Wall clock time and date at job start Tue Mar 31 2020 23:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 5 5 C 1.34784 * 119.99893 * 274.99901 * 4 2 1 6 6 O 1.21283 * 119.99649 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99774 * 179.72962 * 5 4 2 8 8 C 1.52999 * 109.46969 * 299.99631 * 7 5 4 9 9 C 1.53003 * 109.47062 * 180.02562 * 8 7 5 10 10 C 1.53003 * 109.46813 * 60.00348 * 9 8 7 11 11 C 1.52999 * 109.47022 * 299.99677 * 10 9 8 12 12 C 1.53003 * 109.47062 * 60.00476 * 11 10 9 13 13 C 1.50705 * 109.47260 * 239.99668 * 2 1 3 14 14 O 1.20821 * 120.00186 * 240.00476 * 13 2 1 15 15 O 1.34234 * 119.99498 * 59.99849 * 13 2 1 16 16 C 1.45193 * 116.99570 * 179.97438 * 15 13 2 17 17 C 1.50708 * 109.47216 * 180.02562 * 16 15 13 18 18 O 1.21276 * 119.99455 * 359.97438 * 17 16 15 19 19 N 1.34769 * 120.00314 * 180.02562 * 17 16 15 20 20 C 1.46499 * 120.00142 * 179.97438 * 19 17 16 21 21 C 1.50697 * 109.47156 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00371 * 0.02562 * 21 20 19 23 23 C 1.37878 * 120.00193 * 179.97438 * 21 20 19 24 24 N 1.31514 * 119.99861 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00355 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46876 * 60.00469 * 25 23 21 27 27 H 1.48502 * 109.47283 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47245 * 300.00223 * 25 23 21 29 29 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 30 30 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 32 32 H 0.97005 * 120.00261 * 95.00113 * 4 2 1 33 33 H 1.08993 * 109.47525 * 59.99679 * 7 5 4 34 34 H 1.09001 * 109.47339 * 300.00351 * 8 7 5 35 35 H 1.08996 * 109.47277 * 60.00292 * 8 7 5 36 36 H 1.08993 * 109.47243 * 299.99933 * 9 8 7 37 37 H 1.09001 * 109.46902 * 179.97438 * 9 8 7 38 38 H 1.09003 * 109.46769 * 179.97438 * 10 9 8 39 39 H 1.08993 * 109.47555 * 59.99776 * 10 9 8 40 40 H 1.09001 * 109.47339 * 300.00413 * 11 10 9 41 41 H 1.09006 * 109.47230 * 180.02562 * 11 10 9 42 42 H 1.09001 * 109.46902 * 180.02562 * 12 11 10 43 43 H 1.08993 * 109.47243 * 60.00067 * 12 11 10 44 44 H 1.09006 * 109.47525 * 300.00198 * 16 15 13 45 45 H 1.09000 * 109.47370 * 60.00947 * 16 15 13 46 46 H 0.97002 * 119.99938 * 359.97438 * 19 17 16 47 47 H 1.08997 * 109.46924 * 299.99978 * 20 19 17 48 48 H 1.08996 * 109.47027 * 60.00022 * 20 19 17 49 49 H 0.97000 * 120.00794 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.1469 -0.0183 2.3572 6 8 1.8581 1.1584 2.4117 7 6 2.6434 -0.7302 3.5891 8 6 1.6938 -1.8800 3.9312 9 6 2.1974 -2.6025 5.1823 10 6 2.2496 -1.6187 6.3530 11 6 3.1993 -0.4689 6.0109 12 6 2.6956 0.2535 4.7598 13 6 2.0324 -0.7105 -1.2304 14 8 2.7269 -1.6929 -1.1196 15 8 1.7080 -0.2519 -2.4496 16 6 2.2276 -0.9858 -3.5896 17 6 1.7636 -0.3287 -4.8640 18 8 1.0635 0.6604 -4.8160 19 7 2.1258 -0.8408 -6.0568 20 6 1.6742 -0.2023 -7.2956 21 6 2.2136 -0.9639 -8.4788 22 1 2.8307 -1.8365 -8.3236 23 6 1.9184 -0.5474 -9.7596 24 7 1.1666 0.5149 -9.9487 25 14 2.5877 -1.4910 -11.2263 26 1 2.0936 -2.8907 -11.1816 27 1 2.1298 -0.8439 -12.4821 28 1 4.0719 -1.4882 -11.1813 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.2490 -1.6319 1.1526 33 1 3.6414 -1.1266 3.4024 34 1 0.6957 -1.4836 4.1179 35 1 1.6562 -2.5806 3.0970 36 1 3.1955 -2.9988 4.9959 37 1 1.5206 -3.4213 5.4262 38 1 2.6081 -2.1335 7.2444 39 1 1.2516 -1.2224 6.5393 40 1 4.1975 -0.8653 5.8245 41 1 3.2369 0.2317 6.8451 42 1 3.3725 1.0724 4.5159 43 1 1.6976 0.6499 4.9461 44 1 3.3172 -0.9847 -3.5565 45 1 1.8642 -2.0129 -3.5569 46 1 2.6854 -1.6321 -6.0951 47 1 0.5847 -0.2032 -7.3286 48 1 2.0379 0.8246 -7.3286 49 1 0.9591 0.8083 -10.8497 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050073921.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:39 Heat of formation + Delta-G solvation = -188.880664 kcal Electronic energy + Delta-G solvation = -28919.588764 eV Core-core repulsion = 24652.602931 eV Total energy + Delta-G solvation = -4266.985833 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.17976 -40.34436 -38.84683 -38.06305 -36.68085 -35.42634 -34.30026 -32.46265 -32.31360 -31.19504 -30.56020 -29.18147 -26.80836 -25.30474 -23.94151 -23.02737 -22.60027 -21.23247 -20.69671 -20.15730 -20.01137 -18.40897 -17.74405 -17.20579 -16.93130 -16.54325 -16.06474 -15.63355 -15.51186 -15.24240 -15.02368 -14.78547 -14.59230 -14.54641 -14.22505 -14.05142 -13.61970 -13.22507 -13.10382 -12.83708 -12.79018 -12.70149 -12.58681 -12.44264 -12.03022 -11.94661 -11.82484 -11.74723 -11.60095 -11.11074 -11.06320 -10.95021 -10.91238 -10.82979 -10.73495 -10.58379 -10.37454 -10.06091 -9.61226 -9.48955 -9.24397 -8.81138 -8.03686 -6.22119 -4.30009 1.84460 1.96814 2.27345 2.87944 3.10928 3.22232 3.27350 3.28637 3.81463 4.09944 4.18277 4.24310 4.29104 4.46195 4.63236 4.68298 4.72901 4.73868 4.81323 4.91574 4.98130 5.01194 5.03810 5.12364 5.13373 5.14894 5.26442 5.34865 5.38444 5.44918 5.54494 5.58606 5.64103 5.70028 5.76611 5.84122 5.86267 5.91870 6.00003 6.12808 7.05353 7.17866 7.24434 7.39761 7.42069 7.57512 7.81498 7.88798 8.44634 8.66800 8.91023 9.36448 10.87886 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.036652 B = 0.001545 C = 0.001515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.750000 B =18115.858314 C =18477.347507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.154 3.846 3 H 0.129 0.871 4 N -0.718 5.718 5 C 0.523 3.477 6 O -0.533 6.533 7 C -0.104 4.104 8 C -0.112 4.112 9 C -0.118 4.118 10 C -0.123 4.123 11 C -0.120 4.120 12 C -0.100 4.100 13 C 0.461 3.539 14 O -0.508 6.508 15 O -0.320 6.320 16 C 0.048 3.952 17 C 0.499 3.501 18 O -0.532 6.532 19 N -0.706 5.706 20 C 0.251 3.749 21 C -0.547 4.547 22 H 0.064 0.936 23 C 0.065 3.935 24 N -0.884 5.884 25 Si 0.906 3.094 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.275 1.275 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.410 0.590 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.393 0.607 47 H 0.030 0.970 48 H 0.030 0.970 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.900 -7.129 31.603 32.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.048 3.952 3 H 0.147 0.853 4 N -0.374 5.374 5 C 0.310 3.690 6 O -0.409 6.409 7 C -0.125 4.125 8 C -0.150 4.150 9 C -0.156 4.156 10 C -0.160 4.160 11 C -0.158 4.158 12 C -0.137 4.137 13 C 0.303 3.697 14 O -0.397 6.397 15 O -0.234 6.234 16 C -0.029 4.029 17 C 0.282 3.718 18 O -0.410 6.410 19 N -0.356 5.356 20 C 0.131 3.869 21 C -0.586 4.586 22 H 0.082 0.918 23 C -0.139 4.139 24 N -0.521 5.521 25 Si 0.733 3.267 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.200 1.200 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.247 0.753 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.226 0.774 47 H 0.048 0.952 48 H 0.048 0.952 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.294 -5.711 31.465 32.061 hybrid contribution 0.906 -1.510 -1.131 2.093 sum 3.200 -7.221 30.334 31.346 Atomic orbital electron populations 1.22140 0.91354 1.03432 1.04832 1.20328 0.96583 0.97899 0.80391 0.85318 1.45907 1.68130 1.14875 1.08445 1.20756 0.76952 0.87183 0.84121 1.90729 1.49268 1.15934 1.84972 1.21363 1.01186 0.97207 0.92739 1.21552 0.98842 0.95993 0.98577 1.21528 1.01656 0.97895 0.94479 1.21573 1.00105 0.96487 0.97846 1.21564 0.99129 0.97511 0.97566 1.21360 1.02885 0.96888 0.92613 1.23675 0.77524 0.82963 0.85553 1.90657 1.35780 1.25976 1.87254 1.86551 1.68575 1.54452 1.13775 1.22943 1.00475 0.96176 0.83320 1.19845 0.82138 0.85345 0.84494 1.90721 1.37534 1.25610 1.87097 1.46367 1.51787 1.31233 1.06190 1.19183 0.95898 0.93747 0.78054 1.21164 1.33520 1.13316 0.90565 0.91816 1.24948 0.94807 0.95071 0.99088 1.69957 1.36015 1.23589 1.22557 0.86444 0.79280 0.79816 0.81189 1.20036 1.21016 1.20039 0.89329 0.91748 0.90356 0.75322 0.88247 0.91161 0.91328 0.91638 0.91525 0.91912 0.91838 0.91870 0.91575 0.91113 0.91036 0.88350 0.88317 0.77426 0.95204 0.95210 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.42 37.16 0.35 -1.13 16 2 C 0.15 1.59 3.09 -69.08 -0.21 1.38 16 3 H 0.13 1.41 7.58 -51.93 -0.39 1.01 16 4 N -0.72 -6.31 4.84 -54.93 -0.27 -6.57 16 5 C 0.52 4.91 7.12 -10.98 -0.08 4.84 16 6 O -0.53 -6.85 15.64 5.56 0.09 -6.76 16 7 C -0.10 -0.68 2.53 -91.77 -0.23 -0.91 16 8 C -0.11 -0.58 5.10 -26.73 -0.14 -0.71 16 9 C -0.12 -0.51 5.92 -26.73 -0.16 -0.67 16 10 C -0.12 -0.56 5.92 -26.73 -0.16 -0.71 16 11 C -0.12 -0.61 5.92 -26.73 -0.16 -0.76 16 12 C -0.10 -0.68 4.49 -26.73 -0.12 -0.80 16 13 C 0.46 5.69 7.32 36.01 0.26 5.95 16 14 O -0.51 -6.71 15.59 -18.75 -0.29 -7.00 16 15 O -0.32 -4.70 9.66 -45.91 -0.44 -5.14 16 16 C 0.05 0.69 5.94 36.01 0.21 0.90 16 17 C 0.50 9.66 7.91 -10.98 -0.09 9.57 16 18 O -0.53 -12.68 16.50 -14.10 -0.23 -12.91 16 19 N -0.71 -14.18 5.55 -61.48 -0.34 -14.52 16 20 C 0.25 6.47 5.43 -5.20 -0.03 6.44 16 21 C -0.55 -14.47 9.28 -34.44 -0.32 -14.79 16 22 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 23 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 24 N -0.88 -25.58 13.29 55.43 0.74 -24.84 16 25 Si 0.91 20.45 29.54 -169.99 -5.02 15.43 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 29 H 0.09 0.88 8.11 -51.93 -0.42 0.46 16 30 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.41 3.09 7.22 -40.82 -0.29 2.79 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.31 7.57 -51.93 -0.39 -0.08 16 36 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 43 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 44 H 0.10 1.22 8.13 -51.93 -0.42 0.79 16 45 H 0.10 1.19 8.13 -51.93 -0.42 0.77 16 46 H 0.39 6.58 8.32 -40.82 -0.34 6.24 16 47 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 48 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 407.65 15.07 6.14 6.14 Total: -1.00 -33.68 407.65 -8.72 -42.41 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -8.14 Total: 3.51 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -0.96 Total: 10.27 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.13 Total: -45.93 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.88 Total: -31.82 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.68 -8.72 -42.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050073921.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.474 kcal (2) G-P(sol) polarization free energy of solvation -33.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds