Wall clock time and date at job start Wed Apr 1 2020 00:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 110.80371 * 2 1 4 4 C 1.54944 * 110.73771 * 236.70692 * 2 1 3 5 5 N 1.48116 * 103.25988 * 279.04367 * 4 2 1 6 6 C 1.34774 * 127.03456 * 140.74407 * 5 4 2 7 7 O 1.21536 * 120.00038 * 354.62016 * 6 5 4 8 8 C 1.47912 * 119.99764 * 174.62492 * 6 5 4 9 9 N 1.32378 * 120.63782 * 5.44111 * 8 6 5 10 10 N 1.28090 * 123.18288 * 179.97438 * 9 8 6 11 11 C 1.31799 * 123.49885 * 359.97438 * 10 9 8 12 12 C 1.40407 * 119.13400 * 0.02562 * 11 10 9 13 13 C 1.40232 * 122.73277 * 179.97438 * 12 11 10 14 14 C 1.36261 * 119.36601 * 180.02562 * 13 12 11 15 15 C 1.39377 * 121.07285 * 0.02562 * 14 13 12 16 16 C 1.36365 * 121.09319 * 359.97438 * 15 14 13 17 17 C 1.39840 * 119.41376 * 359.74597 * 16 15 14 18 18 C 1.47489 * 105.92857 * 320.70797 * 5 4 2 19 19 C 1.54003 * 107.08577 * 25.44756 * 18 5 4 20 20 H 1.09005 * 110.32617 * 239.70107 * 19 18 5 21 21 C 1.52998 * 110.32897 * 117.58875 * 19 18 5 22 22 N 1.46498 * 109.47129 * 66.44871 * 21 19 18 23 23 C 1.36932 * 119.99871 * 180.27381 * 22 21 19 24 24 H 1.07999 * 120.00399 * 359.73295 * 23 22 21 25 25 C 1.38816 * 119.99921 * 179.72600 * 23 22 21 26 26 N 1.31611 * 120.00096 * 0.02562 * 25 23 22 27 27 Si 1.86808 * 119.99812 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47012 * 0.02562 * 27 25 23 29 29 H 1.48496 * 109.47079 * 120.00330 * 27 25 23 30 30 H 1.48504 * 109.46671 * 240.00291 * 27 25 23 31 31 H 1.09000 * 109.46852 * 296.70703 * 1 2 3 32 32 H 1.08997 * 109.47148 * 56.70553 * 1 2 3 33 33 H 1.09004 * 109.47334 * 176.70998 * 1 2 3 34 34 H 1.08996 * 110.66240 * 160.59603 * 4 2 1 35 35 H 1.09007 * 110.79930 * 37.55123 * 4 2 1 36 36 H 1.07992 * 120.43595 * 179.97438 * 11 10 9 37 37 H 1.07993 * 120.31914 * 0.05094 * 13 12 11 38 38 H 1.08000 * 119.46473 * 180.02562 * 14 13 12 39 39 H 1.08003 * 119.45219 * 179.97438 * 15 14 13 40 40 H 1.08001 * 120.29386 * 179.97438 * 16 15 14 41 41 H 1.09005 * 109.90856 * 266.08540 * 18 5 4 42 42 H 1.08993 * 110.07308 * 144.89909 * 18 5 4 43 43 H 1.09006 * 109.46709 * 306.45280 * 21 19 18 44 44 H 1.08997 * 109.47491 * 186.45669 * 21 19 18 45 45 H 0.96998 * 119.99859 * 0.02562 * 22 21 19 46 46 H 0.96999 * 120.00015 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0787 -0.7954 -1.2112 5 7 1.9870 -2.2039 -0.7623 6 6 1.6232 -3.2698 -1.5026 7 8 1.2328 -3.1130 -2.6428 8 6 1.6991 -4.6303 -0.9273 9 7 2.0192 -4.8080 0.3448 10 7 2.0986 -5.9629 0.8931 11 6 1.8702 -7.0906 0.2502 12 6 1.5204 -7.0439 -1.1088 13 6 1.2617 -8.1961 -1.8652 14 6 0.9281 -8.0710 -3.1804 15 6 0.8406 -6.8180 -3.7844 16 6 1.0856 -5.6773 -3.0784 17 6 1.4250 -5.7669 -1.7248 18 6 2.3762 -2.2015 0.6603 19 6 2.0775 -0.7938 1.2087 20 1 2.9907 -0.3322 1.5845 21 6 1.0253 -0.8673 2.3170 22 7 1.5802 -1.5795 3.4707 23 6 0.8138 -1.7739 4.5886 24 1 -0.1982 -1.3984 4.6216 25 6 1.3377 -2.4538 5.6797 26 7 2.5712 -2.9111 5.6397 27 14 0.2919 -2.7195 7.2046 28 1 -1.0480 -2.1137 6.9976 29 1 0.1430 -4.1756 7.4551 30 1 0.9494 -2.0809 8.3730 31 1 -0.3633 0.4619 0.9180 32 1 -0.3633 0.5641 -0.8590 33 1 -0.3634 -1.0260 -0.0590 34 1 3.1144 -0.5227 -1.4132 35 1 1.4602 -0.6320 -2.0938 36 1 1.9518 -8.0381 0.7618 37 1 1.3259 -9.1731 -1.4096 38 1 0.7281 -8.9573 -3.7643 39 1 0.5744 -6.7493 -4.8288 40 1 1.0146 -4.7130 -3.5595 41 1 3.4402 -2.4186 0.7544 42 1 1.7961 -2.9441 1.2080 43 1 0.1474 -1.3989 1.9497 44 1 0.7407 0.1417 2.6153 45 1 2.4893 -1.9166 3.4412 46 1 2.9371 -3.3865 6.4019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569843627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:20 Heat of formation + Delta-G solvation = 50.877129 kcal Electronic energy + Delta-G solvation = -29707.870320 eV Core-core repulsion = 25790.882836 eV Total energy + Delta-G solvation = -3916.987485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.65117 -41.13446 -39.36261 -38.99875 -36.36973 -34.71647 -34.11662 -32.89963 -32.84056 -31.42958 -30.45883 -28.44308 -26.83312 -26.49671 -25.39751 -24.83345 -23.98567 -23.02505 -21.16447 -20.44720 -19.68790 -19.15362 -18.97644 -18.04892 -17.65964 -17.05156 -17.02107 -16.71060 -16.36520 -15.65546 -15.53111 -15.36800 -15.29675 -15.09207 -14.89196 -14.55914 -14.21792 -14.14210 -13.68292 -13.61802 -13.33781 -13.25831 -13.10425 -13.00875 -12.79310 -12.75124 -12.57606 -12.28841 -12.10430 -11.86886 -11.76243 -11.62366 -11.54840 -11.34242 -10.94255 -10.82108 -10.68732 -10.43138 -9.84186 -9.55603 -8.93457 -7.89789 -5.17951 -1.14572 -0.47281 0.50505 1.40984 1.46257 1.47929 1.57374 1.66077 2.01565 2.57974 2.67875 2.85570 3.17740 3.31626 3.42533 3.50915 3.57091 3.59231 3.69315 3.83196 3.87160 4.17360 4.18415 4.23170 4.31589 4.34931 4.38942 4.56091 4.57653 4.64898 4.69106 4.76509 4.83022 4.85548 4.89292 4.97328 4.99443 5.15672 5.16405 5.21080 5.27414 5.30368 5.32928 5.38436 5.52034 5.55319 5.74394 6.25552 6.31805 6.76575 7.38230 7.60805 8.14830 8.38265 9.33664 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010349 B = 0.003813 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.007524 B = 7341.074768 C = 9485.678700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 H 0.124 0.876 4 C 0.106 3.894 5 N -0.592 5.592 6 C 0.592 3.408 7 O -0.548 6.548 8 C 0.038 3.962 9 N -0.241 5.241 10 N -0.313 5.313 11 C 0.112 3.888 12 C -0.103 4.103 13 C -0.082 4.082 14 C -0.091 4.091 15 C -0.084 4.084 16 C -0.121 4.121 17 C -0.068 4.068 18 C 0.113 3.887 19 C -0.100 4.100 20 H 0.092 0.908 21 C 0.168 3.832 22 N -0.742 5.742 23 C -0.244 4.244 24 H 0.071 0.929 25 C -0.071 4.071 26 N -0.963 5.963 27 Si 0.968 3.032 28 H -0.268 1.268 29 H -0.296 1.296 30 H -0.290 1.290 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.027 0.973 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.220 0.780 37 H 0.181 0.819 38 H 0.177 0.823 39 H 0.164 0.836 40 H 0.156 0.844 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.009 0.991 44 H 0.029 0.971 45 H 0.374 0.626 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.900 -7.679 -23.427 24.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 H 0.142 0.858 4 C -0.015 4.015 5 N -0.323 5.323 6 C 0.379 3.621 7 O -0.427 6.427 8 C -0.120 4.120 9 N -0.076 5.076 10 N -0.144 5.144 11 C -0.061 4.061 12 C -0.110 4.110 13 C -0.101 4.101 14 C -0.110 4.110 15 C -0.103 4.103 16 C -0.140 4.140 17 C -0.075 4.075 18 C -0.010 4.010 19 C -0.119 4.119 20 H 0.111 0.889 21 C 0.042 3.958 22 N -0.385 5.385 23 C -0.376 4.376 24 H 0.089 0.911 25 C -0.264 4.264 26 N -0.614 5.614 27 Si 0.797 3.203 28 H -0.193 1.193 29 H -0.223 1.223 30 H -0.217 1.217 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.046 0.954 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.236 0.764 37 H 0.198 0.802 38 H 0.195 0.805 39 H 0.182 0.818 40 H 0.173 0.827 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.027 0.973 44 H 0.047 0.953 45 H 0.206 0.794 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.846 -6.829 -22.423 23.512 hybrid contribution -0.332 -0.973 0.263 1.061 sum -2.179 -7.802 -22.160 23.594 Atomic orbital electron populations 1.21771 0.94584 1.00676 1.02641 1.22290 0.96350 1.00084 0.91815 0.85823 1.22878 1.02780 0.77693 0.98161 1.48699 1.63357 1.08011 1.12214 1.17151 0.77838 0.82609 0.84548 1.90566 1.49075 1.85060 1.18026 1.23078 1.00382 0.95467 0.93113 1.73007 1.08433 1.17213 1.08993 1.72737 1.14570 0.95169 1.31890 1.25560 0.88924 1.00030 0.91620 1.19240 1.01816 0.94550 0.95427 1.21466 0.96782 0.97412 0.94482 1.21671 0.95498 0.98963 0.94844 1.21695 0.95087 0.91604 1.01920 1.21903 0.97785 1.02591 0.91741 1.18836 0.99960 0.92210 0.96542 1.22329 1.00136 0.98790 0.79729 1.22307 0.99704 0.94493 0.95412 0.88927 1.20846 0.94256 0.94462 0.86264 1.42574 1.14922 1.67468 1.13517 1.19587 0.96148 1.28660 0.93163 0.91148 1.25500 0.97780 1.01674 1.01452 1.69826 1.15846 1.44222 1.31511 0.85154 0.78359 0.76905 0.79841 1.19268 1.22294 1.21684 0.92014 0.90535 0.95364 0.88415 0.88788 0.76362 0.80218 0.80534 0.81807 0.82665 0.92149 0.90008 0.97269 0.95307 0.79365 0.94129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 7.99 71.98 0.57 -3.01 16 2 C -0.09 -2.09 3.60 -9.58 -0.03 -2.12 16 3 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 4 C 0.11 2.57 6.55 86.73 0.57 3.13 16 5 N -0.59 -19.11 3.19 -812.72 -2.59 -21.70 16 6 C 0.59 20.52 7.85 86.81 0.68 21.20 16 7 O -0.55 -18.86 13.78 -3.83 -0.05 -18.91 16 8 C 0.04 1.34 6.87 42.44 0.29 1.63 16 9 N -0.24 -9.63 7.99 -47.73 -0.38 -10.01 16 10 N -0.31 -11.77 11.41 -56.16 -0.64 -12.41 16 11 C 0.11 2.92 11.20 85.23 0.95 3.87 16 12 C -0.10 -2.40 5.75 -21.31 -0.12 -2.53 16 13 C -0.08 -1.07 9.84 22.29 0.22 -0.85 16 14 C -0.09 -0.94 9.95 22.08 0.22 -0.72 16 15 C -0.08 -1.22 9.95 22.11 0.22 -1.00 16 16 C -0.12 -2.88 9.27 22.22 0.21 -2.67 16 17 C -0.07 -1.98 5.77 -21.12 -0.12 -2.10 16 18 C 0.11 4.11 5.35 86.53 0.46 4.57 16 19 C -0.10 -3.27 3.00 -9.90 -0.03 -3.30 16 20 H 0.09 2.94 8.14 -2.38 -0.02 2.92 16 21 C 0.17 6.99 4.17 86.38 0.36 7.35 16 22 N -0.74 -39.47 5.33 -343.46 -1.83 -41.30 16 23 C -0.24 -14.25 9.99 84.04 0.84 -13.41 16 24 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 25 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 26 N -0.96 -61.18 13.06 21.65 0.28 -60.90 16 27 Si 0.97 48.03 29.55 68.60 2.03 50.05 16 28 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 29 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 30 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 31 H 0.06 1.64 6.67 -2.39 -0.02 1.63 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.03 0.87 7.61 -2.38 -0.02 0.85 16 34 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.09 2.17 7.73 -2.38 -0.02 2.15 16 36 H 0.22 3.46 8.06 -2.91 -0.02 3.44 16 37 H 0.18 0.90 8.06 -2.91 -0.02 0.88 16 38 H 0.18 0.35 8.06 -2.91 -0.02 0.32 16 39 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 40 H 0.16 4.16 5.12 -2.91 -0.01 4.14 16 41 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 42 H 0.08 3.65 5.54 -2.39 -0.01 3.63 16 43 H 0.01 0.42 6.85 -2.38 -0.02 0.40 16 44 H 0.03 1.17 7.55 -2.39 -0.02 1.15 16 45 H 0.37 21.20 7.51 -92.71 -0.70 20.50 16 46 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -81.38 371.88 2.90 -78.48 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: 0.32 Total: 30.45 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 5.76 Total: 6.24 kcal Atomic # 7 Polarization: -141.16 SS G_CDS: -5.16 Total: -146.32 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.05 Total: -18.91 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.05 kcal Total: -81.38 2.90 -78.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569843627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.360 kcal (2) G-P(sol) polarization free energy of solvation -81.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds