406 0.96215 0.94155 0.89465 0.91127 0.74826 0.75688 0.79925 0.80876 0.82399 0.82895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.84 9.16 71.98 0.66 -3.18 16 2 C -0.10 -3.55 3.02 -9.61 -0.03 -3.58 16 3 H 0.08 2.73 8.04 -2.39 -0.02 2.71 16 4 C 0.19 9.62 4.97 86.73 0.43 10.05 16 5 N -0.63 -33.36 3.39 -691.98 -2.35 -35.71 16 6 C -0.24 -14.11 10.28 84.03 0.86 -13.24 16 7 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 8 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 9 N -0.95 -58.46 10.31 21.65 0.22 -58.24 16 10 Si 0.98 47.11 29.55 68.60 2.03 49.14 16 11 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 13 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 14 C 0.14 5.70 6.65 86.85 0.58 6.27 16 15 C -0.09 -3.09 2.50 -9.40 -0.02 -3.12 16 16 H 0.09 2.85 8.05 -2.38 -0.02 2.83 16 17 C 0.14 3.98 5.13 86.38 0.44 4.43 16 18 N -0.70 -19.48 5.49 -465.91 -2.56 -22.03 16 19 C 0.58 16.78 7.78 86.80 0.68 17.45 16 20 O -0.55 -17.08 13.59 -3.84 -0.05 -17.13 16 21 C 0.05 1.29 6.90 42.43 0.29 1.58 16 22 N -0.25 -7.15 10.70 -47.74 -0.51 -7.66 16 23 N -0.31 -7.62 11.42 -56.16 -0.64 -8.26 16 24 C 0.12 1.87 11.20 85.23 0.95 2.83 16 25 C -0.10 -1.63 5.75 -21.31 -0.12 -1.76 16 26 C -0.08 -0.60 9.84 22.29 0.22 -0.38 16 27 C -0.09 -0.60 9.95 22.08 0.22 -0.38 16 28 C -0.09 -1.00 9.95 22.11 0.22 -0.78 16 29 C -0.12 -2.46 9.27 22.22 0.21 -2.26 16 30 C -0.07 -1.56 5.77 -21.12 -0.12 -1.68 16 31 H 0.08 1.86 8.10 -2.38 -0.02 1.84 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 33 H 0.05 1.47 8.06 -2.39 -0.02 1.45 16 34 H 0.02 0.89 7.00 -2.39 -0.02 0.87 16 35 H 0.00 0.13 7.51 -2.38 -0.02 0.11 16 36 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 37 H 0.02 0.84 7.91 -2.39 -0.02 0.82 16 38 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.09 2.23 8.10 -2.39 -0.02 2.21 16 40 H 0.07 2.06 7.96 -2.39 -0.02 2.04 16 41 H 0.42 11.56 7.87 -92.71 -0.73 10.83 16 42 H 0.23 1.11 8.06 -2.91 -0.02 1.09 16 43 H 0.18 -0.20 8.06 -2.91 -0.02 -0.23 16 44 H 0.17 -0.19 8.06 -2.91 -0.02 -0.22 16 45 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16 46 H 0.15 3.65 5.12 -2.91 -0.01 3.64 16 Total: -1.00 -78.69 377.73 2.35 -76.33 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.28 Total: 14.76 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 5.93 Total: 8.81 kcal Atomic # 7 Polarization: -126.06 SS G_CDS: -5.84 Total: -131.90 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.05 Total: -17.13 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -78.69 2.35 -76.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092814932.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.337 kcal (2) G-P(sol) polarization free energy of solvation -78.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds