Wall clock time and date at job start Tue Mar 31 2020 22:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.04675 * 2 1 4 4 O 1.43898 * 109.90504 * 238.82550 * 2 1 3 5 5 C 1.44431 * 106.99444 * 214.26114 * 4 2 1 6 6 C 1.55108 * 103.55031 * 39.73892 * 5 4 2 7 7 C 1.53566 * 109.90981 * 121.17847 * 2 1 3 8 8 C 1.52655 * 110.37801 * 3.19801 * 7 2 1 9 9 N 1.47264 * 108.44625 * 287.60919 * 8 7 2 10 10 C 1.34776 * 121.04496 * 130.49127 * 9 8 7 11 11 O 1.21353 * 119.99538 * 6.27828 * 10 9 8 12 12 C 1.49448 * 120.00641 * 186.27249 * 10 9 8 13 13 O 1.21353 * 119.99700 * 6.39298 * 12 10 9 14 14 N 1.34770 * 120.00442 * 186.39719 * 12 10 9 15 15 C 1.46497 * 120.00281 * 179.97438 * 14 12 10 16 16 C 1.53008 * 109.47186 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.47034 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.47102 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00050 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99812 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00044 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99701 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47167 * 90.00153 * 22 20 18 24 24 H 1.48498 * 109.47350 * 210.00056 * 22 20 18 25 25 H 1.48504 * 109.47550 * 330.00060 * 22 20 18 26 26 C 1.47164 * 117.91701 * 310.47734 * 9 8 7 27 27 C 1.53289 * 108.48050 * 51.09148 * 26 9 8 28 28 O 1.42228 * 110.64540 * 240.15028 * 7 2 1 29 29 H 1.09007 * 109.46913 * 306.22399 * 1 2 3 30 30 H 1.08994 * 109.47750 * 66.22316 * 1 2 3 31 31 H 1.09002 * 109.47212 * 186.22926 * 1 2 3 32 32 H 1.08993 * 110.61069 * 281.21765 * 5 4 2 33 33 H 1.09003 * 110.60579 * 158.24863 * 5 4 2 34 34 H 1.09003 * 110.92951 * 205.21508 * 6 5 4 35 35 H 1.08996 * 110.96511 * 81.55847 * 6 5 4 36 36 H 1.08990 * 109.64591 * 47.29907 * 8 7 2 37 37 H 1.09006 * 109.63866 * 167.92676 * 8 7 2 38 38 H 0.97006 * 119.99712 * 359.97438 * 14 12 10 39 39 H 1.08997 * 109.47405 * 299.99859 * 15 14 12 40 40 H 1.09003 * 109.46925 * 60.00275 * 15 14 12 41 41 H 1.08999 * 109.46540 * 299.99734 * 16 15 14 42 42 H 1.08995 * 109.46823 * 60.00088 * 16 15 14 43 43 H 1.08997 * 109.47526 * 300.00072 * 17 16 15 44 44 H 1.09009 * 109.47150 * 60.00165 * 17 16 15 45 45 H 0.97001 * 119.99249 * 179.97438 * 21 20 18 46 46 H 1.08996 * 109.63424 * 170.79027 * 26 9 8 47 47 H 1.09002 * 109.63045 * 291.39158 * 26 9 8 48 48 H 1.09002 * 109.50992 * 187.19605 * 27 26 9 49 49 H 1.09001 * 109.51148 * 67.04170 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0240 0.0000 4 8 2.0199 -0.7004 -1.1576 5 6 3.2370 -1.3700 -0.7622 6 6 2.9188 -1.8899 0.6641 7 6 2.0530 -0.7475 1.2353 8 6 0.8906 -1.3264 2.0379 9 7 0.1929 -0.2189 2.7126 10 6 -1.1466 -0.0917 2.6356 11 8 -1.8085 -0.9567 2.1005 12 6 -1.8170 1.1146 3.2091 13 8 -1.1498 2.0323 3.6397 14 7 -3.1624 1.1833 3.2483 15 6 -3.8194 2.3656 3.8110 16 6 -5.3375 2.1902 3.7347 17 6 -6.0237 3.4246 4.3230 18 6 -7.5189 3.2521 4.2474 19 1 -7.9378 2.3519 3.8226 20 6 -8.3520 4.2437 4.7205 21 7 -7.8419 5.3397 5.2382 22 14 -10.2053 4.0301 4.6260 23 1 -10.6919 3.3739 5.8661 24 1 -10.8503 5.3602 4.4842 25 1 -10.5474 3.1866 3.4527 26 6 1.0041 0.7444 3.4740 27 6 2.1423 1.2392 2.5743 28 8 2.8466 0.1128 2.0433 29 1 -0.3633 0.6073 0.8291 30 1 -0.3634 0.4143 -0.9403 31 1 -0.3634 -1.0216 0.1115 32 1 4.0705 -0.6681 -0.7376 33 1 3.4535 -2.2007 -1.4339 34 1 3.8321 -2.0145 1.2459 35 1 2.3555 -2.8221 0.6227 36 1 0.2014 -1.8390 1.3669 37 1 1.2716 -2.0266 2.7814 38 1 -3.6957 0.4499 2.9038 39 1 -3.5193 2.4873 4.8517 40 1 -3.5271 3.2487 3.2428 41 1 -5.6373 2.0688 2.6938 42 1 -5.6301 1.3070 4.3026 43 1 -5.7238 3.5457 5.3639 44 1 -5.7311 4.3081 3.7555 45 1 -8.4281 6.0374 5.5707 46 1 0.3832 1.5877 3.7764 47 1 1.4197 0.2569 4.3559 48 1 2.8269 1.8543 3.1585 49 1 1.7295 1.8292 1.7561 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343165304.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:41 Heat of formation + Delta-G solvation = -149.746879 kcal Electronic energy + Delta-G solvation = -30901.053149 eV Core-core repulsion = 26635.764284 eV Total energy + Delta-G solvation = -4265.288865 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.77147 -41.33846 -39.66836 -38.75665 -37.32577 -36.08708 -35.17548 -33.85294 -33.07494 -32.62213 -30.17614 -29.31749 -28.42922 -26.47335 -25.67432 -24.36951 -23.80238 -23.13025 -22.41832 -21.40924 -20.43140 -18.98115 -18.67111 -18.47902 -18.07897 -17.37898 -17.11220 -16.98710 -16.63617 -16.50717 -16.45746 -16.25787 -15.96689 -15.55494 -15.41141 -15.09311 -14.96305 -14.37485 -14.32336 -14.07805 -13.80279 -13.74860 -13.53442 -13.35396 -13.12630 -12.80429 -12.76803 -12.67336 -12.56142 -12.43044 -12.39311 -12.11551 -12.03811 -11.74809 -11.70620 -11.51294 -11.22140 -11.19887 -10.77531 -10.54806 -10.38600 -10.23961 -9.75431 -8.19797 -6.30293 0.17224 1.07224 1.42066 1.42569 1.53616 1.96094 2.23190 2.41905 2.46373 2.83482 3.12532 3.14264 3.25697 3.39542 3.56393 3.83973 3.93891 4.04989 4.06445 4.11920 4.15580 4.18021 4.26969 4.37619 4.40966 4.43393 4.52049 4.52968 4.64936 4.73600 4.79231 4.81642 4.88501 4.91336 4.96967 4.98243 5.02849 5.09130 5.15038 5.36786 5.51934 5.70975 5.73413 5.80207 5.84588 6.04037 6.07155 6.23555 6.54258 6.80791 6.86727 7.38988 8.91908 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.027502 B = 0.001995 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.863305 B =14033.374963 C =14406.483611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.057 3.943 3 H 0.068 0.932 4 O -0.390 6.390 5 C 0.041 3.959 6 C -0.134 4.134 7 C 0.078 3.922 8 C 0.088 3.912 9 N -0.582 5.582 10 C 0.516 3.484 11 O -0.531 6.531 12 C 0.503 3.497 13 O -0.527 6.527 14 N -0.681 5.681 15 C 0.127 3.873 16 C -0.107 4.107 17 C 0.025 3.975 18 C -0.542 4.542 19 H 0.063 0.937 20 C -0.002 4.002 21 N -0.932 5.932 22 Si 0.964 3.036 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.263 1.263 26 C 0.016 3.984 27 C 0.047 3.953 28 O -0.366 6.366 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.419 0.581 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.067 0.933 43 H -0.002 1.002 44 H -0.003 1.003 45 H 0.263 0.737 46 H 0.156 0.844 47 H 0.089 0.911 48 H 0.134 0.866 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.969 -15.725 -8.178 31.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.001 4.001 3 H 0.086 0.914 4 O -0.310 6.310 5 C -0.034 4.034 6 C -0.172 4.172 7 C 0.037 3.963 8 C -0.034 4.034 9 N -0.316 5.316 10 C 0.299 3.701 11 O -0.408 6.408 12 C 0.285 3.715 13 O -0.407 6.407 14 N -0.332 5.332 15 C 0.004 3.996 16 C -0.145 4.145 17 C -0.012 4.012 18 C -0.580 4.580 19 H 0.081 0.919 20 C -0.200 4.200 21 N -0.572 5.572 22 Si 0.789 3.211 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.187 1.187 26 C -0.105 4.105 27 C -0.030 4.030 28 O -0.285 6.285 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.118 0.882 38 H 0.257 0.743 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.016 0.984 44 H 0.015 0.985 45 H 0.072 0.928 46 H 0.172 0.828 47 H 0.107 0.893 48 H 0.152 0.848 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 26.104 -15.411 -8.248 31.416 hybrid contribution -1.448 0.304 0.172 1.490 sum 24.656 -15.107 -8.077 30.022 Atomic orbital electron populations 1.22295 0.93864 1.03178 1.02050 1.23195 0.95046 0.96228 0.85655 0.91388 1.88941 1.41220 1.67801 1.33022 1.23816 0.86929 0.97197 0.95489 1.23139 1.01393 0.96443 0.96218 1.22762 0.91690 0.91878 0.89973 1.22532 0.94137 0.89037 0.97684 1.48118 1.04810 1.28587 1.50078 1.19822 0.83238 0.86459 0.80558 1.90770 1.64013 1.41655 1.44384 1.20278 0.83636 0.87614 0.80003 1.90323 1.62033 1.40013 1.48303 1.45934 1.05531 1.22248 1.59494 1.21526 0.92784 0.86511 0.98775 1.21646 0.91453 0.99780 1.01606 1.18929 0.94430 0.92957 0.94931 1.21676 0.92869 1.03517 1.39908 0.91857 1.25968 1.04124 0.94958 0.94908 1.70093 1.36938 1.08293 1.41899 0.85462 0.79282 0.77487 0.78904 1.19863 1.21003 1.18725 1.23944 0.95402 0.96353 0.94777 1.23144 0.94864 0.88045 0.96897 1.87897 1.36458 1.37567 1.66594 0.92298 0.92287 0.90796 0.91411 0.86385 0.87023 0.87310 0.87381 0.88250 0.74310 0.91201 0.91458 0.91602 0.91450 0.98390 0.98495 0.92805 0.82834 0.89313 0.84813 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 7.60 71.98 0.55 -2.85 16 2 C 0.06 1.10 3.25 30.78 0.10 1.20 16 3 H 0.07 1.40 6.68 -2.39 -0.02 1.38 16 4 O -0.39 -7.76 11.20 -148.98 -1.67 -9.43 16 5 C 0.04 0.50 7.73 72.70 0.56 1.06 16 6 C -0.13 -1.39 6.43 31.76 0.20 -1.19 16 7 C 0.08 1.21 0.97 -10.27 -0.01 1.20 16 8 C 0.09 1.44 4.61 86.12 0.40 1.84 16 9 N -0.58 -11.56 2.02 -819.86 -1.66 -13.21 16 10 C 0.52 12.54 5.21 87.27 0.45 13.00 16 11 O -0.53 -14.37 14.96 -3.26 -0.05 -14.42 16 12 C 0.50 13.51 7.79 87.27 0.68 14.19 16 13 O -0.53 -15.28 13.12 -3.26 -0.04 -15.33 16 14 N -0.68 -18.44 5.55 -464.41 -2.58 -21.02 16 15 C 0.13 4.03 5.67 86.38 0.49 4.52 16 16 C -0.11 -3.95 5.27 30.60 0.16 -3.79 16 17 C 0.03 1.26 4.97 29.85 0.15 1.41 16 18 C -0.54 -29.73 9.11 25.60 0.23 -29.50 16 19 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 20 C 0.00 -0.10 5.46 84.65 0.46 0.37 16 21 N -0.93 -55.77 13.29 21.45 0.28 -55.49 16 22 Si 0.96 43.48 29.54 68.60 2.03 45.51 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 26 C 0.02 0.28 6.49 86.35 0.56 0.84 16 27 C 0.05 0.72 6.70 72.08 0.48 1.20 16 28 O -0.37 -5.98 10.16 -148.98 -1.51 -7.49 16 29 H 0.06 1.38 4.63 -2.38 -0.01 1.36 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.64 5.28 -2.39 -0.01 1.62 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.11 0.88 8.07 -2.39 -0.02 0.86 16 35 H 0.11 0.83 7.84 -2.39 -0.02 0.81 16 36 H 0.11 1.95 4.97 -2.39 -0.01 1.94 16 37 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.42 10.30 7.96 -92.70 -0.74 9.56 16 39 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.07 2.33 8.14 -2.39 -0.02 2.32 16 42 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 44 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 45 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 46 H 0.16 3.28 3.83 -75.07 -0.29 2.99 16 47 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.05 0.88 6.58 -2.39 -0.02 0.86 16 Total: -1.00 -66.86 377.98 0.24 -66.62 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -0.04 Total: 20.76 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 5.47 Total: 3.50 kcal Atomic # 7 Polarization: -85.77 SS G_CDS: -3.95 Total: -89.72 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -3.27 Total: -46.66 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -66.86 0.24 -66.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343165304.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.131 kcal (2) G-P(sol) polarization free energy of solvation -66.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds