Wall clock time and date at job start Wed Apr 1 2020 00:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.29136 * 2 1 4 4 C 1.54000 * 110.32870 * 237.86357 * 2 1 3 5 5 N 1.47482 * 107.08620 * 242.31053 * 4 2 1 6 6 C 1.34780 * 127.03323 * 154.51930 * 5 4 2 7 7 O 1.21552 * 119.99786 * 185.98718 * 6 5 4 8 8 C 1.47858 * 120.00122 * 5.98266 * 6 5 4 9 9 C 1.40636 * 120.25934 * 196.15253 * 8 6 5 10 10 N 1.30854 * 121.65408 * 179.97438 * 9 8 6 11 11 C 1.33589 * 121.58941 * 0.02562 * 10 9 8 12 12 C 1.40638 * 121.63124 * 179.97438 * 11 10 9 13 13 N 1.31154 * 120.03875 * 180.02562 * 12 11 10 14 14 C 1.32488 * 122.88863 * 0.02562 * 13 12 11 15 15 C 1.36309 * 121.71694 * 0.02562 * 14 13 12 16 16 C 1.40602 * 118.64957 * 359.96723 * 15 14 13 17 17 C 1.38984 * 120.26248 * 16.12805 * 8 6 5 18 18 C 1.48115 * 105.93235 * 334.77698 * 5 4 2 19 19 C 1.54589 * 103.42223 * 39.02398 * 18 5 4 20 20 H 1.09005 * 110.57847 * 81.16966 * 19 18 5 21 21 C 1.53000 * 110.99147 * 204.37101 * 19 18 5 22 22 N 1.46501 * 109.47391 * 288.65580 * 21 19 18 23 23 C 1.36931 * 120.00115 * 179.97438 * 22 21 19 24 24 H 1.08004 * 119.99890 * 0.02562 * 23 22 21 25 25 C 1.38813 * 120.00010 * 179.97438 * 23 22 21 26 26 N 1.31619 * 119.99811 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99996 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47392 * 89.99601 * 27 25 23 29 29 H 1.48501 * 109.47229 * 210.00006 * 27 25 23 30 30 H 1.48500 * 109.46955 * 329.99627 * 27 25 23 31 31 H 1.09006 * 109.46917 * 180.68548 * 1 2 3 32 32 H 1.09001 * 109.47284 * 300.67802 * 1 2 3 33 33 H 1.08996 * 109.47458 * 60.68212 * 1 2 3 34 34 H 1.09009 * 109.91725 * 122.94794 * 4 2 1 35 35 H 1.09002 * 110.07523 * 1.76403 * 4 2 1 36 36 H 1.07999 * 119.17343 * 359.97438 * 9 8 6 37 37 H 1.08001 * 119.97801 * 0.02620 * 12 11 10 38 38 H 1.08003 * 119.14074 * 180.02562 * 14 13 12 39 39 H 1.08003 * 120.67623 * 180.02562 * 15 14 13 40 40 H 1.08003 * 121.11199 * 0.02562 * 17 8 6 41 41 H 1.09003 * 110.66447 * 157.51057 * 18 5 4 42 42 H 1.09001 * 110.66426 * 280.62504 * 18 5 4 43 43 H 1.09000 * 109.46660 * 48.65344 * 21 19 18 44 44 H 1.09001 * 109.47059 * 168.65088 * 21 19 18 45 45 H 0.96999 * 119.99718 * 359.97438 * 22 21 19 46 46 H 0.97004 * 119.99292 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0649 -0.7682 -1.2228 5 7 2.8298 -1.9203 -0.7102 6 6 3.0646 -3.0859 -1.3448 7 8 3.6210 -3.9948 -0.7602 8 6 2.6452 -3.2591 -2.7521 9 6 2.5703 -4.5452 -3.3161 10 7 2.2022 -4.7300 -4.5581 11 6 1.8795 -3.7053 -5.3522 12 6 1.4842 -3.9029 -6.6873 13 7 1.1747 -2.8740 -7.4395 14 6 1.2148 -1.6244 -7.0011 15 6 1.5856 -1.3245 -5.7242 16 6 1.9318 -2.3765 -4.8580 17 6 2.3215 -2.1522 -3.5277 18 6 3.2816 -1.5368 0.6472 19 6 2.0694 -0.7720 1.2263 20 1 1.3210 -1.4692 1.6032 21 6 2.5072 0.1967 2.3267 22 7 2.9002 -0.5617 3.5170 23 6 3.3318 0.0972 4.6370 24 1 3.3821 1.1761 4.6431 25 6 3.7037 -0.6213 5.7650 26 7 3.6410 -1.9360 5.7580 27 14 4.2918 0.2776 7.2932 28 1 3.1309 0.5752 8.1700 29 1 5.2608 -0.5754 8.0271 30 1 4.9514 1.5478 6.8972 31 1 -0.3633 -1.0277 0.0123 32 1 -0.3634 0.5243 0.8838 33 1 -0.3634 0.5032 -0.8960 34 1 2.7167 -0.1221 -1.8112 35 1 1.2354 -1.1172 -1.8377 36 1 2.8230 -5.4018 -2.7089 37 1 1.4355 -4.9024 -7.0934 38 1 0.9468 -0.8224 -7.6731 39 1 1.6120 -0.2996 -5.3843 40 1 2.3698 -1.1526 -3.1215 41 1 3.4982 -2.4222 1.2450 42 1 4.1541 -0.8856 0.5925 43 1 3.3539 0.7865 1.9757 44 1 1.6799 0.8612 2.5760 45 1 2.8547 -1.5306 3.5116 46 1 3.9013 -2.4381 6.5461 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106433389.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:09 Heat of formation + Delta-G solvation = 34.986316 kcal Electronic energy + Delta-G solvation = -28641.135893 eV Core-core repulsion = 24723.459331 eV Total energy + Delta-G solvation = -3917.676562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.47674 -41.25654 -39.46061 -38.66024 -36.55084 -35.18573 -34.12078 -33.06988 -32.78179 -31.58464 -30.55449 -27.89979 -27.29135 -26.30556 -25.54224 -24.74547 -23.75482 -22.69914 -21.35883 -21.16387 -19.82485 -19.13790 -18.68288 -18.31045 -17.51115 -17.16214 -16.81926 -16.54883 -16.16151 -15.93800 -15.71355 -15.37826 -15.21762 -15.16202 -14.88860 -14.56169 -14.45706 -14.27893 -14.02256 -13.73629 -13.61321 -13.45998 -13.34707 -13.09406 -12.91558 -12.74737 -12.45302 -12.13594 -11.98114 -11.93672 -11.75008 -11.59113 -11.44830 -11.36093 -10.99233 -10.92837 -10.54226 -10.50279 -9.84550 -9.54638 -8.99173 -7.94194 -5.23340 -1.09459 -0.64775 0.61632 1.35072 1.47403 1.49258 1.57660 1.66458 2.08793 2.56370 2.91344 2.94079 3.12291 3.24513 3.39360 3.43706 3.45421 3.50571 3.58790 3.67477 3.79473 3.90686 4.15002 4.19317 4.23616 4.27806 4.34969 4.43576 4.48605 4.52901 4.60234 4.63288 4.76566 4.81256 4.81962 4.87985 4.91508 4.98546 5.06638 5.18208 5.21555 5.26761 5.35176 5.49163 5.50134 5.54094 6.27404 6.32604 6.51750 6.85411 6.87083 7.33484 8.10529 8.31124 9.29461 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024049 B = 0.002232 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.999751 B =12543.891315 C =13384.246336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 H 0.113 0.887 4 C 0.087 3.913 5 N -0.610 5.610 6 C 0.573 3.427 7 O -0.577 6.577 8 C -0.175 4.175 9 C 0.173 3.827 10 N -0.474 5.474 11 C 0.062 3.938 12 C 0.149 3.851 13 N -0.482 5.482 14 C 0.065 3.935 15 C -0.118 4.118 16 C -0.098 4.098 17 C -0.012 4.012 18 C 0.117 3.883 19 C -0.094 4.094 20 H 0.063 0.937 21 C 0.165 3.835 22 N -0.749 5.749 23 C -0.240 4.240 24 H 0.081 0.919 25 C -0.081 4.081 26 N -0.972 5.972 27 Si 0.974 3.026 28 H -0.287 1.287 29 H -0.300 1.300 30 H -0.266 1.266 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.170 0.830 37 H 0.182 0.818 38 H 0.192 0.808 39 H 0.187 0.813 40 H 0.196 0.804 41 H 0.048 0.952 42 H 0.083 0.917 43 H 0.033 0.967 44 H 0.032 0.968 45 H 0.371 0.629 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.721 6.621 -28.773 30.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 H 0.131 0.869 4 C -0.034 4.034 5 N -0.342 5.342 6 C 0.363 3.637 7 O -0.457 6.457 8 C -0.181 4.181 9 C -0.002 4.002 10 N -0.182 5.182 11 C -0.061 4.061 12 C -0.023 4.023 13 N -0.191 5.191 14 C -0.078 4.078 15 C -0.138 4.138 16 C -0.105 4.105 17 C -0.038 4.038 18 C -0.005 4.005 19 C -0.114 4.114 20 H 0.082 0.918 21 C 0.038 3.962 22 N -0.391 5.391 23 C -0.372 4.372 24 H 0.099 0.901 25 C -0.273 4.273 26 N -0.624 5.624 27 Si 0.803 3.197 28 H -0.214 1.214 29 H -0.227 1.227 30 H -0.190 1.190 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.130 0.870 35 H 0.119 0.881 36 H 0.187 0.813 37 H 0.199 0.801 38 H 0.209 0.791 39 H 0.205 0.795 40 H 0.213 0.787 41 H 0.067 0.933 42 H 0.101 0.899 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.202 0.798 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.727 5.441 -29.800 31.262 hybrid contribution 0.875 0.079 2.839 2.971 sum -6.852 5.520 -26.961 28.361 Atomic orbital electron populations 1.21847 0.92954 1.01710 1.03310 1.22130 0.97269 1.00262 0.91187 0.86891 1.23025 0.96392 0.86553 0.97405 1.48740 1.52792 1.15044 1.17594 1.18000 0.78878 0.80836 0.85988 1.90818 1.45363 1.41214 1.68351 1.20834 1.06508 0.96552 0.94237 1.23163 0.90204 0.96225 0.90596 1.67983 1.11765 1.33786 1.04677 1.20413 0.99190 0.89751 0.96766 1.23309 0.92271 0.99499 0.87234 1.67507 1.12739 1.00715 1.38101 1.22925 0.96020 0.93638 0.95207 1.22403 0.97100 1.00601 0.93659 1.19177 1.01012 0.94894 0.95389 1.23019 0.88650 1.00927 0.91227 1.22365 0.97642 0.98702 0.81790 1.22341 0.96254 0.97299 0.95534 0.91848 1.20812 0.96939 0.93096 0.85326 1.42653 1.79293 1.05694 1.11499 1.19656 1.34220 0.91834 0.91492 0.90102 1.25616 1.03767 0.96234 1.01661 1.69841 1.56345 1.06192 1.29974 0.85132 0.77408 0.77630 0.79552 1.21443 1.22663 1.19033 0.93774 0.92655 0.89284 0.86985 0.88079 0.81340 0.80064 0.79079 0.79539 0.78737 0.93287 0.89896 0.94933 0.95044 0.79809 0.94187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.90 71.98 0.64 -1.42 16 2 C -0.09 -1.48 3.17 -9.91 -0.03 -1.51 16 3 H 0.11 1.47 7.85 -2.39 -0.02 1.45 16 4 C 0.09 1.17 4.66 86.53 0.40 1.58 16 5 N -0.61 -14.82 3.29 -813.47 -2.68 -17.50 16 6 C 0.57 16.24 7.77 86.79 0.67 16.91 16 7 O -0.58 -22.02 16.65 -3.88 -0.06 -22.08 16 8 C -0.17 -3.77 5.82 -19.97 -0.12 -3.88 16 9 C 0.17 4.01 10.72 85.42 0.92 4.93 16 10 N -0.47 -10.66 10.33 -187.60 -1.94 -12.60 16 11 C 0.06 1.18 6.62 40.36 0.27 1.45 16 12 C 0.15 2.48 11.25 85.38 0.96 3.44 16 13 N -0.48 -7.46 10.28 -195.39 -2.01 -9.47 16 14 C 0.06 0.62 11.08 84.14 0.93 1.56 16 15 C -0.12 -0.92 9.88 22.40 0.22 -0.70 16 16 C -0.10 -1.41 5.75 -21.27 -0.12 -1.53 16 17 C -0.01 -0.17 8.10 22.98 0.19 0.01 16 18 C 0.12 3.60 6.47 86.61 0.56 4.16 16 19 C -0.09 -2.67 2.60 -9.70 -0.03 -2.70 16 20 H 0.06 2.08 7.86 -2.38 -0.02 2.06 16 21 C 0.16 5.86 5.58 86.38 0.48 6.34 16 22 N -0.75 -37.09 5.52 -343.45 -1.90 -38.98 16 23 C -0.24 -13.15 9.99 84.03 0.84 -12.31 16 24 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 25 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 26 N -0.97 -60.68 13.06 21.65 0.28 -60.40 16 27 Si 0.97 46.11 29.55 68.60 2.03 48.13 16 28 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 29 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 30 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 31 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.11 0.74 7.18 -2.38 -0.02 0.72 16 35 H 0.10 0.97 5.88 -2.39 -0.01 0.96 16 36 H 0.17 3.98 7.72 -2.91 -0.02 3.96 16 37 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 38 H 0.19 0.55 8.06 -2.91 -0.02 0.52 16 39 H 0.19 -0.12 8.06 -2.91 -0.02 -0.14 16 40 H 0.20 1.36 4.07 -2.91 -0.01 1.35 16 41 H 0.05 1.93 7.81 -2.39 -0.02 1.91 16 42 H 0.08 2.46 7.95 -2.39 -0.02 2.44 16 43 H 0.03 1.11 8.00 -2.39 -0.02 1.09 16 44 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.37 20.19 7.67 -92.71 -0.71 19.48 16 46 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -79.25 378.73 1.29 -77.96 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.31 Total: 22.80 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 7.25 Total: 12.13 kcal Atomic # 7 Polarization: -130.71 SS G_CDS: -8.24 Total: -138.95 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.06 Total: -22.08 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -79.25 1.29 -77.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106433389.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.949 kcal (2) G-P(sol) polarization free energy of solvation -79.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds