Wall clock time and date at job start Tue Mar 31 2020 23:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46904 * 109.47015 * 119.99841 * 2 1 3 13 13 C 1.46904 * 110.99997 * 176.04948 * 12 2 1 14 14 C 1.46902 * 110.99713 * 299.99977 * 12 2 1 15 15 C 1.50701 * 109.46751 * 170.00089 * 14 12 2 16 16 O 1.21284 * 120.00143 * 359.97438 * 15 14 12 17 17 N 1.34783 * 120.00129 * 180.02562 * 15 14 12 18 18 C 1.46498 * 120.00212 * 180.02562 * 17 15 14 19 19 H 1.09001 * 109.47034 * 324.99697 * 18 17 15 20 20 C 1.52998 * 109.47414 * 84.99609 * 18 17 15 21 21 C 1.52999 * 109.46840 * 204.99433 * 18 17 15 22 22 C 1.50701 * 109.46991 * 65.00017 * 21 18 17 23 23 C 1.38421 * 120.02443 * 269.71903 * 22 21 18 24 24 F 1.35099 * 120.01001 * 0.02562 * 23 22 21 25 25 C 1.38479 * 119.97319 * 179.78980 * 23 22 21 26 26 C 1.38205 * 120.02670 * 0.49152 * 25 23 22 27 27 C 1.38210 * 120.04761 * 359.74138 * 26 25 23 28 28 C 1.38416 * 120.02689 * 89.99751 * 22 21 18 29 29 F 1.35101 * 120.01501 * 359.97438 * 28 22 21 30 30 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 32 32 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 33 33 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47028 * 59.99795 * 13 12 2 35 35 H 1.09004 * 109.46903 * 179.97438 * 13 12 2 36 36 H 1.09000 * 109.47139 * 299.99593 * 13 12 2 37 37 H 1.08993 * 109.47467 * 289.99703 * 14 12 2 38 38 H 1.09003 * 109.47418 * 50.00500 * 14 12 2 39 39 H 0.97003 * 119.99441 * 359.97438 * 17 15 14 40 40 H 1.09001 * 109.47078 * 180.02562 * 20 18 17 41 41 H 1.09004 * 109.46964 * 300.00134 * 20 18 17 42 42 H 1.08993 * 109.47222 * 59.99838 * 20 18 17 43 43 H 1.09004 * 109.46828 * 184.99282 * 21 18 17 44 44 H 1.08997 * 109.47485 * 304.99819 * 21 18 17 45 45 H 1.07996 * 119.98257 * 180.22736 * 25 23 22 46 46 H 1.07992 * 119.97640 * 179.76372 * 26 25 23 47 47 H 1.08007 * 119.98636 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0197 -0.6925 1.1995 13 6 3.4851 -0.7945 1.1872 14 6 1.5486 -0.0263 2.4211 15 6 1.8579 -0.8910 3.6159 16 8 2.4154 -1.9575 3.4647 17 7 1.5141 -0.4797 4.8526 18 6 1.8152 -1.3201 6.0142 19 1 1.7149 -2.3700 5.7389 20 6 3.2468 -1.0501 6.4816 21 6 0.8391 -0.9940 7.1463 22 6 -0.5583 -1.3751 6.7300 23 6 -1.3656 -0.4522 6.0876 24 9 -0.9009 0.7905 5.8330 25 6 -2.6479 -0.8049 5.7016 26 6 -3.1253 -2.0745 5.9667 27 6 -2.3218 -2.9952 6.6124 28 6 -1.0375 -2.6463 6.9949 29 9 -0.2525 -3.5465 7.6264 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 1.9028 -0.5285 -4.4375 34 1 3.9186 0.2052 1.1592 35 1 3.8209 -1.3108 2.0865 36 1 3.8030 -1.3531 0.3069 37 1 2.0518 0.9346 2.5281 38 1 0.4721 0.1325 2.3564 39 1 1.0679 0.3731 4.9734 40 1 3.4710 -1.6757 7.3456 41 1 3.9423 -1.2823 5.6750 42 1 3.3472 -0.0003 6.7569 43 1 1.1177 -1.5542 8.0389 44 1 0.8756 0.0739 7.3613 45 1 -3.2765 -0.0862 5.1971 46 1 -4.1268 -2.3475 5.6688 47 1 -2.6958 -3.9873 6.8186 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345851475.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:53 Heat of formation + Delta-G solvation = -85.614033 kcal Electronic energy + Delta-G solvation = -30608.734464 eV Core-core repulsion = 26235.139092 eV Total energy + Delta-G solvation = -4373.595372 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.39570 -49.31494 -39.87408 -39.11206 -37.05472 -35.86589 -32.77328 -32.58600 -30.88651 -30.64573 -30.11242 -27.80063 -26.99373 -24.73418 -23.85985 -23.24758 -22.72102 -21.27421 -20.37171 -19.34761 -18.52033 -17.66887 -17.10756 -16.67881 -16.52188 -16.37910 -15.91812 -15.80479 -15.59225 -15.27836 -14.85279 -14.68595 -14.40264 -14.04868 -13.97035 -13.60371 -13.35097 -13.12097 -12.94433 -12.78011 -12.68325 -12.43977 -12.39189 -12.17511 -12.08704 -11.99266 -11.64714 -11.41315 -11.22759 -11.00429 -10.89802 -10.56912 -10.54677 -10.10126 -9.53432 -9.31887 -9.22106 -9.11995 -8.99154 -8.92417 -8.54582 -7.30754 -6.04175 -4.02655 0.59954 0.61013 2.97399 2.99013 3.23261 3.26493 3.35285 3.38537 3.51715 4.03280 4.05259 4.27397 4.40569 4.42574 4.58931 4.78326 4.86968 4.95142 5.07580 5.14118 5.26533 5.28285 5.37739 5.46819 5.49263 5.56192 5.60307 5.64750 5.66061 5.72999 5.79603 5.91245 6.08050 6.18414 6.31889 6.39076 6.41758 6.46109 6.56042 6.67468 6.79714 7.05388 7.27815 7.55245 7.64712 7.96716 8.09496 8.56699 8.68013 9.04471 9.56984 11.08651 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.014192 B = 0.003131 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.421314 B = 8941.466381 C = 9813.190881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.182 3.818 3 H -0.002 1.002 4 C -0.504 4.504 5 H 0.085 0.915 6 C 0.070 3.930 7 N -0.899 5.899 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.270 1.270 11 H -0.297 1.297 12 N -0.508 5.508 13 C 0.034 3.966 14 C 0.029 3.971 15 C 0.516 3.484 16 O -0.515 6.515 17 N -0.738 5.738 18 C 0.149 3.851 19 H 0.090 0.910 20 C -0.162 4.162 21 C -0.088 4.088 22 C -0.150 4.150 23 C 0.133 3.867 24 F -0.129 7.129 25 C -0.159 4.159 26 C -0.064 4.064 27 C -0.161 4.161 28 C 0.131 3.869 29 F -0.128 7.128 30 H 0.062 0.938 31 H 0.027 0.973 32 H 0.043 0.957 33 H 0.264 0.736 34 H 0.006 0.994 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.100 0.900 39 H 0.396 0.604 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.144 0.856 46 H 0.144 0.856 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.237 2.001 26.411 28.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.075 3.925 3 H 0.016 0.984 4 C -0.542 4.542 5 H 0.103 0.897 6 C -0.132 4.132 7 N -0.537 5.537 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.195 1.195 11 H -0.225 1.225 12 N -0.232 5.232 13 C -0.114 4.114 14 C -0.103 4.103 15 C 0.303 3.697 16 O -0.388 6.388 17 N -0.394 5.394 18 C 0.044 3.956 19 H 0.108 0.892 20 C -0.220 4.220 21 C -0.126 4.126 22 C -0.152 4.152 23 C 0.113 3.887 24 F -0.107 7.107 25 C -0.178 4.178 26 C -0.083 4.083 27 C -0.180 4.180 28 C 0.112 3.888 29 F -0.107 7.107 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.024 0.976 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.118 0.882 39 H 0.232 0.768 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.114 0.886 44 H 0.105 0.895 45 H 0.162 0.838 46 H 0.162 0.838 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.946 0.738 26.080 27.581 hybrid contribution -0.429 2.163 -0.144 2.209 sum -9.374 2.900 25.936 27.730 Atomic orbital electron populations 1.22239 0.98640 1.01472 0.98102 1.19745 0.91403 0.92608 0.88784 0.98439 1.20980 1.31859 1.13607 0.87722 0.89717 1.24923 0.95872 0.96603 0.95778 1.69883 1.45739 1.40251 0.97844 0.86888 0.80790 0.83853 0.76811 1.20528 1.19487 1.22476 1.61694 1.10982 1.50954 0.99594 1.22375 0.86958 0.98847 1.03196 1.22056 1.02598 0.94882 0.90757 1.20890 0.77921 0.87174 0.83724 1.90657 1.40174 1.22678 1.85325 1.46262 1.63352 1.23696 1.06110 1.20821 0.93456 0.96781 0.84531 0.89205 1.22165 0.96214 1.01765 1.01858 1.20848 0.89276 1.03416 0.99058 1.19788 0.98086 0.93284 1.04048 1.17148 0.92703 0.80005 0.98821 1.91466 1.88738 1.38659 1.91879 1.21245 0.94763 0.98633 1.03153 1.20870 1.00052 0.91724 0.95611 1.21240 0.92849 1.01840 1.02025 1.17186 0.89302 0.86224 0.96125 1.91528 1.73887 1.65990 1.79260 0.91880 0.95408 0.93877 0.92633 0.97560 0.91734 0.89983 0.93171 0.88240 0.76838 0.91684 0.91467 0.92427 0.88554 0.89500 0.83849 0.83825 0.83944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.47 37.16 0.31 -2.93 16 2 C 0.18 4.41 1.65 -68.86 -0.11 4.29 16 3 H 0.00 -0.05 7.20 -51.93 -0.37 -0.42 16 4 C -0.50 -14.38 8.51 -34.44 -0.29 -14.68 16 5 H 0.08 2.66 6.64 -52.49 -0.35 2.31 16 6 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 7 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 8 Si 0.89 21.94 24.37 -169.99 -4.14 17.80 16 9 H -0.28 -6.69 6.87 56.52 0.39 -6.30 16 10 H -0.27 -6.38 6.53 56.52 0.37 -6.01 16 11 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 12 N -0.51 -11.23 4.36 -237.72 -1.04 -12.27 16 13 C 0.03 0.74 8.88 60.07 0.53 1.27 16 14 C 0.03 0.50 5.26 -4.97 -0.03 0.48 16 15 C 0.52 8.61 7.49 -10.98 -0.08 8.53 16 16 O -0.51 -10.47 14.00 5.55 0.08 -10.39 16 17 N -0.74 -9.19 4.53 -53.81 -0.24 -9.44 16 18 C 0.15 1.65 2.56 -67.93 -0.17 1.47 16 19 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 20 C -0.16 -1.60 9.48 37.16 0.35 -1.25 16 21 C -0.09 -0.75 4.54 -27.88 -0.13 -0.88 16 22 C -0.15 -1.43 4.96 -104.49 -0.52 -1.95 16 23 C 0.13 1.24 6.90 -39.43 -0.27 0.97 16 24 F -0.13 -1.21 14.56 2.25 0.03 -1.18 16 25 C -0.16 -1.26 10.03 -39.50 -0.40 -1.66 16 26 C -0.06 -0.45 10.04 -39.60 -0.40 -0.85 16 27 C -0.16 -1.27 10.02 -39.50 -0.40 -1.66 16 28 C 0.13 1.26 7.24 -39.43 -0.29 0.97 16 29 F -0.13 -1.31 16.48 2.25 0.04 -1.28 16 30 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.03 0.51 6.20 -51.93 -0.32 0.18 16 32 H 0.04 0.98 3.27 -51.93 -0.17 0.81 16 33 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 35 H 0.06 1.34 5.82 -51.93 -0.30 1.04 16 36 H 0.08 1.95 6.23 -51.93 -0.32 1.63 16 37 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 38 H 0.10 1.62 5.83 -51.93 -0.30 1.32 16 39 H 0.40 4.22 6.56 -40.82 -0.27 3.95 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.10 0.71 7.64 -51.93 -0.40 0.31 16 44 H 0.09 0.64 7.63 -51.93 -0.40 0.24 16 45 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 46 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 47 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 LS Contribution 376.17 15.07 5.67 5.67 Total: -1.00 -33.61 376.17 -7.39 -41.00 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.58 Total: 2.94 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -1.98 Total: -5.94 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -0.51 Total: -48.61 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.39 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.07 Total: -2.46 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.14 Total: 17.80 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.61 -7.39 -41.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345851475.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.615 kcal (2) G-P(sol) polarization free energy of solvation -33.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds