Wall clock time and date at job start Tue Mar 31 2020 22:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34773 * 120.00265 * 2 1 4 4 O 1.21589 * 120.00367 * 181.38874 * 3 2 1 5 5 C 1.47525 * 119.99913 * 1.38615 * 3 2 1 6 6 C 1.39596 * 120.21828 * 25.55601 * 5 3 2 7 7 C 1.37855 * 119.96871 * 180.02562 * 6 5 3 8 8 C 1.38574 * 120.41187 * 359.97438 * 7 6 5 9 9 C 1.37970 * 120.44905 * 0.02562 * 8 7 6 10 10 C 1.39248 * 120.01603 * 359.72183 * 9 8 7 11 11 C 1.48175 * 120.20450 * 180.27140 * 10 9 8 12 12 C 1.40978 * 126.25377 * 129.94129 * 11 10 9 13 13 N 1.30622 * 108.06929 * 179.87935 * 12 11 10 14 14 N 1.39996 * 108.57226 * 0.38862 * 13 12 11 15 15 H 0.97001 * 125.86659 * 179.71577 * 14 13 12 16 16 C 1.34699 * 108.26987 * 359.75285 * 14 13 12 17 17 C 1.46504 * 120.00174 * 179.97438 * 2 1 3 18 18 H 1.08994 * 110.88929 * 183.88139 * 17 2 1 19 19 C 1.55160 * 111.00319 * 59.99951 * 17 2 1 20 20 C 1.54321 * 102.94331 * 206.42826 * 19 17 2 21 21 N 1.47021 * 107.27423 * 22.18735 * 20 19 17 22 22 C 1.36933 * 125.65093 * 181.02261 * 21 20 19 23 23 H 1.08004 * 120.00122 * 186.28306 * 22 21 20 24 24 C 1.38810 * 120.00111 * 6.28422 * 22 21 20 25 25 N 1.31624 * 119.99765 * 8.42677 * 24 22 21 26 26 Si 1.86800 * 120.00066 * 188.14623 * 24 22 21 27 27 H 1.48500 * 109.47226 * 265.29666 * 26 24 22 28 28 H 1.48498 * 109.47196 * 25.29536 * 26 24 22 29 29 H 1.48502 * 109.46802 * 145.29759 * 26 24 22 30 30 C 1.47425 * 108.70028 * 1.29465 * 21 20 19 31 31 H 1.09000 * 109.47056 * 263.99916 * 1 2 3 32 32 H 1.08998 * 109.47553 * 24.00043 * 1 2 3 33 33 H 1.09007 * 109.47340 * 144.00350 * 1 2 3 34 34 H 1.07997 * 120.01689 * 0.02562 * 6 5 3 35 35 H 1.07996 * 119.79553 * 179.97438 * 7 6 5 36 36 H 1.08005 * 119.77316 * 180.02562 * 8 7 6 37 37 H 1.07997 * 119.99110 * 180.02562 * 9 8 7 38 38 H 1.08001 * 125.96581 * 0.02562 * 12 11 10 39 39 H 1.08001 * 126.19784 * 180.02562 * 16 14 13 40 40 H 1.08994 * 110.72159 * 88.05953 * 19 17 2 41 41 H 1.09007 * 110.87213 * 324.85690 * 19 17 2 42 42 H 1.09007 * 109.88178 * 262.77364 * 20 19 17 43 43 H 1.09004 * 110.01479 * 141.68515 * 20 19 17 44 44 H 0.96999 * 119.99964 * 179.72977 * 25 24 22 45 45 H 1.08994 * 110.36998 * 94.47613 * 30 21 20 46 46 H 1.09000 * 110.36737 * 216.80496 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3545 1.1673 -0.0255 5 6 1.4016 2.4446 0.0309 6 6 0.1190 2.5025 0.5790 7 6 -0.5655 3.6988 0.6048 8 6 0.0117 4.8485 0.0896 9 6 1.2783 4.8108 -0.4562 10 6 1.9883 3.6132 -0.4869 11 6 3.3512 3.5693 -1.0665 12 6 4.4965 3.0116 -0.4625 13 7 5.5017 3.1635 -1.2826 14 7 5.0460 3.8259 -2.4287 15 1 5.5859 4.0698 -3.1967 16 6 3.7290 4.0672 -2.2814 17 6 2.1975 -1.2687 0.0006 18 1 3.2717 -1.0973 0.0694 19 6 1.8484 -2.1131 -1.2535 20 6 2.1063 -3.5589 -0.7796 21 7 2.0265 -3.5578 0.6885 22 6 2.2161 -4.6453 1.4988 23 1 2.0365 -4.5652 2.5608 24 6 2.6392 -5.8505 0.9554 25 7 3.0170 -5.9079 -0.3041 26 14 2.6799 -7.3892 2.0138 27 1 4.0418 -7.5654 2.5789 28 1 1.6985 -7.2550 3.1202 29 1 2.3317 -8.5702 1.1836 30 6 1.7020 -2.1936 1.1433 31 1 -0.3633 -0.1074 1.0220 32 1 -0.3634 0.9388 -0.4180 33 1 -0.3634 -0.8315 -0.6040 34 1 -0.3367 1.6105 0.9827 35 1 -1.5577 3.7403 1.0291 36 1 -0.5337 5.7803 0.1154 37 1 1.7212 5.7113 -0.8552 38 1 4.5354 2.5389 0.5078 39 1 3.0878 4.5638 -2.9946 40 1 2.5042 -1.8571 -2.0856 41 1 0.8032 -1.9795 -1.5329 42 1 3.0980 -3.8816 -1.0966 43 1 1.3500 -4.2270 -1.1915 44 1 3.3164 -6.7492 -0.6828 45 1 0.6263 -2.0857 1.2822 46 1 2.2297 -1.9670 2.0697 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033132384.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:56 Heat of formation + Delta-G solvation = 138.107493 kcal Electronic energy + Delta-G solvation = -29598.296298 eV Core-core repulsion = 25685.091406 eV Total energy + Delta-G solvation = -3913.204892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.27330 -40.20758 -38.46837 -37.18166 -35.06986 -32.59036 -32.37272 -31.31545 -31.01315 -29.14434 -28.64865 -27.54117 -26.82349 -24.65292 -23.44693 -23.20473 -21.72091 -20.87994 -20.11971 -19.97591 -19.04313 -18.05235 -17.29029 -16.96404 -16.44039 -15.81119 -15.44383 -14.93359 -14.69077 -14.51459 -14.38081 -14.35028 -13.93538 -13.74678 -13.52636 -13.04876 -12.97702 -12.79797 -12.61430 -12.33655 -12.15722 -11.98136 -11.79350 -11.71343 -11.09372 -10.90644 -10.81479 -10.74046 -10.59284 -10.25879 -10.08465 -9.91954 -9.80352 -9.71012 -9.38431 -9.06358 -9.02388 -8.64146 -8.39689 -8.03906 -6.82299 -5.69029 -3.06416 0.75121 1.08504 1.98866 2.90052 2.92728 2.95738 3.20340 3.41354 3.46638 3.48730 3.75623 4.50692 4.53276 4.60039 4.68636 4.79920 4.83913 5.09761 5.10697 5.27082 5.32142 5.37174 5.43220 5.51628 5.57491 5.62542 5.68591 5.71102 5.76273 5.84827 5.88636 5.93628 6.15516 6.21494 6.24406 6.28658 6.38352 6.52010 6.59509 6.68965 6.71494 6.79481 7.00021 7.26615 7.45315 7.61183 7.66297 7.80359 7.83370 8.26676 8.39404 9.20523 9.81797 10.46909 11.39793 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015941 B = 0.002913 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.081230 B = 9611.420534 C =10793.060508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.592 5.592 3 C 0.555 3.445 4 O -0.528 6.528 5 C -0.127 4.127 6 C -0.100 4.100 7 C -0.138 4.138 8 C -0.095 4.095 9 C -0.127 4.127 10 C 0.058 3.942 11 C -0.221 4.221 12 C 0.138 3.862 13 N -0.316 5.316 14 N -0.483 5.483 15 H 0.436 0.564 16 C 0.073 3.927 17 C 0.125 3.875 18 H 0.108 0.892 19 C -0.151 4.151 20 C 0.172 3.828 21 N -0.601 5.601 22 C -0.230 4.230 23 H 0.078 0.922 24 C -0.007 4.007 25 N -0.918 5.918 26 Si 0.912 3.088 27 H -0.289 1.289 28 H -0.281 1.281 29 H -0.290 1.290 30 C 0.132 3.868 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.150 0.850 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.196 0.804 39 H 0.173 0.827 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.029 0.971 44 H 0.252 0.748 45 H 0.022 0.978 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.601 24.736 -3.790 26.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.323 5.323 3 C 0.345 3.655 4 O -0.406 6.406 5 C -0.130 4.130 6 C -0.118 4.118 7 C -0.156 4.156 8 C -0.113 4.113 9 C -0.145 4.145 10 C 0.056 3.944 11 C -0.233 4.233 12 C -0.049 4.049 13 N -0.138 5.138 14 N -0.188 5.188 15 H 0.279 0.721 16 C -0.076 4.076 17 C 0.022 3.978 18 H 0.126 0.874 19 C -0.190 4.190 20 C 0.047 3.953 21 N -0.327 5.327 22 C -0.358 4.358 23 H 0.096 0.904 24 C -0.204 4.204 25 N -0.565 5.565 26 Si 0.742 3.258 27 H -0.216 1.216 28 H -0.206 1.206 29 H -0.216 1.216 30 C 0.004 3.996 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.167 0.833 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.213 0.787 39 H 0.190 0.810 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.047 0.953 44 H 0.063 0.937 45 H 0.040 0.960 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.642 24.237 -4.004 25.205 hybrid contribution -0.876 -0.701 0.081 1.125 sum -6.518 23.536 -3.923 24.735 Atomic orbital electron populations 1.22487 0.80553 1.03685 1.01819 1.47721 1.06689 1.05975 1.71947 1.18294 0.87340 0.83389 0.76498 1.90716 1.13132 1.86229 1.50550 1.19939 0.95248 0.93476 1.04363 1.22119 0.93211 0.99262 0.97247 1.21118 1.00551 0.92495 1.01435 1.21234 0.94964 0.98395 0.96731 1.21150 0.94928 0.96907 1.01523 1.18039 0.90877 0.91393 0.94107 1.18800 0.94043 1.13337 0.97103 1.24322 0.88107 0.92416 1.00062 1.77340 1.23382 1.18394 0.94723 1.46183 1.07282 1.47346 1.17962 0.72110 1.22490 0.86490 1.00435 0.98231 1.22525 0.97510 0.80751 0.97024 0.87359 1.23187 1.00336 0.98597 0.96881 1.21229 1.01525 0.89014 0.83527 1.44386 1.82930 1.03270 1.02150 1.19038 1.38790 0.87411 0.90556 0.90416 1.24824 1.00842 0.98171 0.96532 1.69956 1.48937 1.25102 1.12530 0.86104 0.77712 0.82851 0.79118 1.21583 1.20622 1.21643 1.21800 0.96991 0.85921 0.94861 0.91905 0.89512 0.90795 0.83299 0.85601 0.85820 0.85637 0.78747 0.81004 0.92005 0.92284 0.91543 0.95260 0.93735 0.96025 0.94024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.65 7.47 59.84 0.45 1.10 16 2 N -0.59 -9.01 2.91 -172.57 -0.50 -9.52 16 3 C 0.55 8.63 7.35 -12.48 -0.09 8.54 16 4 O -0.53 -9.62 10.48 5.29 0.06 -9.56 16 5 C -0.13 -1.58 5.56 -104.70 -0.58 -2.16 16 6 C -0.10 -0.98 7.49 -39.22 -0.29 -1.27 16 7 C -0.14 -1.08 10.02 -39.60 -0.40 -1.48 16 8 C -0.09 -0.72 10.02 -39.56 -0.40 -1.11 16 9 C -0.13 -1.12 9.69 -39.30 -0.38 -1.50 16 10 C 0.06 0.68 5.78 -104.53 -0.60 0.07 16 11 C -0.22 -2.83 5.02 -105.36 -0.53 -3.36 16 12 C 0.14 2.09 9.05 -17.03 -0.15 1.94 16 13 N -0.32 -4.80 12.66 30.82 0.39 -4.41 16 14 N -0.48 -5.32 7.32 30.65 0.22 -5.09 16 15 H 0.44 3.23 8.96 -182.67 -1.64 1.59 16 16 C 0.07 0.74 11.87 -16.88 -0.20 0.54 16 17 C 0.13 2.36 3.47 -65.66 -0.23 2.13 16 18 H 0.11 2.31 7.02 -51.93 -0.36 1.94 16 19 C -0.15 -2.92 6.52 -24.90 -0.16 -3.08 16 20 C 0.17 4.22 5.47 -3.07 -0.02 4.21 16 21 N -0.60 -15.49 3.39 -169.93 -0.58 -16.07 16 22 C -0.23 -6.46 10.26 -15.06 -0.15 -6.61 16 23 H 0.08 2.11 7.84 -52.48 -0.41 1.70 16 24 C -0.01 -0.20 5.44 -17.43 -0.09 -0.30 16 25 N -0.92 -27.21 10.49 55.49 0.58 -26.63 16 26 Si 0.91 22.24 29.56 -169.99 -5.03 17.21 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 30 C 0.13 2.75 6.79 -2.41 -0.02 2.74 16 31 H 0.06 0.64 7.06 -51.93 -0.37 0.27 16 32 H 0.09 0.82 4.77 -51.93 -0.25 0.57 16 33 H 0.07 0.88 6.39 -51.92 -0.33 0.55 16 34 H 0.15 1.27 4.39 -52.49 -0.23 1.04 16 35 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.12 0.62 8.06 -52.48 -0.42 0.19 16 37 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.20 3.12 6.42 -52.49 -0.34 2.78 16 39 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.06 1.03 6.37 -51.93 -0.33 0.70 16 42 H 0.07 1.84 6.84 -51.92 -0.36 1.48 16 43 H 0.03 0.77 8.01 -51.93 -0.42 0.36 16 44 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.02 0.43 6.86 -51.93 -0.36 0.07 16 46 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 363.16 15.07 5.47 5.47 Total: -1.00 -34.79 363.16 -10.29 -45.08 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.06 Total: 3.12 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -3.85 Total: 0.40 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: 0.12 Total: -61.72 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.06 Total: -9.56 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.79 -10.29 -45.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033132384.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.191 kcal (2) G-P(sol) polarization free energy of solvation -34.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds