Wall clock time and date at job start Tue Mar 31 2020 23:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34229 * 117.00195 * 2 1 4 4 O 1.20822 * 119.99938 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99976 * 180.02562 * 3 2 1 6 6 C 1.53004 * 110.30067 * 304.65262 * 5 3 2 7 7 C 1.53985 * 110.57618 * 182.55222 * 5 3 2 8 8 N 1.48144 * 104.81620 * 217.41855 * 7 5 3 9 9 C 1.34774 * 127.83673 * 219.54048 * 8 7 5 10 10 O 1.21346 * 119.99991 * 359.69559 * 9 8 7 11 11 C 1.49455 * 120.00290 * 179.70534 * 9 8 7 12 12 O 1.21356 * 119.99706 * 359.97438 * 11 9 8 13 13 N 1.34774 * 120.00291 * 179.97438 * 11 9 8 14 14 C 1.46500 * 119.99683 * 179.72317 * 13 11 9 15 15 C 1.53004 * 109.47082 * 180.27461 * 14 13 11 16 16 C 1.52998 * 109.47293 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46849 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00196 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99779 * 180.02562 * 17 16 15 20 20 N 1.31508 * 119.99844 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99979 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47068 * 59.99555 * 21 19 17 23 23 H 1.48497 * 109.47190 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46813 * 299.99760 * 21 19 17 25 25 C 1.48148 * 104.32621 * 39.27418 * 8 7 5 26 26 C 1.54284 * 110.34588 * 66.82415 * 5 3 2 27 27 H 1.09000 * 110.34015 * 237.85094 * 26 5 3 28 28 C 1.53001 * 110.34124 * 0.10879 * 26 5 3 29 29 H 1.09006 * 109.47026 * 59.99570 * 1 2 3 30 30 H 1.09000 * 109.47299 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47120 * 300.00422 * 1 2 3 32 32 H 1.09005 * 109.46743 * 182.17937 * 6 5 3 33 33 H 1.09002 * 109.47023 * 302.17076 * 6 5 3 34 34 H 1.08997 * 109.47748 * 62.17563 * 6 5 3 35 35 H 1.09000 * 110.35219 * 98.54407 * 7 5 3 36 36 H 1.09001 * 110.26991 * 336.24168 * 7 5 3 37 37 H 0.96993 * 120.00082 * 359.97438 * 13 11 9 38 38 H 1.08992 * 109.47341 * 300.27316 * 14 13 11 39 39 H 1.08996 * 109.47008 * 60.27918 * 14 13 11 40 40 H 1.08998 * 109.47171 * 300.00477 * 15 14 13 41 41 H 1.09002 * 109.46651 * 59.99667 * 15 14 13 42 42 H 1.09000 * 109.46660 * 299.99888 * 16 15 14 43 43 H 1.08996 * 109.46858 * 60.00419 * 16 15 14 44 44 H 0.97000 * 119.99853 * 180.02562 * 20 19 17 45 45 H 1.08997 * 110.40226 * 79.45673 * 25 8 7 46 46 H 1.08998 * 110.40835 * 201.77493 * 25 8 7 47 47 H 1.08995 * 109.47031 * 170.59209 * 28 26 5 48 48 H 1.09005 * 109.47017 * 290.58908 * 28 26 5 49 49 H 1.08996 * 109.47560 * 50.58718 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.1397 0.4875 1.1795 7 6 4.0315 2.7413 0.0637 8 7 5.2279 2.7978 -0.8081 9 6 6.3707 3.4815 -0.6004 10 8 6.5005 4.1569 0.3993 11 6 7.4780 3.4079 -1.6015 12 8 7.3483 2.7322 -2.6011 13 7 8.6206 4.0920 -1.3940 14 6 9.7083 4.0150 -2.3724 15 6 10.8834 4.8719 -1.8971 16 6 12.0196 4.7910 -2.9185 17 6 13.1772 5.6345 -2.4500 18 1 13.1091 6.1747 -1.5172 19 6 14.3228 5.7176 -3.2127 20 7 14.4055 5.0603 -4.3487 21 14 15.7574 6.7638 -2.6323 22 1 16.2362 6.2625 -1.3190 23 1 16.8603 6.6852 -3.6236 24 1 15.3163 8.1749 -2.4927 25 6 4.8858 1.9272 -1.9569 26 6 4.1313 0.7346 -1.3308 27 1 4.8172 -0.0916 -1.1434 28 6 2.9928 0.2846 -2.2484 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 5.2253 0.5854 1.1885 33 1 3.7318 0.8804 2.1108 34 1 3.8705 -0.5640 1.0799 35 1 4.2935 3.0114 1.0867 36 1 3.2524 3.4016 -0.3170 37 1 8.7241 4.6323 -0.5952 38 1 10.0320 2.9793 -2.4750 39 1 9.3567 4.3830 -3.3362 40 1 10.5596 5.9076 -1.7944 41 1 11.2348 4.5039 -0.9331 42 1 12.3432 3.7552 -3.0206 43 1 11.6683 5.1588 -3.8825 44 1 15.2116 5.1184 -4.8851 45 1 4.2421 2.4584 -2.6579 46 1 5.7916 1.5855 -2.4578 47 1 3.3902 0.0640 -3.2391 48 1 2.5263 -0.6104 -1.8366 49 1 2.2507 1.0794 -2.3234 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343160702.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:26 Heat of formation + Delta-G solvation = -158.416864 kcal Electronic energy + Delta-G solvation = -29801.178979 eV Core-core repulsion = 25535.514155 eV Total energy + Delta-G solvation = -4265.664824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.78738 -40.57799 -39.03627 -38.00219 -36.90364 -35.69960 -33.84784 -33.26560 -32.08740 -31.26675 -28.44713 -27.84427 -27.04495 -26.73560 -24.73646 -23.67238 -22.48649 -21.94454 -20.81739 -20.02667 -19.70858 -18.10029 -17.58436 -17.20843 -16.91472 -16.81720 -16.38965 -16.08487 -15.71590 -15.22595 -14.92084 -14.56344 -14.44606 -14.33865 -14.17899 -13.77230 -13.64205 -13.36727 -13.33859 -13.05343 -12.92307 -12.62905 -12.49282 -12.31493 -12.17300 -11.92981 -11.84050 -11.79302 -11.53427 -11.30474 -11.19762 -11.08823 -10.89956 -10.77604 -10.71815 -10.63313 -9.91451 -9.72883 -9.36350 -9.19085 -9.14621 -8.99691 -8.38448 -6.03393 -4.06483 1.36210 1.69780 1.92786 2.34212 3.15933 3.32168 3.36613 3.37141 3.39965 3.80305 3.89087 4.13042 4.36409 4.41576 4.44761 4.57608 4.63160 4.71051 4.73190 4.86840 5.03649 5.11322 5.14957 5.23085 5.28672 5.32559 5.34063 5.41143 5.56554 5.57230 5.59906 5.64383 5.66910 5.70567 5.78023 5.93112 6.05740 6.27662 6.52204 6.69066 6.92921 6.94181 7.22988 7.24578 7.60285 7.64574 7.72043 7.94612 8.01257 8.35966 8.99700 9.57876 11.07778 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.035913 B = 0.001722 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.464993 B =16252.989490 C =16631.909510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.351 6.351 3 C 0.485 3.515 4 O -0.504 6.504 5 C -0.070 4.070 6 C -0.137 4.137 7 C 0.118 3.882 8 N -0.597 5.597 9 C 0.530 3.470 10 O -0.518 6.518 11 C 0.506 3.494 12 O -0.522 6.522 13 N -0.690 5.690 14 C 0.114 3.886 15 C -0.123 4.123 16 C 0.025 3.975 17 C -0.524 4.524 18 H 0.056 0.944 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.089 3.911 26 C -0.092 4.092 27 H 0.101 0.899 28 C -0.156 4.156 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.411 0.589 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.262 0.738 45 H 0.078 0.922 46 H 0.124 0.876 47 H 0.072 0.928 48 H 0.076 0.924 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.052 -13.429 8.566 33.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.267 6.267 3 C 0.328 3.672 4 O -0.391 6.391 5 C -0.072 4.072 6 C -0.194 4.194 7 C -0.004 4.004 8 N -0.331 5.331 9 C 0.314 3.686 10 O -0.393 6.393 11 C 0.286 3.714 12 O -0.399 6.399 13 N -0.341 5.341 14 C -0.008 4.008 15 C -0.161 4.161 16 C -0.013 4.013 17 C -0.562 4.562 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.722 3.278 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.033 4.033 26 C -0.111 4.111 27 H 0.119 0.881 28 C -0.213 4.213 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.247 0.753 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.071 0.929 45 H 0.096 0.904 46 H 0.142 0.858 47 H 0.090 0.910 48 H 0.095 0.905 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -29.042 -13.198 8.242 32.948 hybrid contribution 0.546 0.901 0.621 1.223 sum -28.496 -12.297 8.863 32.277 Atomic orbital electron populations 1.23313 0.76220 1.03875 1.02700 1.86545 1.23374 1.32916 1.83913 1.23109 0.91053 0.81531 0.71536 1.90687 1.66816 1.36295 1.45293 1.21481 0.87680 0.98443 0.99605 1.21887 1.02035 1.00244 0.95256 1.22321 0.87238 0.93515 0.97351 1.48573 1.13994 1.46915 1.23634 1.19985 0.82049 0.79803 0.86765 1.90776 1.80068 1.39685 1.28812 1.19840 0.83692 0.81464 0.86416 1.90655 1.80482 1.40193 1.28556 1.46078 1.14661 1.47192 1.26177 1.21857 0.85848 1.01824 0.91225 1.21936 0.94765 0.98081 1.01341 1.19025 0.91181 0.97636 0.93438 1.21168 0.99549 1.28965 1.06568 0.92616 1.25020 0.98656 0.95784 0.94932 1.69949 1.28262 1.42094 1.12960 0.86630 0.81904 0.80860 0.78434 1.20233 1.21272 1.20227 1.23081 1.02357 0.89465 0.88370 1.22287 0.97936 0.98816 0.92110 0.88060 1.22072 0.97121 1.02015 1.00125 0.91761 0.87900 0.91825 0.90588 0.91668 0.90577 0.88528 0.88604 0.75262 0.91019 0.91023 0.92404 0.92410 0.96188 0.96188 0.92865 0.90367 0.85820 0.90950 0.90477 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.56 101.05 1.07 1.22 16 2 O -0.35 -2.39 8.52 -39.26 -0.33 -2.72 16 3 C 0.49 4.09 4.67 36.00 0.17 4.26 16 4 O -0.50 -5.54 15.18 -18.75 -0.28 -5.83 16 5 C -0.07 -0.54 0.97 -154.47 -0.15 -0.69 16 6 C -0.14 -0.87 8.09 37.16 0.30 -0.57 16 7 C 0.12 1.15 5.95 -2.62 -0.02 1.13 16 8 N -0.60 -6.68 3.32 -170.06 -0.56 -7.24 16 9 C 0.53 7.23 7.98 -11.58 -0.09 7.14 16 10 O -0.52 -8.00 16.75 5.50 0.09 -7.91 16 11 C 0.51 7.43 7.87 -11.58 -0.09 7.34 16 12 O -0.52 -8.30 13.77 5.49 0.08 -8.22 16 13 N -0.69 -10.16 5.55 -60.73 -0.34 -10.49 16 14 C 0.11 1.91 5.67 -4.04 -0.02 1.89 16 15 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 16 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 17 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 18 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 21 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.09 0.83 6.16 -2.41 -0.01 0.82 16 26 C -0.09 -0.65 3.31 -89.22 -0.30 -0.95 16 27 H 0.10 0.63 7.71 -51.93 -0.40 0.23 16 28 C -0.16 -0.94 7.84 37.16 0.29 -0.65 16 29 H 0.06 0.30 8.13 -51.93 -0.42 -0.12 16 30 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.30 8.13 -51.93 -0.42 -0.12 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.40 8.13 -51.93 -0.42 -0.02 16 35 H 0.10 0.96 7.58 -51.93 -0.39 0.56 16 36 H 0.10 1.00 6.86 -51.93 -0.36 0.64 16 37 H 0.41 5.58 7.94 -40.82 -0.32 5.26 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 45 H 0.08 0.70 7.86 -51.93 -0.41 0.29 16 46 H 0.12 1.32 5.48 -51.93 -0.28 1.04 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.08 0.43 6.69 -51.93 -0.35 0.08 16 49 H 0.05 0.38 7.02 -51.93 -0.36 0.01 16 LS Contribution 400.14 15.07 6.03 6.03 Total: -1.00 -32.86 400.14 -7.07 -39.92 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -7.92 Total: 0.22 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 0.46 Total: 5.61 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: -0.17 Total: -43.49 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.45 Total: -24.68 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.86 -7.07 -39.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343160702.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.494 kcal (2) G-P(sol) polarization free energy of solvation -32.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds