Wall clock time and date at job start Wed Apr 1 2020 00:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 110.28994 * 2 1 4 4 C 1.54006 * 110.32931 * 237.86795 * 2 1 3 5 5 N 1.47482 * 107.08313 * 242.31139 * 4 2 1 6 6 C 1.34775 * 127.03387 * 154.51837 * 5 4 2 7 7 O 1.21505 * 119.99995 * 180.02562 * 6 5 4 8 8 C 1.48229 * 120.00168 * 0.02562 * 6 5 4 9 9 C 1.40570 * 119.75214 * 179.97438 * 8 6 5 10 10 N 1.31257 * 120.57748 * 179.97438 * 9 8 6 11 11 C 1.33791 * 119.80273 * 0.04543 * 10 9 8 12 12 C 1.40542 * 121.00158 * 179.97438 * 11 10 9 13 13 C 1.36070 * 119.75424 * 180.02562 * 12 11 10 14 14 C 1.39485 * 121.01578 * 359.97438 * 13 12 11 15 15 C 1.35986 * 120.98218 * 0.02642 * 14 13 12 16 16 C 1.40821 * 119.69826 * 359.97438 * 15 14 13 17 17 N 1.32165 * 119.74797 * 0.02562 * 8 6 5 18 18 C 1.48121 * 105.93250 * 334.77731 * 5 4 2 19 19 C 1.54588 * 103.42335 * 39.02441 * 18 5 4 20 20 H 1.09004 * 110.57714 * 81.16911 * 19 18 5 21 21 C 1.52998 * 110.99059 * 204.37671 * 19 18 5 22 22 N 1.46499 * 109.46965 * 288.65066 * 21 19 18 23 23 C 1.36944 * 120.00142 * 179.97438 * 22 21 19 24 24 H 1.07998 * 119.99597 * 0.02562 * 23 22 21 25 25 C 1.38804 * 119.99994 * 180.02562 * 23 22 21 26 26 N 1.31622 * 120.00330 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 119.99954 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.46894 * 60.00219 * 27 25 23 29 29 H 1.48503 * 109.46891 * 180.02562 * 27 25 23 30 30 H 1.48493 * 109.47036 * 300.00066 * 27 25 23 31 31 H 1.09009 * 109.47012 * 180.67966 * 1 2 3 32 32 H 1.09002 * 109.47457 * 300.67929 * 1 2 3 33 33 H 1.09001 * 109.47469 * 60.68368 * 1 2 3 34 34 H 1.08998 * 109.91188 * 122.94602 * 4 2 1 35 35 H 1.08998 * 110.07112 * 1.75894 * 4 2 1 36 36 H 1.08001 * 119.71011 * 0.02562 * 9 8 6 37 37 H 1.08002 * 120.12309 * 0.02562 * 12 11 10 38 38 H 1.07997 * 119.49228 * 180.02562 * 13 12 11 39 39 H 1.08005 * 119.50450 * 179.74863 * 14 13 12 40 40 H 1.07994 * 120.15096 * 179.97438 * 15 14 13 41 41 H 1.08993 * 110.66307 * 157.51068 * 18 5 4 42 42 H 1.09005 * 110.65883 * 280.62430 * 18 5 4 43 43 H 1.08997 * 109.47547 * 48.65225 * 21 19 18 44 44 H 1.08999 * 109.47290 * 168.65551 * 21 19 18 45 45 H 0.97003 * 120.00074 * 359.97438 * 22 21 19 46 46 H 0.97002 * 120.00541 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7681 -1.2229 5 7 2.8298 -1.9202 -0.7103 6 6 3.0646 -3.0858 -1.3449 7 8 3.7153 -3.9545 -0.7988 8 6 2.5291 -3.3080 -2.7091 9 6 2.7776 -4.5254 -3.3664 10 7 2.3108 -4.7396 -4.5743 11 6 1.5927 -3.7917 -5.1874 12 6 1.0812 -3.9940 -6.4807 13 6 0.3545 -3.0124 -7.0806 14 6 0.1064 -1.8030 -6.4315 15 6 0.5841 -1.5694 -5.1799 16 6 1.3406 -2.5607 -4.5256 17 7 1.8224 -2.3594 -3.2987 18 6 3.2816 -1.5368 0.6472 19 6 2.0693 -0.7720 1.2263 20 1 1.3210 -1.4693 1.6031 21 6 2.5071 0.1966 2.3266 22 7 2.9001 -0.5618 3.5169 23 6 3.3317 0.0972 4.6371 24 1 3.3821 1.1760 4.6431 25 6 3.7046 -0.6214 5.7646 26 7 3.6437 -1.9362 5.7570 27 14 4.2927 0.2775 7.2928 28 1 3.2184 1.1790 7.7810 29 1 4.6288 -0.7103 8.3495 30 1 5.4989 1.0782 6.9627 31 1 -0.3633 -1.0277 0.0122 32 1 -0.3634 0.5243 0.8838 33 1 -0.3634 0.5032 -0.8960 34 1 2.7166 -0.1220 -1.8112 35 1 1.2354 -1.1171 -1.8377 36 1 3.3570 -5.2916 -2.8728 37 1 1.2643 -4.9251 -6.9965 38 1 -0.0369 -3.1725 -8.0744 39 1 -0.4700 -1.0391 -6.9321 40 1 0.3843 -0.6280 -4.6900 41 1 3.4981 -2.4221 1.2449 42 1 4.1541 -0.8856 0.5925 43 1 3.3539 0.7865 1.9758 44 1 1.6799 0.8611 2.5760 45 1 2.8545 -1.5307 3.5115 46 1 3.9046 -2.4385 6.5448 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106252998.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:15 Heat of formation + Delta-G solvation = 57.949779 kcal Electronic energy + Delta-G solvation = -28739.346879 eV Core-core repulsion = 24822.666088 eV Total energy + Delta-G solvation = -3916.680791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.92043 -40.00974 -38.23330 -37.47477 -35.40759 -34.57268 -32.82531 -31.47762 -31.28839 -31.05337 -29.09533 -26.77973 -26.08977 -25.50590 -24.52130 -23.14026 -22.71300 -21.31827 -20.39713 -19.89797 -18.76645 -18.70254 -17.43912 -16.89734 -16.27086 -16.12334 -15.82862 -15.40420 -15.12357 -14.79333 -14.59970 -14.32416 -14.14255 -14.04272 -13.56314 -13.23140 -13.00676 -12.96372 -12.54342 -12.42617 -12.34442 -12.27760 -12.23302 -12.08026 -11.94235 -11.61958 -11.17380 -11.07389 -10.82270 -10.55728 -10.49185 -10.36740 -10.30778 -9.99870 -9.64236 -9.43378 -9.37910 -9.07815 -8.85497 -8.60399 -6.90459 -5.73196 -3.02731 -0.40045 -0.00031 1.40245 2.07451 2.73244 2.89908 3.46183 3.46933 3.50390 3.51799 3.63446 3.66547 3.80103 4.23773 4.35266 4.46687 4.59862 4.64808 4.68693 4.76415 4.84419 4.94285 4.97507 5.33507 5.37911 5.41116 5.53862 5.56840 5.58285 5.61070 5.66098 5.72060 5.82748 5.85543 5.94299 6.02130 6.08574 6.11336 6.16991 6.22284 6.24369 6.41623 6.51106 6.71668 6.73483 6.86272 7.20084 7.50191 7.71563 7.99347 8.44970 9.56045 10.13270 10.47596 11.49324 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023745 B = 0.002298 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.887813 B =12181.630652 C =13136.200081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 H 0.086 0.914 4 C 0.104 3.896 5 N -0.595 5.595 6 C 0.584 3.416 7 O -0.524 6.524 8 C 0.070 3.930 9 C 0.130 3.870 10 N -0.426 5.426 11 C 0.091 3.909 12 C -0.088 4.088 13 C -0.090 4.090 14 C -0.102 4.102 15 C -0.074 4.074 16 C 0.073 3.927 17 N -0.388 5.388 18 C 0.113 3.887 19 C -0.102 4.102 20 H 0.084 0.916 21 C 0.166 3.834 22 N -0.733 5.733 23 C -0.241 4.241 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.932 5.932 27 Si 0.907 3.093 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.189 0.811 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.144 0.856 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.022 0.978 44 H 0.024 0.976 45 H 0.384 0.616 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.975 0.467 -29.155 30.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.123 4.123 3 H 0.105 0.895 4 C -0.019 4.019 5 N -0.327 5.327 6 C 0.370 3.630 7 O -0.400 6.400 8 C -0.086 4.086 9 C -0.045 4.045 10 N -0.139 5.139 11 C -0.034 4.034 12 C -0.107 4.107 13 C -0.111 4.111 14 C -0.122 4.122 15 C -0.094 4.094 16 C -0.053 4.053 17 N -0.106 5.106 18 C -0.008 4.008 19 C -0.122 4.122 20 H 0.102 0.898 21 C 0.038 3.962 22 N -0.377 5.377 23 C -0.373 4.373 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.738 3.262 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.206 0.794 37 H 0.160 0.840 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.161 0.839 41 H 0.110 0.890 42 H 0.097 0.903 43 H 0.039 0.961 44 H 0.042 0.958 45 H 0.218 0.782 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.634 0.086 -28.928 30.189 hybrid contribution 0.337 0.204 0.918 0.998 sum -8.297 0.290 -28.010 29.215 Atomic orbital electron populations 1.21806 0.94245 1.01825 1.01751 1.22156 0.96357 0.99779 0.94020 0.89535 1.22548 0.96538 0.86615 0.96174 1.48664 1.51733 1.14211 1.18097 1.17183 0.80823 0.81578 0.83452 1.90849 1.40330 1.42726 1.66079 1.22515 0.96979 0.92660 0.96480 1.24014 0.94487 0.96011 0.90034 1.68854 1.07038 1.29472 1.08510 1.19828 0.96476 0.90992 0.96088 1.20838 0.97135 1.00451 0.92315 1.21109 0.96652 0.92930 1.00373 1.21058 0.99031 0.97563 0.94596 1.20905 0.95523 0.98332 0.94621 1.19707 0.99269 0.94720 0.91591 1.68813 1.04913 1.29391 1.07464 1.22631 0.97156 1.00389 0.80619 1.22518 0.96931 0.97912 0.94796 0.89798 1.20621 0.96599 0.92710 0.86310 1.42374 1.79266 1.05943 1.10150 1.19156 1.36092 0.91202 0.90807 0.91243 1.24752 1.02375 0.95494 0.98314 1.69652 1.54241 1.04519 1.29591 0.86269 0.78579 0.78340 0.82981 1.21312 1.21714 1.21283 0.92811 0.91949 0.92793 0.91717 0.88258 0.79413 0.84050 0.84486 0.84409 0.83869 0.88984 0.90269 0.96065 0.95849 0.78203 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.90 37.16 0.33 -1.17 16 2 C -0.10 -1.26 3.17 -89.25 -0.28 -1.54 16 3 H 0.09 0.98 7.85 -51.93 -0.41 0.57 16 4 C 0.10 1.24 5.74 -2.98 -0.02 1.23 16 5 N -0.60 -8.79 3.29 -170.95 -0.56 -9.35 16 6 C 0.58 9.04 7.89 -12.15 -0.10 8.95 16 7 O -0.52 -9.58 16.53 5.36 0.09 -9.49 16 8 C 0.07 0.91 6.74 -82.74 -0.56 0.35 16 9 C 0.13 1.55 10.75 -16.92 -0.18 1.37 16 10 N -0.43 -4.97 10.45 -10.53 -0.11 -5.08 16 11 C 0.09 0.95 6.60 -84.70 -0.56 0.39 16 12 C -0.09 -0.65 9.98 -39.49 -0.39 -1.04 16 13 C -0.09 -0.46 9.95 -39.90 -0.40 -0.85 16 14 C -0.10 -0.52 9.95 -39.93 -0.40 -0.91 16 15 C -0.07 -0.54 9.99 -39.41 -0.39 -0.93 16 16 C 0.07 0.76 6.60 -84.79 -0.56 0.20 16 17 N -0.39 -4.57 6.82 -7.39 -0.05 -4.62 16 18 C 0.11 1.87 6.44 -2.32 -0.01 1.85 16 19 C -0.10 -1.62 2.60 -88.94 -0.23 -1.85 16 20 H 0.08 1.44 7.86 -51.93 -0.41 1.03 16 21 C 0.17 3.20 5.58 -4.04 -0.02 3.18 16 22 N -0.73 -18.41 5.52 -59.91 -0.33 -18.74 16 23 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 24 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 25 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 26 N -0.93 -28.52 13.06 55.49 0.72 -27.79 16 27 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 30 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 31 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.10 1.13 5.42 -51.93 -0.28 0.85 16 36 H 0.19 2.00 7.62 -52.49 -0.40 1.60 16 37 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.14 0.29 8.06 -52.49 -0.42 -0.13 16 39 H 0.14 0.31 8.06 -52.48 -0.42 -0.12 16 40 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 41 H 0.09 1.75 7.85 -51.93 -0.41 1.34 16 42 H 0.08 1.30 7.95 -51.93 -0.41 0.89 16 43 H 0.02 0.41 8.00 -51.93 -0.42 0.00 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.38 10.26 7.67 -40.82 -0.31 9.95 16 46 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 382.20 15.07 5.76 5.76 Total: -1.00 -33.73 382.20 -9.92 -43.65 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.40 Total: 6.28 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -4.02 Total: 1.85 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: -0.33 Total: -65.59 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.73 -9.92 -43.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106252998.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.600 kcal (2) G-P(sol) polarization free energy of solvation -33.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds