Wall clock time and date at job start Wed Apr 1 2020 00:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47405 * 2 1 4 4 C 1.46494 * 120.00078 * 269.99930 * 3 2 1 5 5 C 1.50697 * 109.47350 * 269.99748 * 4 3 2 6 6 H 1.08006 * 120.00073 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00502 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99419 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00278 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47335 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47156 * 119.99919 * 9 7 5 12 12 H 1.48503 * 109.47287 * 240.00047 * 9 7 5 13 13 C 1.34782 * 119.99827 * 89.99662 * 3 2 1 14 14 O 1.21278 * 120.00069 * 179.97438 * 13 3 2 15 15 C 1.50703 * 120.00031 * 0.02562 * 13 3 2 16 16 O 1.45199 * 109.47111 * 179.97438 * 15 13 3 17 17 C 1.34230 * 116.99723 * 179.97438 * 16 15 13 18 18 O 1.20819 * 120.00075 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.99554 * 180.02562 * 17 16 15 20 20 N 1.46500 * 109.47163 * 180.02562 * 19 17 16 21 21 C 1.47196 * 119.78556 * 270.00019 * 20 19 17 22 22 C 1.52982 * 108.66360 * 108.04035 * 21 20 19 23 23 C 1.51776 * 110.88512 * 86.47127 * 22 21 20 24 24 C 1.51797 * 113.80884 * 292.99518 * 23 22 21 25 25 C 1.53059 * 110.74154 * 66.80523 * 24 23 22 26 26 C 1.33371 * 119.78951 * 89.99920 * 20 19 17 27 27 O 1.21273 * 119.88937 * 0.55603 * 26 20 19 28 28 H 1.08999 * 109.46623 * 60.00071 * 1 2 3 29 29 H 1.09002 * 109.46951 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46948 * 299.99710 * 1 2 3 31 31 H 1.09004 * 109.47105 * 239.99915 * 2 1 3 32 32 H 1.09003 * 109.47068 * 120.00083 * 2 1 3 33 33 H 1.09001 * 109.46948 * 29.99846 * 4 3 2 34 34 H 1.09000 * 109.47391 * 150.00015 * 4 3 2 35 35 H 0.97002 * 120.00079 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.47227 * 59.99558 * 15 13 3 37 37 H 1.09002 * 109.46803 * 300.00042 * 15 13 3 38 38 H 1.08997 * 109.47495 * 60.00276 * 19 17 16 39 39 H 1.09000 * 109.47199 * 300.00124 * 19 17 16 40 40 H 1.09000 * 109.60617 * 348.28608 * 21 20 19 41 41 H 1.08995 * 109.60580 * 227.79508 * 21 20 19 42 42 H 1.09000 * 109.19832 * 326.10366 * 22 21 20 43 43 H 1.09005 * 109.15447 * 206.80667 * 22 21 20 44 44 H 1.08997 * 108.61568 * 171.87622 * 23 22 21 45 45 H 1.08996 * 108.61753 * 54.11401 * 23 22 21 46 46 H 1.09004 * 109.21915 * 306.48090 * 24 23 22 47 47 H 1.08994 * 109.22330 * 187.13540 * 24 23 22 48 48 H 1.09003 * 109.63386 * 155.38914 * 25 24 23 49 49 H 1.08999 * 109.79996 * 34.88481 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3428 1.2301 -1.0961 7 6 4.1493 2.3895 -2.8779 8 7 3.3493 3.1256 -3.6180 9 14 5.9137 2.0966 -3.4167 10 1 6.6013 1.2414 -2.4161 11 1 5.9217 1.4169 -4.7371 12 1 6.6206 3.3980 -3.5255 13 6 2.2430 2.0165 1.1673 14 8 2.6478 3.1598 1.1673 15 6 1.9923 1.3059 2.4724 16 8 2.3072 2.1953 3.5760 17 6 2.1361 1.7115 4.8164 18 8 1.7369 0.5823 4.9746 19 6 2.4420 2.5771 6.0115 20 7 2.1766 1.8247 7.2401 21 6 0.8395 1.8745 7.8536 22 6 0.1494 0.5269 7.6338 23 6 0.5169 -0.4546 8.7315 24 6 1.9763 -0.8721 8.7169 25 6 2.8824 0.3123 9.0620 26 6 3.1479 1.0989 7.7956 27 8 4.2488 1.0728 7.2875 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5818 1.6876 -2.0283 34 1 2.0957 3.1410 -1.1384 35 1 3.6753 3.5161 -4.4439 36 1 2.6227 0.4186 2.5299 37 1 0.9444 1.0114 2.5302 38 1 1.8125 3.4666 5.9866 39 1 3.4907 2.8733 5.9867 40 1 0.2526 2.6662 7.3879 41 1 0.9343 2.0668 8.9223 42 1 0.4573 0.1195 6.6708 43 1 -0.9306 0.6743 7.6316 44 1 -0.1010 -1.3459 8.6226 45 1 0.2956 0.0028 9.6958 46 1 2.2334 -1.2436 7.7249 47 1 2.1298 -1.6662 9.4475 48 1 3.8246 -0.0540 9.4698 49 1 2.3905 0.9524 9.7944 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060696295.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:01 Heat of formation + Delta-G solvation = -179.405659 kcal Electronic energy + Delta-G solvation = -30497.484017 eV Core-core repulsion = 26230.909051 eV Total energy + Delta-G solvation = -4266.574966 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.11836 -41.22678 -40.44071 -37.89818 -37.54045 -37.00273 -35.70854 -34.96516 -32.04899 -31.81190 -31.15571 -29.99084 -28.35501 -26.89623 -25.06290 -24.80061 -24.18168 -22.52067 -21.46659 -20.36872 -19.86311 -19.16844 -18.68182 -18.46442 -18.28850 -17.72197 -17.53935 -17.41796 -16.77000 -16.26343 -16.13544 -15.81304 -15.21369 -15.03390 -14.84268 -14.69189 -14.58644 -14.45402 -14.39359 -14.09538 -13.77319 -13.67847 -13.58209 -13.31409 -13.18997 -13.12005 -13.06621 -12.71944 -12.54190 -12.44792 -12.26044 -12.09229 -11.93590 -11.83000 -11.74400 -11.71981 -11.45928 -11.40465 -10.86698 -10.77507 -10.67174 -9.97737 -9.57835 -8.25904 -6.40093 0.97186 1.05135 1.34557 1.37179 1.48406 1.57861 1.64957 1.92286 2.32552 2.45030 3.04173 3.38693 3.44612 3.55808 3.86930 3.87770 3.91064 3.92700 3.95469 4.10438 4.12513 4.25232 4.34417 4.34476 4.46139 4.54762 4.55173 4.60260 4.82726 4.84852 4.88161 4.91496 4.99790 5.00508 5.10865 5.15276 5.19972 5.27449 5.32384 5.33178 5.36997 5.51362 5.59170 5.77068 6.01740 6.25956 6.49599 6.61500 6.68937 7.04972 7.17939 7.33754 8.81751 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018421 B = 0.002365 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.621328 B =11837.780251 C =12470.981327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.545 4.545 6 H 0.051 0.949 7 C 0.010 3.990 8 N -0.926 5.926 9 Si 0.967 3.033 10 H -0.270 1.270 11 H -0.267 1.267 12 H -0.281 1.281 13 C 0.499 3.501 14 O -0.576 6.576 15 C 0.065 3.935 16 O -0.349 6.349 17 C 0.443 3.557 18 O -0.516 6.516 19 C 0.120 3.880 20 N -0.590 5.590 21 C 0.104 3.896 22 C -0.154 4.154 23 C -0.116 4.116 24 C -0.111 4.111 25 C -0.127 4.127 26 C 0.510 3.490 27 O -0.600 6.600 28 H 0.046 0.954 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.031 0.969 34 H 0.001 0.999 35 H 0.268 0.732 36 H 0.106 0.894 37 H 0.124 0.876 38 H 0.165 0.835 39 H 0.118 0.882 40 H 0.107 0.893 41 H 0.113 0.887 42 H 0.056 0.944 43 H 0.091 0.909 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.033 0.967 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.545 -7.737 28.843 32.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.142 3.858 5 C -0.584 4.584 6 H 0.069 0.931 7 C -0.189 4.189 8 N -0.565 5.565 9 Si 0.791 3.209 10 H -0.195 1.195 11 H -0.192 1.192 12 H -0.207 1.207 13 C 0.286 3.714 14 O -0.456 6.456 15 C -0.012 4.012 16 O -0.264 6.264 17 C 0.285 3.715 18 O -0.404 6.404 19 C -0.005 4.005 20 N -0.321 5.321 21 C -0.016 4.016 22 C -0.193 4.193 23 C -0.153 4.153 24 C -0.149 4.149 25 C -0.166 4.166 26 C 0.301 3.699 27 O -0.481 6.481 28 H 0.065 0.935 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.049 0.951 34 H 0.020 0.980 35 H 0.077 0.923 36 H 0.124 0.876 37 H 0.142 0.858 38 H 0.182 0.818 39 H 0.136 0.864 40 H 0.125 0.875 41 H 0.131 0.869 42 H 0.075 0.925 43 H 0.109 0.891 44 H 0.084 0.916 45 H 0.108 0.892 46 H 0.052 0.948 47 H 0.112 0.888 48 H 0.113 0.887 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.937 -7.423 28.426 31.349 hybrid contribution 1.058 -0.111 -1.313 1.690 sum -9.879 -7.534 27.112 29.823 Atomic orbital electron populations 1.22161 0.94021 1.03802 1.01954 1.21856 0.95781 0.81012 1.04181 1.48212 1.63602 1.15212 1.05731 1.18803 0.95540 0.91749 0.79718 1.21716 0.97870 1.32192 1.06619 0.93075 1.25819 1.02327 0.94419 0.96370 1.70042 1.37622 1.34036 1.14814 0.85383 0.79062 0.78044 0.78403 1.19461 1.19193 1.20654 1.20528 0.78358 0.86663 0.85812 1.90675 1.47008 1.20155 1.87738 1.22755 1.04461 0.91837 0.82110 1.86569 1.79059 1.45586 1.15183 1.25090 0.73685 0.87930 0.84746 1.90593 1.42986 1.20417 1.86421 1.21154 1.06760 0.93684 0.78898 1.47804 1.13804 1.47471 1.23063 1.22315 0.79961 0.98868 1.00439 1.21945 1.01542 0.95649 1.00115 1.21134 0.94681 0.99690 0.99817 1.21226 0.95244 0.96961 1.01491 1.22033 1.03292 0.97736 0.93565 1.21483 0.83084 0.78033 0.87345 1.90723 1.26089 1.64761 1.66535 0.93498 0.88415 0.92323 0.90041 0.88878 0.95066 0.98047 0.92282 0.87584 0.85815 0.81812 0.86423 0.87458 0.86890 0.92528 0.89052 0.91615 0.89158 0.94816 0.88825 0.88672 0.85580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 10.24 71.98 0.74 -3.24 16 2 C 0.09 2.91 5.93 86.38 0.51 3.42 16 3 N -0.60 -25.75 2.46 -826.16 -2.03 -27.78 16 4 C 0.26 14.28 5.16 85.63 0.44 14.72 16 5 C -0.55 -31.95 9.39 25.60 0.24 -31.71 16 6 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 7 C 0.01 0.58 5.46 84.66 0.46 1.04 16 8 N -0.93 -56.19 13.29 21.45 0.28 -55.90 16 9 Si 0.97 45.76 29.54 68.60 2.03 47.79 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 C 0.50 21.90 7.75 87.66 0.68 22.58 16 14 O -0.58 -31.35 16.08 15.78 0.25 -31.10 16 15 C 0.07 2.13 4.50 71.24 0.32 2.45 16 16 O -0.35 -11.65 9.76 -45.07 -0.44 -12.09 16 17 C 0.44 12.20 8.02 71.24 0.57 12.77 16 18 O -0.52 -15.35 13.97 21.98 0.31 -15.04 16 19 C 0.12 2.36 5.98 85.63 0.51 2.88 16 20 N -0.59 -10.07 1.97 -825.51 -1.62 -11.70 16 21 C 0.10 0.86 5.91 86.24 0.51 1.37 16 22 C -0.15 -1.64 5.73 30.19 0.17 -1.47 16 23 C -0.12 -0.94 5.27 29.80 0.16 -0.78 16 24 C -0.11 -1.35 5.67 30.22 0.17 -1.17 16 25 C -0.13 -1.60 5.56 30.10 0.17 -1.43 16 26 C 0.51 11.18 6.79 88.11 0.60 11.78 16 27 O -0.60 -19.69 16.59 -3.01 -0.05 -19.74 16 28 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 1.34 7.22 -2.39 -0.02 1.33 16 31 H 0.08 2.63 8.07 -2.39 -0.02 2.62 16 32 H 0.09 2.35 6.44 -2.39 -0.02 2.34 16 33 H 0.03 1.70 8.07 -2.39 -0.02 1.68 16 34 H 0.00 0.09 7.42 -2.39 -0.02 0.07 16 35 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 36 H 0.11 3.21 7.39 -2.39 -0.02 3.19 16 37 H 0.12 3.26 7.18 -2.39 -0.02 3.24 16 38 H 0.16 1.85 7.85 -2.39 -0.02 1.83 16 39 H 0.12 2.67 7.37 -2.39 -0.02 2.65 16 40 H 0.11 0.49 7.77 -2.39 -0.02 0.48 16 41 H 0.11 0.27 6.71 -2.39 -0.02 0.26 16 42 H 0.06 1.08 5.71 -2.39 -0.01 1.07 16 43 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 44 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.09 0.26 7.89 -2.39 -0.02 0.24 16 46 H 0.03 0.66 7.86 -2.38 -0.02 0.64 16 47 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.09 1.26 8.13 -2.39 -0.02 1.24 16 49 H 0.13 0.67 6.79 -2.39 -0.02 0.65 16 Total: -1.00 -87.91 397.05 5.93 -81.97 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 0.95 Total: 10.39 kcal Atomic # 6 Polarization: 26.95 SS G_CDS: 6.25 Total: 33.20 kcal Atomic # 7 Polarization: -92.02 SS G_CDS: -3.37 Total: -95.38 kcal Atomic # 8 Polarization: -78.04 SS G_CDS: 0.07 Total: -77.97 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -87.91 5.93 -81.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060696295.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.432 kcal (2) G-P(sol) polarization free energy of solvation -87.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds