Wall clock time and date at job start Tue Mar 31 2020 23:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.50932 * 2 1 4 4 C 1.53272 * 109.51380 * 120.15716 * 2 1 3 5 5 N 1.47164 * 108.56663 * 172.87165 * 4 2 1 6 6 C 1.34773 * 121.07391 * 128.84518 * 5 4 2 7 7 O 1.21344 * 119.99881 * 178.11262 * 6 5 4 8 8 C 1.49448 * 120.00053 * 358.11932 * 6 5 4 9 9 O 1.21354 * 119.99875 * 6.49841 * 8 6 5 10 10 N 1.34776 * 120.00254 * 186.50290 * 8 6 5 11 11 C 1.46500 * 120.00215 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.46835 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.46917 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47191 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00090 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99996 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00250 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99925 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47453 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47282 * 119.99833 * 18 16 14 21 21 H 1.48499 * 109.47013 * 239.99933 * 18 16 14 22 22 C 1.47329 * 117.85227 * 308.83036 * 5 4 2 23 23 C 1.52436 * 108.40454 * 49.27472 * 22 5 4 24 24 C 1.54840 * 110.15730 * 186.89418 * 23 22 5 25 25 C 1.55078 * 100.76784 * 208.54004 * 24 23 22 26 26 O 1.43716 * 105.28898 * 35.75636 * 25 24 23 27 27 C 1.43414 * 109.93894 * 335.65150 * 26 25 24 28 28 O 1.41975 * 111.28589 * 309.74887 * 23 22 5 29 29 H 1.08994 * 109.47020 * 180.09929 * 1 2 3 30 30 H 1.08998 * 109.47177 * 300.10061 * 1 2 3 31 31 H 1.09000 * 109.47298 * 60.09812 * 1 2 3 32 32 H 1.08996 * 109.62358 * 292.59626 * 4 2 1 33 33 H 1.09005 * 109.62386 * 52.96655 * 4 2 1 34 34 H 0.97001 * 119.99493 * 359.97438 * 10 8 6 35 35 H 1.08996 * 109.47154 * 299.99917 * 11 10 8 36 36 H 1.09004 * 109.46945 * 60.00002 * 11 10 8 37 37 H 1.09003 * 109.46964 * 299.99824 * 12 11 10 38 38 H 1.08997 * 109.47173 * 59.99967 * 12 11 10 39 39 H 1.09010 * 109.46769 * 299.99884 * 13 12 11 40 40 H 1.08997 * 109.47588 * 59.99777 * 13 12 11 41 41 H 0.97003 * 120.00417 * 179.97438 * 17 16 14 42 42 H 1.08997 * 109.67282 * 289.54632 * 22 5 4 43 43 H 1.08999 * 109.67121 * 169.00081 * 22 5 4 44 44 H 1.08998 * 111.23669 * 90.65454 * 24 23 22 45 45 H 1.09000 * 111.14528 * 326.38124 * 24 23 22 46 46 H 1.08996 * 110.29558 * 276.78003 * 25 24 23 47 47 H 1.08997 * 110.29540 * 154.74285 * 25 24 23 48 48 H 1.09000 * 109.86094 * 121.65076 * 27 26 25 49 49 H 1.08993 * 109.86115 * 242.61083 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0420 -0.7258 1.2491 5 7 3.5033 -0.8650 1.1443 6 6 4.3128 -0.4794 2.1504 7 8 5.5127 -0.6347 2.0572 8 6 3.7327 0.1392 3.3810 9 8 2.5289 0.1872 3.5262 10 7 4.5466 0.6438 4.3294 11 6 3.9779 1.2508 5.5354 12 6 5.1091 1.7401 6.4420 13 6 4.5153 2.3734 7.7018 14 6 5.6294 2.8560 8.5944 15 1 6.6581 2.7238 8.2935 16 6 5.3353 3.4662 9.7953 17 7 4.0826 3.6277 10.1616 18 14 6.7164 4.0637 10.9022 19 1 8.0248 3.7656 10.2661 20 1 6.5884 5.5291 11.1064 21 1 6.6340 3.3721 12.2137 22 6 4.0527 -1.4399 -0.0960 23 6 3.4226 -0.7179 -1.2815 24 6 3.8385 -1.4033 -2.6061 25 6 3.7761 -0.2026 -3.5856 26 8 4.2214 0.9316 -2.8236 27 6 4.0044 0.6972 -1.4255 28 8 2.0080 -0.6764 -1.1671 29 1 -0.3633 -1.0276 0.0018 30 1 -0.3633 0.5154 0.8891 31 1 -0.3634 0.5123 -0.8908 32 1 1.7925 -0.1457 2.1376 33 1 1.5814 -1.7116 1.3143 34 1 5.5088 0.6052 4.2134 35 1 3.3463 2.0936 5.2548 36 1 3.3806 0.5104 6.0677 37 1 5.7404 0.8969 6.7225 38 1 5.7068 2.4802 5.9099 39 1 3.8837 3.2165 7.4215 40 1 3.9178 1.6330 8.2337 41 1 3.8757 4.0567 11.0066 42 1 3.8148 -2.5025 -0.1448 43 1 5.1339 -1.3039 -0.1159 44 1 3.1272 -2.1791 -2.8895 45 1 4.8497 -1.8048 -2.5405 46 1 2.7537 -0.0486 -3.9304 47 1 4.4391 -0.3721 -4.4341 48 1 4.9499 0.7653 -0.8875 49 1 3.3008 1.4307 -1.0319 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343325711.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:34 Heat of formation + Delta-G solvation = -167.479673 kcal Electronic energy + Delta-G solvation = -30405.880572 eV Core-core repulsion = 26139.822755 eV Total energy + Delta-G solvation = -4266.057817 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.48789 -41.30613 -39.67359 -38.88156 -37.33155 -36.05799 -35.17463 -34.51296 -33.07895 -31.72399 -30.59289 -29.09176 -27.95760 -27.54495 -25.63213 -24.26908 -23.61649 -22.77523 -22.41525 -21.39376 -20.72709 -18.97429 -18.69753 -18.46454 -18.11634 -17.63582 -17.25836 -17.05964 -16.54222 -16.51196 -16.37586 -16.09551 -16.01821 -15.39677 -15.28701 -15.10065 -14.92291 -14.39474 -14.29390 -14.03366 -13.89913 -13.75320 -13.54928 -13.38408 -13.16547 -12.79533 -12.74337 -12.67170 -12.57733 -12.41445 -12.37018 -12.33217 -12.16707 -11.88058 -11.71303 -11.52216 -11.21068 -11.18826 -10.65388 -10.55698 -10.41187 -10.24794 -9.83566 -8.20082 -6.30516 0.16126 1.04042 1.41126 1.42080 1.54610 1.94487 2.19295 2.37143 2.42282 2.75072 3.10632 3.14053 3.21731 3.42389 3.56436 3.76815 3.89229 4.00928 4.06423 4.14021 4.17868 4.20683 4.28683 4.33825 4.43609 4.46168 4.51913 4.57452 4.67650 4.78821 4.81118 4.84088 4.91211 4.91831 4.96020 5.00689 5.02544 5.14867 5.24766 5.35044 5.51936 5.70855 5.73995 5.84492 5.85089 6.04078 6.04999 6.23424 6.51440 6.79476 6.86725 7.38840 8.91842 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022067 B = 0.001977 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.568269 B =14159.395872 C =14674.035269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.071 3.929 3 H 0.057 0.943 4 C 0.026 3.974 5 N -0.583 5.583 6 C 0.513 3.487 7 O -0.536 6.536 8 C 0.505 3.495 9 O -0.527 6.527 10 N -0.681 5.681 11 C 0.127 3.873 12 C -0.107 4.107 13 C 0.025 3.975 14 C -0.541 4.541 15 H 0.063 0.937 16 C -0.002 4.002 17 N -0.932 5.932 18 Si 0.964 3.036 19 H -0.261 1.261 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.092 3.908 23 C 0.075 3.925 24 C -0.131 4.131 25 C 0.046 3.954 26 O -0.402 6.402 27 C 0.030 3.970 28 O -0.362 6.362 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.155 0.845 33 H 0.089 0.911 34 H 0.419 0.581 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.066 0.934 39 H -0.003 1.003 40 H -0.003 1.003 41 H 0.263 0.737 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.065 0.935 47 H 0.109 0.891 48 H 0.073 0.927 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.029 -12.693 -28.557 31.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.013 3.987 3 H 0.075 0.925 4 C -0.095 4.095 5 N -0.316 5.316 6 C 0.296 3.704 7 O -0.413 6.413 8 C 0.287 3.713 9 O -0.406 6.406 10 N -0.332 5.332 11 C 0.004 3.996 12 C -0.145 4.145 13 C -0.013 4.013 14 C -0.579 4.579 15 H 0.081 0.919 16 C -0.200 4.200 17 N -0.572 5.572 18 Si 0.789 3.211 19 H -0.185 1.185 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.030 4.030 23 C 0.034 3.966 24 C -0.168 4.168 25 C -0.030 4.030 26 O -0.322 6.322 27 C -0.047 4.047 28 O -0.281 6.281 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.171 0.829 33 H 0.107 0.893 34 H 0.257 0.743 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.072 0.928 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.133 0.867 45 H 0.132 0.868 46 H 0.083 0.917 47 H 0.127 0.873 48 H 0.091 0.909 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.360 -12.567 -28.568 31.513 hybrid contribution 0.830 0.493 1.212 1.550 sum -3.530 -12.074 -27.356 30.110 Atomic orbital electron populations 1.21696 0.90056 1.03984 1.03683 1.22680 0.97171 0.95014 0.83854 0.92539 1.23975 0.77350 1.04729 1.03430 1.48112 1.08377 1.59575 1.15500 1.19983 0.86345 0.79584 0.84494 1.90758 1.14808 1.55452 1.80291 1.20195 0.86781 0.79644 0.84725 1.90344 1.14528 1.58329 1.77445 1.45928 1.11514 1.56746 1.19038 1.21529 0.96857 0.97542 0.83644 1.21647 0.96798 1.00394 0.95661 1.18932 0.95514 0.94659 0.92166 1.21703 0.93944 1.38122 1.04112 0.91870 1.25965 0.98008 0.96246 0.99743 1.70093 1.19447 1.44571 1.23130 0.85414 0.79458 0.77851 0.78405 1.18520 1.20572 1.20564 1.22386 1.00621 0.98944 0.81049 1.22791 0.82537 0.94536 0.96727 1.23294 1.04576 0.98829 0.90108 1.23633 1.00771 0.83574 0.95004 1.88451 1.84852 1.41918 1.16952 1.23652 1.00575 0.96908 0.83538 1.87848 1.18935 1.77460 1.43896 0.90768 0.89596 0.91043 0.82905 0.89321 0.74332 0.91261 0.91344 0.91539 0.91521 0.98416 0.98418 0.92796 0.87753 0.87589 0.86727 0.86780 0.91688 0.87337 0.90887 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.57 71.98 0.69 -1.06 16 2 C 0.07 1.18 3.18 30.69 0.10 1.28 16 3 H 0.06 1.06 6.27 -2.39 -0.01 1.05 16 4 C 0.03 0.48 5.67 86.34 0.49 0.97 16 5 N -0.58 -11.84 2.95 -820.15 -2.42 -14.27 16 6 C 0.51 12.78 7.78 87.27 0.68 13.46 16 7 O -0.54 -14.95 15.99 -3.23 -0.05 -15.01 16 8 C 0.51 13.72 7.81 87.27 0.68 14.40 16 9 O -0.53 -15.45 13.05 -3.26 -0.04 -15.49 16 10 N -0.68 -18.59 5.55 -464.41 -2.58 -21.16 16 11 C 0.13 4.05 5.67 86.38 0.49 4.54 16 12 C -0.11 -3.96 5.27 30.59 0.16 -3.80 16 13 C 0.03 1.25 4.97 29.85 0.15 1.40 16 14 C -0.54 -29.70 9.11 25.60 0.23 -29.46 16 15 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 16 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 17 N -0.93 -55.76 13.29 21.45 0.28 -55.47 16 18 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 19 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 22 C 0.09 1.46 5.20 86.03 0.45 1.91 16 23 C 0.08 1.15 0.82 -10.12 -0.01 1.15 16 24 C -0.13 -1.29 6.32 31.93 0.20 -1.09 16 25 C 0.05 0.59 7.78 72.69 0.57 1.15 16 26 O -0.40 -8.27 11.37 -148.98 -1.69 -9.96 16 27 C 0.03 0.58 6.91 72.21 0.50 1.08 16 28 O -0.36 -6.15 9.91 -148.97 -1.48 -7.63 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.15 3.40 3.93 -73.42 -0.29 3.11 16 33 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.42 10.38 7.96 -92.71 -0.74 9.65 16 35 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 37 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 40 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 41 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 42 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.11 1.77 6.84 -2.39 -0.02 1.76 16 44 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.11 0.76 8.00 -2.39 -0.02 0.74 16 46 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 47 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.07 1.49 7.60 -2.39 -0.02 1.47 16 49 H 0.06 1.34 6.07 -2.39 -0.01 1.32 16 Total: -1.00 -67.66 391.19 -0.17 -67.83 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -0.05 Total: 19.34 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 5.84 Total: 6.28 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -4.71 Total: -90.90 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -3.26 Total: -48.09 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -67.66 -0.17 -67.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343325711.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.650 kcal (2) G-P(sol) polarization free energy of solvation -67.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds