Wall clock time and date at job start Tue Mar 31 2020 23:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 5 5 C 1.34784 * 119.99893 * 274.99901 * 4 2 1 6 6 O 1.21283 * 119.99649 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99774 * 179.72962 * 5 4 2 8 8 C 1.52999 * 109.46969 * 299.99631 * 7 5 4 9 9 C 1.53003 * 109.47062 * 180.02562 * 8 7 5 10 10 C 1.53003 * 109.46813 * 60.00348 * 9 8 7 11 11 C 1.52999 * 109.47022 * 299.99677 * 10 9 8 12 12 C 1.53003 * 109.47062 * 60.00476 * 11 10 9 13 13 C 1.50705 * 109.47260 * 239.99668 * 2 1 3 14 14 O 1.20821 * 120.00186 * 240.00476 * 13 2 1 15 15 O 1.34234 * 119.99498 * 59.99849 * 13 2 1 16 16 C 1.45193 * 116.99570 * 179.97438 * 15 13 2 17 17 C 1.50708 * 109.47216 * 180.02562 * 16 15 13 18 18 O 1.21276 * 119.99455 * 359.97438 * 17 16 15 19 19 N 1.34769 * 120.00314 * 180.02562 * 17 16 15 20 20 C 1.46499 * 120.00142 * 179.97438 * 19 17 16 21 21 C 1.50697 * 109.47156 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00371 * 0.02562 * 21 20 19 23 23 C 1.37878 * 120.00193 * 179.97438 * 21 20 19 24 24 N 1.31514 * 119.99861 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00355 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46876 * 60.00469 * 25 23 21 27 27 H 1.48502 * 109.47283 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47245 * 300.00223 * 25 23 21 29 29 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 30 30 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 32 32 H 0.97005 * 120.00261 * 95.00113 * 4 2 1 33 33 H 1.08993 * 109.47525 * 59.99679 * 7 5 4 34 34 H 1.09001 * 109.47339 * 300.00351 * 8 7 5 35 35 H 1.08996 * 109.47277 * 60.00292 * 8 7 5 36 36 H 1.08993 * 109.47243 * 299.99933 * 9 8 7 37 37 H 1.09001 * 109.46902 * 179.97438 * 9 8 7 38 38 H 1.09003 * 109.46769 * 179.97438 * 10 9 8 39 39 H 1.08993 * 109.47555 * 59.99776 * 10 9 8 40 40 H 1.09001 * 109.47339 * 300.00413 * 11 10 9 41 41 H 1.09006 * 109.47230 * 180.02562 * 11 10 9 42 42 H 1.09001 * 109.46902 * 180.02562 * 12 11 10 43 43 H 1.08993 * 109.47243 * 60.00067 * 12 11 10 44 44 H 1.09006 * 109.47525 * 300.00198 * 16 15 13 45 45 H 1.09000 * 109.47370 * 60.00947 * 16 15 13 46 46 H 0.97002 * 119.99938 * 359.97438 * 19 17 16 47 47 H 1.08997 * 109.46924 * 299.99978 * 20 19 17 48 48 H 1.08996 * 109.47027 * 60.00022 * 20 19 17 49 49 H 0.97000 * 120.00794 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.1469 -0.0183 2.3572 6 8 1.8581 1.1584 2.4117 7 6 2.6434 -0.7302 3.5891 8 6 1.6938 -1.8800 3.9312 9 6 2.1974 -2.6025 5.1823 10 6 2.2496 -1.6187 6.3530 11 6 3.1993 -0.4689 6.0109 12 6 2.6956 0.2535 4.7598 13 6 2.0324 -0.7105 -1.2304 14 8 2.7269 -1.6929 -1.1196 15 8 1.7080 -0.2519 -2.4496 16 6 2.2276 -0.9858 -3.5896 17 6 1.7636 -0.3287 -4.8640 18 8 1.0635 0.6604 -4.8160 19 7 2.1258 -0.8408 -6.0568 20 6 1.6742 -0.2023 -7.2956 21 6 2.2136 -0.9639 -8.4788 22 1 2.8307 -1.8365 -8.3236 23 6 1.9184 -0.5474 -9.7596 24 7 1.1666 0.5149 -9.9487 25 14 2.5877 -1.4910 -11.2263 26 1 2.0936 -2.8907 -11.1816 27 1 2.1298 -0.8439 -12.4821 28 1 4.0719 -1.4882 -11.1813 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.2490 -1.6319 1.1526 33 1 3.6414 -1.1266 3.4024 34 1 0.6957 -1.4836 4.1179 35 1 1.6562 -2.5806 3.0970 36 1 3.1955 -2.9988 4.9959 37 1 1.5206 -3.4213 5.4262 38 1 2.6081 -2.1335 7.2444 39 1 1.2516 -1.2224 6.5393 40 1 4.1975 -0.8653 5.8245 41 1 3.2369 0.2317 6.8451 42 1 3.3725 1.0724 4.5159 43 1 1.6976 0.6499 4.9461 44 1 3.3172 -0.9847 -3.5565 45 1 1.8642 -2.0129 -3.5569 46 1 2.6854 -1.6321 -6.0951 47 1 0.5847 -0.2032 -7.3286 48 1 2.0379 0.8246 -7.3286 49 1 0.9591 0.8083 -10.8497 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050073921.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:38 Heat of formation + Delta-G solvation = -211.100843 kcal Electronic energy + Delta-G solvation = -28920.552303 eV Core-core repulsion = 24652.602931 eV Total energy + Delta-G solvation = -4267.949373 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.14746 -41.19628 -40.39083 -38.65457 -37.78340 -36.29456 -36.19102 -34.42209 -32.98490 -31.63759 -31.29360 -30.59159 -28.54495 -26.17905 -24.84803 -24.29522 -23.43750 -22.08707 -21.66513 -21.47244 -20.65072 -19.44487 -19.04799 -18.41785 -17.99285 -17.70554 -17.28498 -16.98935 -16.67159 -16.36073 -16.23067 -16.03994 -15.53436 -15.09776 -14.99877 -14.93248 -14.66848 -14.56899 -14.19171 -14.03731 -13.84714 -13.68192 -13.44053 -13.37735 -13.24884 -13.07514 -12.96064 -12.76190 -12.68321 -12.24297 -12.22843 -12.02369 -11.98289 -11.73990 -11.56190 -11.52505 -11.34202 -11.00295 -10.94072 -10.80652 -10.75693 -10.40607 -9.93633 -8.29377 -6.46253 0.85036 0.94509 1.44704 1.48007 1.52169 1.54635 1.56443 2.03732 2.34117 2.53016 3.05914 3.34223 3.55431 3.69095 3.74449 3.78445 3.86591 3.93413 4.02128 4.04485 4.23931 4.28720 4.33031 4.47007 4.55642 4.60230 4.61537 4.68478 4.72652 4.98711 5.01419 5.09094 5.10605 5.13551 5.16851 5.20484 5.21778 5.26422 5.27641 5.37999 5.41216 5.41990 5.57700 5.62324 5.81949 6.32702 6.38590 6.62550 6.77071 7.08373 7.20435 7.35544 8.82374 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.036652 B = 0.001545 C = 0.001515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.750000 B =18115.858314 C =18477.347507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.157 3.843 3 H 0.121 0.879 4 N -0.709 5.709 5 C 0.522 3.478 6 O -0.572 6.572 7 C -0.098 4.098 8 C -0.109 4.109 9 C -0.116 4.116 10 C -0.123 4.123 11 C -0.116 4.116 12 C -0.099 4.099 13 C 0.469 3.531 14 O -0.512 6.512 15 O -0.340 6.340 16 C 0.060 3.940 17 C 0.498 3.502 18 O -0.583 6.583 19 N -0.698 5.698 20 C 0.266 3.734 21 C -0.559 4.559 22 H 0.087 0.913 23 C 0.005 3.995 24 N -0.930 5.930 25 Si 0.985 3.015 26 H -0.262 1.262 27 H -0.287 1.287 28 H -0.263 1.263 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.419 0.581 33 H 0.116 0.884 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.126 0.874 45 H 0.130 0.870 46 H 0.413 0.587 47 H -0.007 1.007 48 H -0.008 1.008 49 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.488 -10.178 32.524 34.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.050 3.950 3 H 0.138 0.862 4 N -0.364 5.364 5 C 0.311 3.689 6 O -0.451 6.451 7 C -0.119 4.119 8 C -0.147 4.147 9 C -0.153 4.153 10 C -0.160 4.160 11 C -0.153 4.153 12 C -0.137 4.137 13 C 0.311 3.689 14 O -0.401 6.401 15 O -0.254 6.254 16 C -0.016 4.016 17 C 0.284 3.716 18 O -0.464 6.464 19 N -0.349 5.349 20 C 0.144 3.856 21 C -0.596 4.596 22 H 0.105 0.895 23 C -0.195 4.195 24 N -0.568 5.568 25 Si 0.808 3.192 26 H -0.186 1.186 27 H -0.212 1.212 28 H -0.187 1.187 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.257 0.743 33 H 0.134 0.866 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.144 0.856 45 H 0.148 0.852 46 H 0.249 0.751 47 H 0.011 0.989 48 H 0.010 0.990 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.919 -8.831 32.426 33.834 hybrid contribution 0.391 -0.509 -1.343 1.488 sum 4.310 -9.340 31.083 32.741 Atomic orbital electron populations 1.22082 0.90550 1.04122 1.04359 1.20292 0.97156 0.97416 0.80136 0.86168 1.45852 1.67675 1.15150 1.07751 1.21315 0.76053 0.86768 0.84793 1.90716 1.51050 1.17753 1.85542 1.21400 1.02236 0.97255 0.90962 1.21556 0.97978 0.95555 0.99571 1.21528 1.02278 0.97821 0.93672 1.21583 0.99649 0.96350 0.98455 1.21540 0.99594 0.97642 0.96569 1.21332 1.01720 0.96865 0.93766 1.23874 0.77148 0.82815 0.85051 1.90652 1.36010 1.26234 1.87167 1.86544 1.69162 1.55167 1.14566 1.22821 1.01826 0.96389 0.80581 1.20702 0.80663 0.84462 0.85785 1.90700 1.39715 1.28009 1.87967 1.46027 1.52099 1.31727 1.05082 1.18625 0.93607 0.92535 0.80863 1.21588 1.33474 1.13831 0.90743 0.89527 1.26043 0.94855 0.95904 1.02649 1.70124 1.37690 1.25646 1.23356 0.85206 0.78955 0.78497 0.76554 1.18624 1.21240 1.18722 0.90244 0.90457 0.90366 0.74277 0.86566 0.92016 0.90210 0.90804 0.90740 0.90932 0.92422 0.91032 0.91412 0.92546 0.92588 0.85587 0.85181 0.75072 0.98905 0.99032 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.42 71.98 0.68 -2.07 16 2 C 0.16 3.11 3.09 44.25 0.14 3.24 16 3 H 0.12 2.65 7.58 -2.39 -0.02 2.63 16 4 N -0.71 -11.50 4.84 -446.10 -2.16 -13.66 16 5 C 0.52 9.48 7.12 87.65 0.62 10.11 16 6 O -0.57 -14.94 15.64 -3.04 -0.05 -14.99 16 7 C -0.10 -1.14 2.53 -11.54 -0.03 -1.17 16 8 C -0.11 -0.92 5.10 30.60 0.16 -0.77 16 9 C -0.12 -0.73 5.92 30.60 0.18 -0.55 16 10 C -0.12 -0.90 5.92 30.60 0.18 -0.72 16 11 C -0.12 -1.02 5.92 30.60 0.18 -0.84 16 12 C -0.10 -1.31 4.49 30.60 0.14 -1.17 16 13 C 0.47 10.78 7.32 71.24 0.52 11.31 16 14 O -0.51 -12.14 15.59 21.98 0.34 -11.80 16 15 O -0.34 -9.57 9.66 -45.10 -0.44 -10.01 16 16 C 0.06 1.59 5.94 71.24 0.42 2.02 16 17 C 0.50 19.20 7.91 87.66 0.69 19.90 16 18 O -0.58 -28.70 16.50 15.78 0.26 -28.44 16 19 N -0.70 -27.87 5.55 -466.81 -2.59 -30.46 16 20 C 0.27 14.15 5.43 85.63 0.46 14.61 16 21 C -0.56 -29.44 9.28 25.60 0.24 -29.21 16 22 H 0.09 4.06 7.60 -2.91 -0.02 4.04 16 23 C 0.01 0.29 5.46 84.65 0.46 0.76 16 24 N -0.93 -55.13 13.29 21.45 0.28 -54.85 16 25 Si 0.98 41.34 29.54 68.60 2.03 43.36 16 26 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 27 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 28 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 29 H 0.08 1.59 8.11 -2.39 -0.02 1.57 16 30 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.42 5.38 7.22 -92.70 -0.67 4.71 16 33 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.08 0.51 7.57 -2.39 -0.02 0.49 16 36 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 42 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 43 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 44 H 0.13 2.70 8.13 -2.38 -0.02 2.68 16 45 H 0.13 2.69 8.13 -2.39 -0.02 2.67 16 46 H 0.41 13.06 8.32 -92.71 -0.77 12.29 16 47 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 48 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 49 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -75.49 407.65 2.25 -73.24 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -0.48 Total: 22.16 kcal Atomic # 6 Polarization: 20.39 SS G_CDS: 5.05 Total: 25.44 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -4.47 Total: -98.97 kcal Atomic # 8 Polarization: -65.36 SS G_CDS: 0.12 Total: -65.24 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.36 kcal Total: -75.49 2.25 -73.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050073921.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.858 kcal (2) G-P(sol) polarization free energy of solvation -75.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds