Wall clock time and date at job start Tue Mar 31 2020 22:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34773 * 120.00265 * 2 1 4 4 O 1.21589 * 120.00367 * 181.38874 * 3 2 1 5 5 C 1.47525 * 119.99913 * 1.38615 * 3 2 1 6 6 C 1.39596 * 120.21828 * 25.55601 * 5 3 2 7 7 C 1.37855 * 119.96871 * 180.02562 * 6 5 3 8 8 C 1.38574 * 120.41187 * 359.97438 * 7 6 5 9 9 C 1.37970 * 120.44905 * 0.02562 * 8 7 6 10 10 C 1.39248 * 120.01603 * 359.72183 * 9 8 7 11 11 C 1.48175 * 120.20450 * 180.27140 * 10 9 8 12 12 C 1.40978 * 126.25377 * 129.94129 * 11 10 9 13 13 N 1.30622 * 108.06929 * 179.87935 * 12 11 10 14 14 N 1.39996 * 108.57226 * 0.38862 * 13 12 11 15 15 H 0.97001 * 125.86659 * 179.71577 * 14 13 12 16 16 C 1.34699 * 108.26987 * 359.75285 * 14 13 12 17 17 C 1.46504 * 120.00174 * 179.97438 * 2 1 3 18 18 H 1.08994 * 110.88929 * 183.88139 * 17 2 1 19 19 C 1.55160 * 111.00319 * 59.99951 * 17 2 1 20 20 C 1.54321 * 102.94331 * 206.42826 * 19 17 2 21 21 N 1.47021 * 107.27423 * 22.18735 * 20 19 17 22 22 C 1.36933 * 125.65093 * 181.02261 * 21 20 19 23 23 H 1.08004 * 120.00122 * 186.28306 * 22 21 20 24 24 C 1.38810 * 120.00111 * 6.28422 * 22 21 20 25 25 N 1.31624 * 119.99765 * 8.42677 * 24 22 21 26 26 Si 1.86800 * 120.00066 * 188.14623 * 24 22 21 27 27 H 1.48500 * 109.47226 * 265.29666 * 26 24 22 28 28 H 1.48498 * 109.47196 * 25.29536 * 26 24 22 29 29 H 1.48502 * 109.46802 * 145.29759 * 26 24 22 30 30 C 1.47425 * 108.70028 * 1.29465 * 21 20 19 31 31 H 1.09000 * 109.47056 * 263.99916 * 1 2 3 32 32 H 1.08998 * 109.47553 * 24.00043 * 1 2 3 33 33 H 1.09007 * 109.47340 * 144.00350 * 1 2 3 34 34 H 1.07997 * 120.01689 * 0.02562 * 6 5 3 35 35 H 1.07996 * 119.79553 * 179.97438 * 7 6 5 36 36 H 1.08005 * 119.77316 * 180.02562 * 8 7 6 37 37 H 1.07997 * 119.99110 * 180.02562 * 9 8 7 38 38 H 1.08001 * 125.96581 * 0.02562 * 12 11 10 39 39 H 1.08001 * 126.19784 * 180.02562 * 16 14 13 40 40 H 1.08994 * 110.72159 * 88.05953 * 19 17 2 41 41 H 1.09007 * 110.87213 * 324.85690 * 19 17 2 42 42 H 1.09007 * 109.88178 * 262.77364 * 20 19 17 43 43 H 1.09004 * 110.01479 * 141.68515 * 20 19 17 44 44 H 0.96999 * 119.99964 * 179.72977 * 25 24 22 45 45 H 1.08994 * 110.36998 * 94.47613 * 30 21 20 46 46 H 1.09000 * 110.36737 * 216.80496 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3545 1.1673 -0.0255 5 6 1.4016 2.4446 0.0309 6 6 0.1190 2.5025 0.5790 7 6 -0.5655 3.6988 0.6048 8 6 0.0117 4.8485 0.0896 9 6 1.2783 4.8108 -0.4562 10 6 1.9883 3.6132 -0.4869 11 6 3.3512 3.5693 -1.0665 12 6 4.4965 3.0116 -0.4625 13 7 5.5017 3.1635 -1.2826 14 7 5.0460 3.8259 -2.4287 15 1 5.5859 4.0698 -3.1967 16 6 3.7290 4.0672 -2.2814 17 6 2.1975 -1.2687 0.0006 18 1 3.2717 -1.0973 0.0694 19 6 1.8484 -2.1131 -1.2535 20 6 2.1063 -3.5589 -0.7796 21 7 2.0265 -3.5578 0.6885 22 6 2.2161 -4.6453 1.4988 23 1 2.0365 -4.5652 2.5608 24 6 2.6392 -5.8505 0.9554 25 7 3.0170 -5.9079 -0.3041 26 14 2.6799 -7.3892 2.0138 27 1 4.0418 -7.5654 2.5789 28 1 1.6985 -7.2550 3.1202 29 1 2.3317 -8.5702 1.1836 30 6 1.7020 -2.1936 1.1433 31 1 -0.3633 -0.1074 1.0220 32 1 -0.3634 0.9388 -0.4180 33 1 -0.3634 -0.8315 -0.6040 34 1 -0.3367 1.6105 0.9827 35 1 -1.5577 3.7403 1.0291 36 1 -0.5337 5.7803 0.1154 37 1 1.7212 5.7113 -0.8552 38 1 4.5354 2.5389 0.5078 39 1 3.0878 4.5638 -2.9946 40 1 2.5042 -1.8571 -2.0856 41 1 0.8032 -1.9795 -1.5329 42 1 3.0980 -3.8816 -1.0966 43 1 1.3500 -4.2270 -1.1915 44 1 3.3164 -6.7492 -0.6828 45 1 0.6263 -2.0857 1.2822 46 1 2.2297 -1.9670 2.0697 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033132384.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:55 Heat of formation + Delta-G solvation = 115.399969 kcal Electronic energy + Delta-G solvation = -29599.280970 eV Core-core repulsion = 25685.091406 eV Total energy + Delta-G solvation = -3914.189564 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.21047 -41.28371 -39.54580 -38.60911 -36.46070 -34.25752 -33.30894 -32.33681 -32.07661 -30.93681 -29.50283 -29.06255 -27.98975 -26.51161 -24.53062 -23.95214 -22.76699 -22.10567 -21.92376 -21.07027 -20.19528 -18.95931 -18.91481 -18.33593 -17.59348 -16.76438 -16.60723 -16.44899 -15.97897 -15.84075 -15.62905 -15.32987 -15.14044 -14.80284 -14.50946 -14.35837 -14.21373 -14.01573 -13.82944 -13.76495 -13.64542 -13.33457 -12.89142 -12.81039 -12.74391 -12.47625 -12.33951 -12.08019 -12.04016 -11.85668 -11.81098 -11.56824 -11.43963 -10.97642 -10.76133 -10.27891 -10.02497 -9.77638 -9.63350 -8.94782 -8.88288 -7.85069 -5.25610 -0.02447 0.42134 1.11076 1.45549 1.47454 1.57061 1.83742 1.95450 2.05176 2.15605 2.49852 2.97981 3.30659 3.55543 3.65636 3.79604 3.89910 3.95179 4.03472 4.12152 4.17123 4.25844 4.30723 4.38967 4.52345 4.57947 4.60110 4.62555 4.64713 4.76082 4.78886 4.88440 4.96072 5.00648 5.04854 5.14979 5.19655 5.38155 5.46871 5.54009 5.55179 5.61954 5.66767 5.72278 5.77492 6.08822 6.17564 6.46911 6.53267 6.82913 7.05347 7.23819 7.72493 8.36867 9.22436 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015941 B = 0.002913 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.081230 B = 9611.420534 C =10793.060508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.593 5.593 3 C 0.547 3.453 4 O -0.565 6.565 5 C -0.150 4.150 6 C -0.103 4.103 7 C -0.131 4.131 8 C -0.084 4.084 9 C -0.124 4.124 10 C 0.042 3.958 11 C -0.242 4.242 12 C 0.118 3.882 13 N -0.360 5.360 14 N -0.473 5.473 15 H 0.451 0.549 16 C 0.093 3.907 17 C 0.143 3.857 18 H 0.075 0.925 19 C -0.132 4.132 20 C 0.182 3.818 21 N -0.623 5.623 22 C -0.245 4.245 23 H 0.084 0.916 24 C -0.065 4.065 25 N -0.949 5.949 26 Si 0.981 3.019 27 H -0.289 1.289 28 H -0.265 1.265 29 H -0.292 1.292 30 C 0.134 3.866 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.158 0.842 37 H 0.147 0.853 38 H 0.171 0.829 39 H 0.220 0.780 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.025 0.975 43 H 0.005 0.995 44 H 0.247 0.753 45 H 0.048 0.952 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.933 27.731 -3.807 30.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.324 5.324 3 C 0.339 3.661 4 O -0.446 6.446 5 C -0.154 4.154 6 C -0.121 4.121 7 C -0.149 4.149 8 C -0.102 4.102 9 C -0.142 4.142 10 C 0.039 3.961 11 C -0.254 4.254 12 C -0.067 4.067 13 N -0.184 5.184 14 N -0.181 5.181 15 H 0.297 0.703 16 C -0.057 4.057 17 C 0.038 3.962 18 H 0.093 0.907 19 C -0.171 4.171 20 C 0.056 3.944 21 N -0.349 5.349 22 C -0.374 4.374 23 H 0.102 0.898 24 C -0.259 4.259 25 N -0.598 5.598 26 Si 0.809 3.191 27 H -0.216 1.216 28 H -0.190 1.190 29 H -0.218 1.218 30 C 0.008 3.992 31 H 0.098 0.902 32 H 0.132 0.868 33 H 0.090 0.910 34 H 0.177 0.823 35 H 0.175 0.825 36 H 0.176 0.824 37 H 0.165 0.835 38 H 0.188 0.812 39 H 0.236 0.764 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.043 0.957 43 H 0.023 0.977 44 H 0.057 0.943 45 H 0.066 0.934 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -9.005 27.279 -4.005 29.005 hybrid contribution 0.144 -1.488 0.092 1.498 sum -8.862 25.790 -3.913 27.550 Atomic orbital electron populations 1.22794 0.77874 1.05104 1.03170 1.47688 1.08149 1.04378 1.72162 1.18978 0.87204 0.84444 0.75470 1.90726 1.14994 1.86835 1.52002 1.19777 0.96504 0.91901 1.07170 1.22245 0.92130 1.00783 0.96942 1.21507 1.01530 0.91611 1.00272 1.21678 0.94281 0.99674 0.94582 1.21397 0.95314 0.96335 1.01170 1.18169 0.90596 0.92303 0.95008 1.19055 0.94219 1.14004 0.98078 1.24116 0.89696 0.93246 0.99682 1.77216 1.24468 1.20257 0.96436 1.46184 1.08109 1.46395 1.17378 0.70341 1.23149 0.86110 0.98664 0.97799 1.21924 0.96215 0.82373 0.95678 0.90709 1.22983 1.02091 0.95051 0.96978 1.20942 0.98372 0.91727 0.83337 1.44668 1.82953 1.04738 1.02588 1.19453 1.38236 0.88472 0.91243 0.89840 1.25714 1.00997 1.01271 0.97878 1.70188 1.50028 1.25341 1.14233 0.85034 0.77756 0.78645 0.77709 1.21563 1.18959 1.21840 1.21907 0.98129 0.84099 0.95072 0.90185 0.86845 0.90999 0.82318 0.82513 0.82416 0.83538 0.81174 0.76359 0.91763 0.89456 0.95708 0.97730 0.94330 0.93410 0.94871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.05 7.47 127.77 0.95 2.01 16 2 N -0.59 -17.81 2.91 -818.17 -2.38 -20.19 16 3 C 0.55 17.25 7.35 86.69 0.64 17.89 16 4 O -0.57 -21.95 10.48 -3.99 -0.04 -21.99 16 5 C -0.15 -3.54 5.56 -19.91 -0.11 -3.65 16 6 C -0.10 -1.67 7.49 22.51 0.17 -1.50 16 7 C -0.13 -1.42 10.02 22.26 0.22 -1.20 16 8 C -0.08 -0.84 10.02 22.29 0.22 -0.61 16 9 C -0.12 -1.72 9.69 22.45 0.22 -1.50 16 10 C 0.04 0.90 5.78 -19.81 -0.11 0.78 16 11 C -0.24 -6.09 5.02 -20.34 -0.10 -6.19 16 12 C 0.12 3.83 9.05 85.54 0.77 4.60 16 13 N -0.36 -11.48 12.66 -56.39 -0.71 -12.19 16 14 N -0.47 -10.13 7.32 -56.95 -0.42 -10.55 16 15 H 0.45 6.21 8.96 -213.39 -1.91 4.29 16 16 C 0.09 1.70 11.87 83.87 1.00 2.70 16 17 C 0.14 5.54 3.47 46.46 0.16 5.70 16 18 H 0.07 3.41 7.02 -2.39 -0.02 3.39 16 19 C -0.13 -5.19 6.52 31.78 0.21 -4.98 16 20 C 0.18 9.33 5.47 86.73 0.47 9.80 16 21 N -0.62 -33.09 3.39 -691.54 -2.35 -35.44 16 22 C -0.25 -14.10 10.26 84.03 0.86 -13.24 16 23 H 0.08 4.57 7.84 -2.91 -0.02 4.55 16 24 C -0.07 -3.81 5.44 84.86 0.46 -3.35 16 25 N -0.95 -58.62 10.49 21.65 0.23 -58.39 16 26 Si 0.98 46.58 29.56 68.60 2.03 48.61 16 27 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 28 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 29 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 30 C 0.13 5.67 6.79 86.93 0.59 6.26 16 31 H 0.08 1.38 7.06 -2.39 -0.02 1.36 16 32 H 0.11 1.75 4.77 -2.39 -0.01 1.74 16 33 H 0.07 1.52 6.39 -2.38 -0.02 1.50 16 34 H 0.16 2.16 4.39 -2.91 -0.01 2.15 16 35 H 0.16 0.77 8.06 -2.91 -0.02 0.74 16 36 H 0.16 0.55 8.06 -2.91 -0.02 0.52 16 37 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.17 6.14 6.42 -2.91 -0.02 6.12 16 39 H 0.22 1.76 8.06 -2.91 -0.02 1.74 16 40 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.09 2.94 6.37 -2.38 -0.02 2.93 16 42 H 0.02 1.46 6.84 -2.38 -0.02 1.45 16 43 H 0.00 0.25 8.01 -2.39 -0.02 0.23 16 44 H 0.25 14.81 8.31 -92.71 -0.77 14.03 16 45 H 0.05 1.81 6.86 -2.39 -0.02 1.79 16 46 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -82.07 363.16 2.10 -79.97 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -0.88 Total: 16.65 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 6.62 Total: 13.51 kcal Atomic # 7 Polarization: -131.13 SS G_CDS: -5.63 Total: -136.76 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.04 Total: -21.99 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -82.07 2.10 -79.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033132384.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.373 kcal (2) G-P(sol) polarization free energy of solvation -82.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds