Wall clock time and date at job start Tue Mar 31 2020 22:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47210 * 2 1 4 4 C 1.53003 * 109.47084 * 120.00170 * 2 1 3 5 5 N 1.46498 * 109.47460 * 65.56803 * 4 2 1 6 6 C 1.36763 * 127.14105 * 84.44932 * 5 4 2 7 7 C 1.50691 * 126.34244 * 359.97438 * 6 5 4 8 8 C 1.53000 * 109.47246 * 95.00384 * 7 6 5 9 9 C 1.50703 * 109.47552 * 184.91534 * 8 7 6 10 10 N 1.34775 * 119.99988 * 179.97438 * 9 8 7 11 11 O 1.21279 * 119.99394 * 0.02562 * 9 8 7 12 12 N 1.30300 * 107.31480 * 180.02562 * 6 5 4 13 13 N 1.28532 * 110.08056 * 359.76243 * 12 6 5 14 14 C 1.31284 * 109.85372 * 0.39487 * 13 12 6 15 15 S 1.76206 * 126.48053 * 179.88490 * 14 13 12 16 16 C 1.80999 * 99.99871 * 359.68270 * 15 14 13 17 17 H 1.09000 * 109.47326 * 305.00252 * 16 15 14 18 18 C 1.53000 * 109.47245 * 65.00373 * 16 15 14 19 19 C 1.53006 * 109.46734 * 185.00026 * 16 15 14 20 20 C 1.50702 * 109.46986 * 65.00319 * 19 16 15 21 21 H 1.07999 * 120.00095 * 359.97438 * 20 19 16 22 22 C 1.37871 * 119.99614 * 179.72310 * 20 19 16 23 23 N 1.31516 * 120.00411 * 0.27438 * 22 20 19 24 24 Si 1.86804 * 119.99755 * 180.27661 * 22 20 19 25 25 H 1.48495 * 109.47409 * 89.99691 * 24 22 20 26 26 H 1.48504 * 109.46850 * 210.00068 * 24 22 20 27 27 H 1.48503 * 109.47018 * 329.99707 * 24 22 20 28 28 H 1.09006 * 109.47110 * 184.62904 * 1 2 3 29 29 H 1.09003 * 109.47244 * 304.62357 * 1 2 3 30 30 H 1.08998 * 109.47013 * 64.62494 * 1 2 3 31 31 H 1.08998 * 109.46827 * 239.99754 * 2 1 3 32 32 H 1.08990 * 109.47034 * 179.97438 * 3 2 1 33 33 H 1.08991 * 109.46710 * 300.00267 * 3 2 1 34 34 H 1.09002 * 109.46720 * 60.00040 * 3 2 1 35 35 H 1.09009 * 109.46764 * 305.56607 * 4 2 1 36 36 H 1.09000 * 109.46932 * 185.57370 * 4 2 1 37 37 H 1.08995 * 109.47397 * 215.00493 * 7 6 5 38 38 H 1.09007 * 109.47389 * 335.00764 * 7 6 5 39 39 H 1.09005 * 109.47078 * 304.91468 * 8 7 6 40 40 H 1.09002 * 109.47140 * 64.91153 * 8 7 6 41 41 H 0.97002 * 120.00066 * 359.97438 * 10 9 8 42 42 H 0.96999 * 119.99767 * 180.02562 * 10 9 8 43 43 H 1.08992 * 109.47363 * 180.02562 * 18 16 15 44 44 H 1.09007 * 109.46761 * 299.99849 * 18 16 15 45 45 H 1.09000 * 109.47057 * 59.99714 * 18 16 15 46 46 H 1.08998 * 109.46987 * 304.99808 * 19 16 15 47 47 H 1.08998 * 109.46616 * 184.99818 * 19 16 15 48 48 H 0.96997 * 119.99791 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6642 -2.1358 1.1842 6 6 2.3370 -3.1403 0.5449 7 6 3.6188 -3.0013 -0.2351 8 6 4.8060 -3.3326 0.6715 9 6 6.0921 -3.0776 -0.0714 10 7 7.2755 -3.3010 0.5336 11 8 6.0621 -2.6704 -1.2134 12 7 1.6637 -4.2397 0.7342 13 7 0.6218 -4.0017 1.4483 14 6 0.5693 -2.7247 1.7486 15 16 -0.6747 -1.9238 2.7057 16 6 -1.7436 -3.3365 3.0769 17 1 -2.0391 -3.8228 2.1472 18 6 -0.9849 -4.3334 3.9552 19 6 -2.9914 -2.8510 3.8175 20 6 -3.8029 -1.9653 2.9075 21 1 -3.4625 -1.7680 1.9017 22 6 -4.9824 -1.4110 3.3573 23 7 -5.3967 -1.6509 4.5822 24 14 -5.9922 -0.3193 2.2268 25 1 -6.9613 -1.1521 1.4702 26 1 -6.7284 0.6848 3.0362 27 1 -5.0896 0.3773 1.2753 28 1 -0.3634 -1.0244 0.0829 29 1 -0.3634 0.5839 0.8457 30 1 -0.3633 0.4404 -0.9285 31 1 1.8933 -0.5139 -0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6767 1.9562 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.5975 -0.2682 2.1365 36 1 3.1254 -0.6357 1.3005 37 1 3.6054 -3.6878 -1.0815 38 1 3.7139 -1.9780 -0.5986 39 1 4.7698 -2.7044 1.5616 40 1 4.7576 -4.3813 0.9648 41 1 7.2994 -3.6256 1.4473 42 1 8.1033 -3.1365 0.0555 43 1 -1.6284 -5.1842 4.1783 44 1 -0.0959 -4.6792 3.4275 45 1 -0.6894 -3.8470 4.8849 46 1 -2.6930 -2.2876 4.7016 47 1 -3.5917 -3.7093 4.1191 48 1 -6.2268 -1.2612 4.8985 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412919107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:50 Heat of formation + Delta-G solvation = 2.535873 kcal Electronic energy + Delta-G solvation = -27838.030842 eV Core-core repulsion = 24054.391075 eV Total energy + Delta-G solvation = -3783.639767 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.72344 -39.85076 -37.12086 -34.62889 -34.27282 -34.01257 -33.09872 -32.09259 -29.80561 -27.45741 -27.28173 -26.98104 -25.37653 -23.31046 -22.48788 -21.51292 -20.70225 -20.59716 -19.92234 -17.77763 -17.56982 -16.99849 -16.39504 -16.34000 -16.02687 -15.68891 -15.24795 -14.88227 -14.56648 -14.35832 -14.04461 -13.60675 -13.47320 -13.21665 -12.97568 -12.69112 -12.52218 -12.43147 -12.18316 -11.86377 -11.74742 -11.66098 -11.55497 -11.32328 -11.14834 -11.05525 -10.98777 -10.79777 -10.67142 -10.52482 -10.42101 -10.20252 -10.12423 -10.01209 -9.62823 -9.45022 -9.35756 -9.16403 -8.41885 -7.04546 -6.06710 -4.08994 1.62567 1.81468 2.23120 2.69126 2.91579 2.95989 3.18786 3.30223 3.36754 3.40535 4.19477 4.35468 4.42254 4.47307 4.51741 4.60703 4.76275 4.86575 4.99069 5.10131 5.16527 5.24525 5.30751 5.38096 5.54657 5.61766 5.65286 5.73252 5.76227 5.82148 5.88766 5.94948 5.98819 6.08220 6.16471 6.21332 6.33007 6.39842 6.57855 6.63297 6.82606 6.86267 6.87474 7.49346 7.53617 7.83015 7.90446 8.26809 8.89316 8.96043 9.55496 11.04282 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.016463 B = 0.002966 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.352747 B = 9437.061534 C =10591.295250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.144 4.144 4 C 0.109 3.891 5 N -0.462 5.462 6 C 0.162 3.838 7 C -0.010 4.010 8 C -0.138 4.138 9 C 0.520 3.480 10 N -0.857 5.857 11 O -0.542 6.542 12 N -0.284 5.284 13 N -0.298 5.298 14 C 0.170 3.830 15 S 0.015 5.985 16 C -0.055 4.055 17 H 0.090 0.910 18 C -0.147 4.147 19 C 0.037 3.963 20 C -0.521 4.521 21 H 0.063 0.937 22 C 0.061 3.939 23 N -0.893 5.893 24 Si 0.890 3.110 25 H -0.280 1.280 26 H -0.287 1.287 27 H -0.272 1.272 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.403 0.597 42 H 0.401 0.599 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.053 0.947 46 H 0.026 0.974 47 H 0.040 0.960 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.768 2.067 -4.969 24.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.130 4.130 3 C -0.202 4.202 4 C -0.014 4.014 5 N -0.156 5.156 6 C -0.108 4.108 7 C -0.051 4.051 8 C -0.179 4.179 9 C 0.305 3.695 10 N -0.421 5.421 11 O -0.418 6.418 12 N -0.124 5.124 13 N -0.142 5.142 14 C -0.204 4.204 15 S 0.245 5.755 16 C -0.184 4.184 17 H 0.109 0.891 18 C -0.207 4.207 19 C -0.002 4.002 20 C -0.560 4.560 21 H 0.081 0.919 22 C -0.141 4.141 23 N -0.532 5.532 24 Si 0.718 3.282 25 H -0.206 1.206 26 H -0.213 1.213 27 H -0.196 1.196 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.121 0.879 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.124 0.876 41 H 0.231 0.769 42 H 0.232 0.768 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.045 0.955 47 H 0.058 0.942 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 22.890 2.053 -5.313 23.588 hybrid contribution 0.163 0.542 -0.516 0.766 sum 23.053 2.595 -5.829 23.920 Atomic orbital electron populations 1.21972 0.93218 1.03425 1.02546 1.21525 0.97922 0.96587 0.96966 1.21773 1.00748 0.94802 1.02856 1.22081 1.01292 0.76965 1.01025 1.46428 1.19114 1.09558 1.40534 1.24696 0.99170 0.84886 1.02023 1.19619 0.84786 1.04676 0.95990 1.21646 0.91473 1.05198 0.99593 1.20611 0.85829 0.76258 0.86770 1.43889 1.08418 1.70776 1.18995 1.90772 1.87712 1.45251 1.18105 1.73893 1.02445 1.22271 1.13784 1.74708 1.14435 1.10309 1.14771 1.27617 0.95000 0.94030 1.03719 1.85997 1.15867 1.14755 1.58918 1.23647 0.97640 0.93793 1.03324 0.89121 1.22129 1.00528 0.98736 0.99269 1.19100 0.88464 0.97233 0.95367 1.21249 1.06072 1.29136 0.99541 0.91854 1.24977 0.97526 0.96542 0.95037 1.69951 1.22457 1.44697 1.16124 0.86609 0.80374 0.80453 0.80763 1.20628 1.21251 1.19627 0.91848 0.91375 0.92405 0.90640 0.92544 0.91776 0.91952 0.88012 0.89009 0.87852 0.89277 0.88758 0.87606 0.76900 0.76792 0.92016 0.91688 0.92757 0.95542 0.94160 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.64 37.16 0.32 -1.67 16 2 C -0.11 -1.12 3.12 -90.62 -0.28 -1.41 16 3 C -0.14 -1.14 9.19 37.16 0.34 -0.80 16 4 C 0.11 1.13 5.07 -4.04 -0.02 1.11 16 5 N -0.46 -6.38 2.52 -113.53 -0.29 -6.67 16 6 C 0.16 2.23 7.32 -153.99 -1.13 1.10 16 7 C -0.01 -0.11 4.92 -27.89 -0.14 -0.24 16 8 C -0.14 -1.02 5.68 -27.88 -0.16 -1.18 16 9 C 0.52 4.15 8.10 -10.98 -0.09 4.06 16 10 N -0.86 -3.68 8.87 31.22 0.28 -3.40 16 11 O -0.54 -6.59 16.76 5.56 0.09 -6.49 16 12 N -0.28 -4.93 12.18 32.99 0.40 -4.52 16 13 N -0.30 -5.67 9.73 30.68 0.30 -5.37 16 14 C 0.17 2.93 6.55 -88.34 -0.58 2.35 16 15 S 0.01 0.28 19.39 -107.50 -2.08 -1.81 16 16 C -0.05 -1.14 2.29 -26.73 -0.06 -1.20 16 17 H 0.09 1.99 8.14 -51.92 -0.42 1.57 16 18 C -0.15 -2.69 9.01 37.16 0.33 -2.36 16 19 C 0.04 0.91 4.44 -27.88 -0.12 0.79 16 20 C -0.52 -14.01 8.53 -34.44 -0.29 -14.30 16 21 H 0.06 1.69 7.60 -52.49 -0.40 1.29 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 23 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 24 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 28 H 0.06 1.00 6.01 -51.93 -0.31 0.69 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.79 7.97 -51.93 -0.41 0.38 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 1.07 7.70 -51.92 -0.40 0.68 16 36 H 0.09 0.70 8.07 -51.93 -0.42 0.28 16 37 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.09 0.84 7.50 -51.93 -0.39 0.45 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.40 0.65 8.83 -40.82 -0.36 0.29 16 42 H 0.40 1.42 8.93 -40.82 -0.36 1.06 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.06 1.19 5.90 -51.93 -0.31 0.88 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 404.58 15.07 6.10 6.10 Total: -1.00 -33.92 404.58 -9.46 -43.38 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -7.99 Total: -0.11 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -1.97 Total: -12.14 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 1.43 Total: -45.13 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: 0.09 Total: -6.49 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -2.08 Total: -1.81 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.92 -9.46 -43.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412919107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.914 kcal (2) G-P(sol) polarization free energy of solvation -33.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds