Wall clock time and date at job start Tue Mar 31 2020 23:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34229 * 117.00195 * 2 1 4 4 O 1.20822 * 119.99938 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99976 * 180.02562 * 3 2 1 6 6 C 1.53004 * 110.30067 * 304.65262 * 5 3 2 7 7 C 1.53985 * 110.57618 * 182.55222 * 5 3 2 8 8 N 1.48144 * 104.81620 * 217.41855 * 7 5 3 9 9 C 1.34774 * 127.83673 * 219.54048 * 8 7 5 10 10 O 1.21346 * 119.99991 * 359.69559 * 9 8 7 11 11 C 1.49455 * 120.00290 * 179.70534 * 9 8 7 12 12 O 1.21356 * 119.99706 * 359.97438 * 11 9 8 13 13 N 1.34774 * 120.00291 * 179.97438 * 11 9 8 14 14 C 1.46500 * 119.99683 * 179.72317 * 13 11 9 15 15 C 1.53004 * 109.47082 * 180.27461 * 14 13 11 16 16 C 1.52998 * 109.47293 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46849 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00196 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99779 * 180.02562 * 17 16 15 20 20 N 1.31508 * 119.99844 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99979 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47068 * 59.99555 * 21 19 17 23 23 H 1.48497 * 109.47190 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46813 * 299.99760 * 21 19 17 25 25 C 1.48148 * 104.32621 * 39.27418 * 8 7 5 26 26 C 1.54284 * 110.34588 * 66.82415 * 5 3 2 27 27 H 1.09000 * 110.34015 * 237.85094 * 26 5 3 28 28 C 1.53001 * 110.34124 * 0.10879 * 26 5 3 29 29 H 1.09006 * 109.47026 * 59.99570 * 1 2 3 30 30 H 1.09000 * 109.47299 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47120 * 300.00422 * 1 2 3 32 32 H 1.09005 * 109.46743 * 182.17937 * 6 5 3 33 33 H 1.09002 * 109.47023 * 302.17076 * 6 5 3 34 34 H 1.08997 * 109.47748 * 62.17563 * 6 5 3 35 35 H 1.09000 * 110.35219 * 98.54407 * 7 5 3 36 36 H 1.09001 * 110.26991 * 336.24168 * 7 5 3 37 37 H 0.96993 * 120.00082 * 359.97438 * 13 11 9 38 38 H 1.08992 * 109.47341 * 300.27316 * 14 13 11 39 39 H 1.08996 * 109.47008 * 60.27918 * 14 13 11 40 40 H 1.08998 * 109.47171 * 300.00477 * 15 14 13 41 41 H 1.09002 * 109.46651 * 59.99667 * 15 14 13 42 42 H 1.09000 * 109.46660 * 299.99888 * 16 15 14 43 43 H 1.08996 * 109.46858 * 60.00419 * 16 15 14 44 44 H 0.97000 * 119.99853 * 180.02562 * 20 19 17 45 45 H 1.08997 * 110.40226 * 79.45673 * 25 8 7 46 46 H 1.08998 * 110.40835 * 201.77493 * 25 8 7 47 47 H 1.08995 * 109.47031 * 170.59209 * 28 26 5 48 48 H 1.09005 * 109.47017 * 290.58908 * 28 26 5 49 49 H 1.08996 * 109.47560 * 50.58718 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.1397 0.4875 1.1795 7 6 4.0315 2.7413 0.0637 8 7 5.2279 2.7978 -0.8081 9 6 6.3707 3.4815 -0.6004 10 8 6.5005 4.1569 0.3993 11 6 7.4780 3.4079 -1.6015 12 8 7.3483 2.7322 -2.6011 13 7 8.6206 4.0920 -1.3940 14 6 9.7083 4.0150 -2.3724 15 6 10.8834 4.8719 -1.8971 16 6 12.0196 4.7910 -2.9185 17 6 13.1772 5.6345 -2.4500 18 1 13.1091 6.1747 -1.5172 19 6 14.3228 5.7176 -3.2127 20 7 14.4055 5.0603 -4.3487 21 14 15.7574 6.7638 -2.6323 22 1 16.2362 6.2625 -1.3190 23 1 16.8603 6.6852 -3.6236 24 1 15.3163 8.1749 -2.4927 25 6 4.8858 1.9272 -1.9569 26 6 4.1313 0.7346 -1.3308 27 1 4.8172 -0.0916 -1.1434 28 6 2.9928 0.2846 -2.2484 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 5.2253 0.5854 1.1885 33 1 3.7318 0.8804 2.1108 34 1 3.8705 -0.5640 1.0799 35 1 4.2935 3.0114 1.0867 36 1 3.2524 3.4016 -0.3170 37 1 8.7241 4.6323 -0.5952 38 1 10.0320 2.9793 -2.4750 39 1 9.3567 4.3830 -3.3362 40 1 10.5596 5.9076 -1.7944 41 1 11.2348 4.5039 -0.9331 42 1 12.3432 3.7552 -3.0206 43 1 11.6683 5.1588 -3.8825 44 1 15.2116 5.1184 -4.8851 45 1 4.2421 2.4584 -2.6579 46 1 5.7916 1.5855 -2.4578 47 1 3.3902 0.0640 -3.2391 48 1 2.5263 -0.6104 -1.8366 49 1 2.2507 1.0794 -2.3234 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343160702.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:26 Heat of formation + Delta-G solvation = -179.560904 kcal Electronic energy + Delta-G solvation = -29802.095853 eV Core-core repulsion = 25535.514155 eV Total energy + Delta-G solvation = -4266.581698 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.52354 -41.58240 -39.98245 -38.99311 -37.55602 -37.13103 -35.32104 -34.51801 -33.04232 -32.69476 -29.29900 -28.75167 -28.18305 -27.56823 -25.88818 -24.81559 -23.55579 -22.83324 -22.36995 -21.03009 -20.56599 -19.12775 -18.48306 -18.25124 -18.14671 -17.73374 -17.48607 -17.09593 -16.86702 -16.45425 -16.27114 -15.91232 -15.58399 -15.26587 -14.80535 -14.73707 -14.65167 -14.26067 -14.18372 -13.92589 -13.77890 -13.71142 -13.53415 -13.50855 -13.31539 -12.95083 -12.76852 -12.72596 -12.66546 -12.52541 -12.45343 -12.38933 -11.87106 -11.82529 -11.68806 -11.66686 -11.53621 -11.38596 -11.23176 -10.61219 -10.53265 -10.33048 -10.06944 -8.18527 -6.29322 0.23119 0.99169 1.05089 1.42788 1.45128 1.53002 1.65494 2.03058 2.34215 2.43913 3.04652 3.15353 3.20523 3.32602 3.55741 3.81825 3.92211 4.08526 4.09622 4.19378 4.28926 4.32122 4.35351 4.40998 4.45558 4.53493 4.56484 4.66438 4.74056 4.76650 4.79233 4.83969 4.91194 4.92675 4.99851 5.07105 5.15918 5.16769 5.24392 5.27180 5.36199 5.52425 5.71989 5.85347 5.91267 6.11966 6.24623 6.54057 6.62157 6.84309 6.87337 7.39903 8.92967 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.035913 B = 0.001722 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.464993 B =16252.989490 C =16631.909510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.348 6.348 3 C 0.491 3.509 4 O -0.534 6.534 5 C -0.066 4.066 6 C -0.134 4.134 7 C 0.117 3.883 8 N -0.592 5.592 9 C 0.533 3.467 10 O -0.540 6.540 11 C 0.508 3.492 12 O -0.534 6.534 13 N -0.685 5.685 14 C 0.129 3.871 15 C -0.107 4.107 16 C 0.025 3.975 17 C -0.545 4.545 18 H 0.063 0.937 19 C 0.000 4.000 20 N -0.932 5.932 21 Si 0.964 3.036 22 H -0.267 1.267 23 H -0.285 1.285 24 H -0.268 1.268 25 C 0.086 3.914 26 C -0.084 4.084 27 H 0.116 0.884 28 C -0.151 4.151 29 H 0.062 0.938 30 H 0.133 0.867 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.419 0.581 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.067 0.933 42 H -0.002 1.002 43 H -0.003 1.003 44 H 0.263 0.737 45 H 0.082 0.918 46 H 0.113 0.887 47 H 0.081 0.919 48 H 0.087 0.913 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.899 -14.237 9.684 34.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.263 6.263 3 C 0.335 3.665 4 O -0.424 6.424 5 C -0.068 4.068 6 C -0.191 4.191 7 C -0.005 4.005 8 N -0.325 5.325 9 C 0.316 3.684 10 O -0.418 6.418 11 C 0.288 3.712 12 O -0.412 6.412 13 N -0.337 5.337 14 C 0.006 3.994 15 C -0.145 4.145 16 C -0.012 4.012 17 C -0.583 4.583 18 H 0.082 0.918 19 C -0.198 4.198 20 N -0.572 5.572 21 Si 0.789 3.211 22 H -0.192 1.192 23 H -0.210 1.210 24 H -0.193 1.193 25 C -0.035 4.035 26 C -0.103 4.103 27 H 0.134 0.866 28 C -0.208 4.208 29 H 0.080 0.920 30 H 0.151 0.849 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.256 0.744 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.016 0.984 43 H 0.015 0.985 44 H 0.072 0.928 45 H 0.100 0.900 46 H 0.131 0.869 47 H 0.100 0.900 48 H 0.106 0.894 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -29.929 -14.035 9.371 34.359 hybrid contribution 0.699 1.093 0.234 1.318 sum -29.230 -12.942 9.605 33.379 Atomic orbital electron populations 1.23583 0.74813 1.05832 1.02514 1.86534 1.24700 1.31750 1.83350 1.23142 0.91124 0.81571 0.70695 1.90680 1.67461 1.37365 1.46863 1.21440 0.87592 0.97122 1.00649 1.21893 1.01627 1.00957 0.94644 1.22379 0.86247 0.95104 0.96797 1.48625 1.13530 1.45982 1.24316 1.19668 0.82407 0.80124 0.86197 1.90766 1.80608 1.40927 1.29486 1.20028 0.83767 0.80930 0.86426 1.90659 1.80776 1.40649 1.29154 1.45886 1.14299 1.47517 1.26036 1.21488 0.85633 1.00967 0.91278 1.21649 0.93726 0.99185 0.99922 1.18926 0.92648 0.95693 0.93978 1.21660 1.00540 1.29188 1.06878 0.91849 1.25958 1.01742 0.97087 0.95005 1.70084 1.29150 1.43673 1.14256 0.85514 0.78195 0.79253 0.78154 1.19190 1.21033 1.19271 1.23196 1.02200 0.90090 0.88032 1.22287 0.98280 0.98081 0.91701 0.86617 1.22049 0.96399 1.01953 1.00448 0.91957 0.84882 0.92093 0.90998 0.91384 0.88925 0.88782 0.89327 0.74413 0.91380 0.91627 0.91607 0.91449 0.98375 0.98500 0.92801 0.89964 0.86908 0.90022 0.89439 0.93871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 113.37 1.20 1.38 16 2 O -0.35 -4.01 8.52 -51.41 -0.44 -4.45 16 3 C 0.49 7.65 4.67 71.23 0.33 7.99 16 4 O -0.53 -11.49 15.18 21.98 0.33 -11.15 16 5 C -0.07 -0.93 0.97 -52.16 -0.05 -0.98 16 6 C -0.13 -1.46 8.09 71.98 0.58 -0.87 16 7 C 0.12 2.21 5.95 86.40 0.51 2.73 16 8 N -0.59 -12.92 3.32 -810.32 -2.69 -15.61 16 9 C 0.53 14.30 7.98 87.27 0.70 15.00 16 10 O -0.54 -16.49 16.75 -3.23 -0.05 -16.55 16 11 C 0.51 14.68 7.87 87.27 0.69 15.37 16 12 O -0.53 -16.81 13.77 -3.27 -0.04 -16.85 16 13 N -0.69 -19.76 5.55 -464.41 -2.58 -22.33 16 14 C 0.13 4.29 5.67 86.38 0.49 4.78 16 15 C -0.11 -4.06 5.27 30.60 0.16 -3.90 16 16 C 0.03 1.28 4.97 29.85 0.15 1.43 16 17 C -0.54 -30.22 9.11 25.60 0.23 -29.99 16 18 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 19 C 0.00 0.00 5.46 84.66 0.46 0.47 16 20 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 21 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 25 C 0.09 1.54 6.16 86.53 0.53 2.07 16 26 C -0.08 -1.05 3.31 -9.89 -0.03 -1.09 16 27 H 0.12 1.17 7.71 -2.39 -0.02 1.15 16 28 C -0.15 -1.54 7.84 71.98 0.56 -0.97 16 29 H 0.06 0.49 8.13 -2.38 -0.02 0.47 16 30 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.06 0.49 8.13 -2.39 -0.02 0.47 16 32 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.09 0.72 8.13 -2.39 -0.02 0.70 16 35 H 0.09 1.84 7.58 -2.39 -0.02 1.82 16 36 H 0.09 1.84 6.86 -2.39 -0.02 1.83 16 37 H 0.42 10.98 7.94 -92.71 -0.74 10.25 16 38 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 44 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 45 H 0.08 1.41 7.86 -2.39 -0.02 1.39 16 46 H 0.11 2.33 5.48 -2.39 -0.01 2.32 16 47 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.09 0.74 6.69 -2.38 -0.02 0.72 16 49 H 0.04 0.54 7.02 -2.39 -0.02 0.53 16 Total: -1.00 -70.52 400.14 3.58 -66.94 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.22 Total: 16.61 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 6.52 Total: 13.41 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -4.98 Total: -93.69 kcal Atomic # 8 Polarization: -48.79 SS G_CDS: -0.20 Total: -48.99 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -70.52 3.58 -66.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343160702.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.617 kcal (2) G-P(sol) polarization free energy of solvation -70.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds