Wall clock time and date at job start Tue Mar 31 2020 22:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.04675 * 2 1 4 4 O 1.43898 * 109.90504 * 238.82550 * 2 1 3 5 5 C 1.44431 * 106.99444 * 214.26114 * 4 2 1 6 6 C 1.55108 * 103.55031 * 39.73892 * 5 4 2 7 7 C 1.53566 * 109.90981 * 121.17847 * 2 1 3 8 8 C 1.52655 * 110.37801 * 3.19801 * 7 2 1 9 9 N 1.47264 * 108.44625 * 287.60919 * 8 7 2 10 10 C 1.34776 * 121.04496 * 130.49127 * 9 8 7 11 11 O 1.21353 * 119.99538 * 6.27828 * 10 9 8 12 12 C 1.49448 * 120.00641 * 186.27249 * 10 9 8 13 13 O 1.21353 * 119.99700 * 6.39298 * 12 10 9 14 14 N 1.34770 * 120.00442 * 186.39719 * 12 10 9 15 15 C 1.46497 * 120.00281 * 179.97438 * 14 12 10 16 16 C 1.53008 * 109.47186 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.47034 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.47102 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00050 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99812 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00044 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99701 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47167 * 90.00153 * 22 20 18 24 24 H 1.48498 * 109.47350 * 210.00056 * 22 20 18 25 25 H 1.48504 * 109.47550 * 330.00060 * 22 20 18 26 26 C 1.47164 * 117.91701 * 310.47734 * 9 8 7 27 27 C 1.53289 * 108.48050 * 51.09148 * 26 9 8 28 28 O 1.42228 * 110.64540 * 240.15028 * 7 2 1 29 29 H 1.09007 * 109.46913 * 306.22399 * 1 2 3 30 30 H 1.08994 * 109.47750 * 66.22316 * 1 2 3 31 31 H 1.09002 * 109.47212 * 186.22926 * 1 2 3 32 32 H 1.08993 * 110.61069 * 281.21765 * 5 4 2 33 33 H 1.09003 * 110.60579 * 158.24863 * 5 4 2 34 34 H 1.09003 * 110.92951 * 205.21508 * 6 5 4 35 35 H 1.08996 * 110.96511 * 81.55847 * 6 5 4 36 36 H 1.08990 * 109.64591 * 47.29907 * 8 7 2 37 37 H 1.09006 * 109.63866 * 167.92676 * 8 7 2 38 38 H 0.97006 * 119.99712 * 359.97438 * 14 12 10 39 39 H 1.08997 * 109.47405 * 299.99859 * 15 14 12 40 40 H 1.09003 * 109.46925 * 60.00275 * 15 14 12 41 41 H 1.08999 * 109.46540 * 299.99734 * 16 15 14 42 42 H 1.08995 * 109.46823 * 60.00088 * 16 15 14 43 43 H 1.08997 * 109.47526 * 300.00072 * 17 16 15 44 44 H 1.09009 * 109.47150 * 60.00165 * 17 16 15 45 45 H 0.97001 * 119.99249 * 179.97438 * 21 20 18 46 46 H 1.08996 * 109.63424 * 170.79027 * 26 9 8 47 47 H 1.09002 * 109.63045 * 291.39158 * 26 9 8 48 48 H 1.09002 * 109.50992 * 187.19605 * 27 26 9 49 49 H 1.09001 * 109.51148 * 67.04170 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0240 0.0000 4 8 2.0199 -0.7004 -1.1576 5 6 3.2370 -1.3700 -0.7622 6 6 2.9188 -1.8899 0.6641 7 6 2.0530 -0.7475 1.2353 8 6 0.8906 -1.3264 2.0379 9 7 0.1929 -0.2189 2.7126 10 6 -1.1466 -0.0917 2.6356 11 8 -1.8085 -0.9567 2.1005 12 6 -1.8170 1.1146 3.2091 13 8 -1.1498 2.0323 3.6397 14 7 -3.1624 1.1833 3.2483 15 6 -3.8194 2.3656 3.8110 16 6 -5.3375 2.1902 3.7347 17 6 -6.0237 3.4246 4.3230 18 6 -7.5189 3.2521 4.2474 19 1 -7.9378 2.3519 3.8226 20 6 -8.3520 4.2437 4.7205 21 7 -7.8419 5.3397 5.2382 22 14 -10.2053 4.0301 4.6260 23 1 -10.6919 3.3739 5.8661 24 1 -10.8503 5.3602 4.4842 25 1 -10.5474 3.1866 3.4527 26 6 1.0041 0.7444 3.4740 27 6 2.1423 1.2392 2.5743 28 8 2.8466 0.1128 2.0433 29 1 -0.3633 0.6073 0.8291 30 1 -0.3634 0.4143 -0.9403 31 1 -0.3634 -1.0216 0.1115 32 1 4.0705 -0.6681 -0.7376 33 1 3.4535 -2.2007 -1.4339 34 1 3.8321 -2.0145 1.2459 35 1 2.3555 -2.8221 0.6227 36 1 0.2014 -1.8390 1.3669 37 1 1.2716 -2.0266 2.7814 38 1 -3.6957 0.4499 2.9038 39 1 -3.5193 2.4873 4.8517 40 1 -3.5271 3.2487 3.2428 41 1 -5.6373 2.0688 2.6938 42 1 -5.6301 1.3070 4.3026 43 1 -5.7238 3.5457 5.3639 44 1 -5.7311 4.3081 3.7555 45 1 -8.4281 6.0374 5.5707 46 1 0.3832 1.5877 3.7764 47 1 1.4197 0.2569 4.3559 48 1 2.8269 1.8543 3.1585 49 1 1.7295 1.8292 1.7561 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343165304.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:42 Heat of formation + Delta-G solvation = -127.588344 kcal Electronic energy + Delta-G solvation = -30900.092283 eV Core-core repulsion = 26635.764284 eV Total energy + Delta-G solvation = -4264.327999 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.93664 -40.41332 -38.65873 -37.99029 -36.08877 -35.03766 -33.42787 -33.11169 -31.92709 -31.33952 -29.44196 -28.19305 -27.02444 -25.64473 -24.35606 -23.36159 -22.88731 -22.20795 -20.98824 -20.29718 -19.53639 -17.99140 -17.90264 -17.18246 -16.54245 -16.37266 -16.23668 -16.03370 -15.79698 -15.65741 -15.22348 -15.04497 -14.71645 -14.49846 -14.44543 -14.16633 -13.94091 -13.46310 -13.22694 -13.09251 -12.57362 -12.35317 -12.33969 -12.04004 -12.01706 -11.92952 -11.89390 -11.70794 -11.52354 -11.15210 -10.97260 -10.94657 -10.82857 -10.62605 -10.47423 -10.05644 -9.97091 -9.65549 -9.27193 -9.17323 -9.12060 -8.94080 -8.41665 -6.06494 -4.09596 1.20818 2.03726 2.99473 3.06596 3.27583 3.28645 3.35310 3.38431 3.47882 3.93874 4.06188 4.16692 4.25119 4.41206 4.54845 4.63500 4.71358 4.74045 4.90867 4.94485 5.06724 5.13318 5.14645 5.20564 5.29637 5.30160 5.38575 5.45276 5.48181 5.50713 5.58738 5.59803 5.63418 5.81608 5.95140 5.98742 6.28353 6.42547 6.46054 6.62618 6.70090 6.73768 6.88652 7.13560 7.53405 7.56747 7.67745 7.88105 7.91819 8.32445 8.96781 9.55013 11.04709 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.027502 B = 0.001995 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.863305 B =14033.374963 C =14406.483611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.056 3.944 3 H 0.076 0.924 4 O -0.368 6.368 5 C 0.048 3.952 6 C -0.141 4.141 7 C 0.078 3.922 8 C 0.089 3.911 9 N -0.588 5.588 10 C 0.513 3.487 11 O -0.515 6.515 12 C 0.503 3.497 13 O -0.516 6.516 14 N -0.684 5.684 15 C 0.112 3.888 16 C -0.123 4.123 17 C 0.025 3.975 18 C -0.523 4.523 19 H 0.056 0.944 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.894 3.106 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.015 3.985 27 C 0.046 3.954 28 O -0.364 6.364 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.082 0.918 38 H 0.413 0.587 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.261 0.739 46 H 0.170 0.830 47 H 0.074 0.926 48 H 0.112 0.888 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.051 -13.891 -7.883 29.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.002 4.002 3 H 0.094 0.906 4 O -0.288 6.288 5 C -0.029 4.029 6 C -0.179 4.179 7 C 0.037 3.963 8 C -0.034 4.034 9 N -0.323 5.323 10 C 0.296 3.704 11 O -0.390 6.390 12 C 0.284 3.716 13 O -0.395 6.395 14 N -0.334 5.334 15 C -0.010 4.010 16 C -0.161 4.161 17 C -0.013 4.013 18 C -0.562 4.562 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.722 3.278 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.106 4.106 27 C -0.031 4.031 28 O -0.283 6.283 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.132 0.868 37 H 0.100 0.900 38 H 0.249 0.751 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.186 0.814 47 H 0.093 0.907 48 H 0.130 0.870 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 25.148 -13.554 -7.945 29.652 hybrid contribution -1.261 -0.284 0.094 1.296 sum 23.887 -13.838 -7.851 28.701 Atomic orbital electron populations 1.22377 0.92884 1.03746 1.02904 1.23255 0.95853 0.96264 0.84792 0.90583 1.88966 1.39790 1.67447 1.32555 1.23582 0.88090 0.96664 0.94566 1.23087 1.01055 0.96904 0.96836 1.22710 0.91447 0.91419 0.90753 1.22383 0.94290 0.89337 0.97355 1.48044 1.05394 1.28196 1.50664 1.20128 0.82579 0.87134 0.80538 1.90777 1.63514 1.41306 1.43386 1.20022 0.83925 0.87242 0.80393 1.90288 1.61749 1.39448 1.48030 1.46132 1.05209 1.22750 1.59316 1.21919 0.94390 0.85825 0.98878 1.21940 0.90185 1.02372 1.01631 1.19030 0.94855 0.91175 0.96225 1.21188 0.91282 1.03338 1.40353 0.92565 1.25029 0.98969 0.95243 0.95229 1.69961 1.35145 1.07359 1.40785 0.86566 0.85394 0.77425 0.78451 1.20640 1.21195 1.19857 1.23962 0.95564 0.96907 0.94134 1.23082 0.94775 0.88094 0.97137 1.87889 1.36298 1.37432 1.66671 0.91314 0.91542 0.90471 0.91659 0.88444 0.88445 0.88737 0.86830 0.90017 0.75095 0.90829 0.90846 0.92350 0.92385 0.96187 0.96175 0.92892 0.81422 0.90729 0.87007 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 7.60 37.16 0.28 -1.48 16 2 C 0.06 0.56 3.25 -26.44 -0.09 0.48 16 3 H 0.08 0.79 6.68 -51.93 -0.35 0.44 16 4 O -0.37 -3.85 11.20 -35.23 -0.39 -4.25 16 5 C 0.05 0.34 7.73 38.27 0.30 0.63 16 6 C -0.14 -0.92 6.43 -24.93 -0.16 -1.08 16 7 C 0.08 0.67 0.97 -89.82 -0.09 0.59 16 8 C 0.09 0.81 4.61 -3.80 -0.02 0.79 16 9 N -0.59 -6.18 2.02 -173.08 -0.35 -6.53 16 10 C 0.51 6.40 5.21 -11.59 -0.06 6.34 16 11 O -0.51 -7.13 14.96 5.49 0.08 -7.04 16 12 C 0.50 6.85 7.79 -11.59 -0.09 6.76 16 13 O -0.52 -7.53 13.12 5.49 0.07 -7.45 16 14 N -0.68 -9.42 5.55 -60.73 -0.34 -9.76 16 15 C 0.11 1.78 5.67 -4.04 -0.02 1.75 16 16 C -0.12 -2.29 5.27 -26.73 -0.14 -2.43 16 17 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 18 C -0.52 -14.29 9.11 -34.44 -0.31 -14.61 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 21 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 22 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 26 C 0.02 0.14 6.49 -3.53 -0.02 0.12 16 27 C 0.05 0.39 6.70 37.31 0.25 0.64 16 28 O -0.36 -3.35 10.16 -35.23 -0.36 -3.71 16 29 H 0.07 0.80 4.63 -51.92 -0.24 0.56 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.87 5.28 -51.93 -0.27 0.59 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.10 0.54 8.07 -51.93 -0.42 0.12 16 35 H 0.09 0.50 7.84 -51.93 -0.41 0.10 16 36 H 0.11 1.10 4.97 -51.93 -0.26 0.85 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.41 5.23 7.96 -40.82 -0.32 4.90 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.02 0.52 8.14 -51.92 -0.42 0.09 16 45 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.17 1.85 3.83 -56.52 -0.22 1.63 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.06 0.53 6.58 -51.93 -0.34 0.19 16 LS Contribution 377.98 15.07 5.70 5.70 Total: -1.00 -31.15 377.98 -7.73 -38.87 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.44 Total: 3.03 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -0.41 Total: 0.46 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.05 Total: -41.81 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.60 Total: -22.46 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.15 -7.73 -38.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343165304.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.718 kcal (2) G-P(sol) polarization free energy of solvation -31.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds