Wall clock time and date at job start Tue Mar 31 2020 23:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34236 * 116.99449 * 2 1 4 4 O 1.20828 * 119.99846 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99765 * 180.02562 * 3 2 1 6 6 N 1.46493 * 109.47048 * 179.97438 * 5 3 2 7 7 C 1.37104 * 120.00142 * 263.98805 * 6 5 3 8 8 H 1.07998 * 120.00247 * 197.00341 * 7 6 5 9 9 C 1.38955 * 119.99718 * 17.00517 * 7 6 5 10 10 N 1.31411 * 120.00051 * 21.26730 * 9 7 6 11 11 Si 1.86798 * 119.99595 * 201.27044 * 9 7 6 12 12 H 1.48495 * 109.47501 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47109 * 120.00353 * 11 9 7 14 14 H 1.48503 * 109.46788 * 239.99784 * 11 9 7 15 15 C 1.34776 * 120.00147 * 83.98810 * 6 5 3 16 16 O 1.21291 * 120.00204 * 359.97438 * 15 6 5 17 17 C 1.50706 * 119.99954 * 180.02562 * 15 6 5 18 18 C 1.53006 * 109.46819 * 180.02562 * 17 15 6 19 19 H 1.09007 * 109.46985 * 304.99646 * 18 17 15 20 20 C 1.53002 * 109.46853 * 185.00323 * 18 17 15 21 21 N 1.46490 * 109.47466 * 65.00024 * 18 17 15 22 22 C 1.34773 * 120.00300 * 205.00140 * 21 18 17 23 23 O 1.21286 * 119.99934 * 359.97438 * 22 21 18 24 24 C 1.50705 * 120.00475 * 180.02562 * 22 21 18 25 25 C 1.55239 * 110.57512 * 294.87163 * 24 22 21 26 26 C 1.54892 * 102.58601 * 203.33654 * 25 24 22 27 27 C 1.54272 * 104.31194 * 37.93419 * 26 25 24 28 28 C 1.53878 * 106.59767 * 336.32043 * 27 26 25 29 29 H 1.08997 * 109.47549 * 300.00220 * 1 2 3 30 30 H 1.09001 * 109.46876 * 60.00833 * 1 2 3 31 31 H 1.09005 * 109.46571 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47670 * 59.99560 * 5 3 2 33 33 H 1.09005 * 109.46738 * 299.99731 * 5 3 2 34 34 H 0.96992 * 119.99956 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.47381 * 60.00353 * 17 15 6 36 36 H 1.08999 * 109.47365 * 299.99743 * 17 15 6 37 37 H 1.09007 * 109.46773 * 299.99453 * 20 18 17 38 38 H 1.08996 * 109.47460 * 59.99443 * 20 18 17 39 39 H 1.09000 * 109.47129 * 179.97438 * 20 18 17 40 40 H 0.97009 * 120.00168 * 24.99414 * 21 18 17 41 41 H 1.08993 * 110.43326 * 57.45023 * 24 22 21 42 42 H 1.08998 * 110.90219 * 85.04849 * 25 24 22 43 43 H 1.09000 * 110.76831 * 321.56408 * 25 24 22 44 44 H 1.08996 * 110.49056 * 279.19040 * 26 25 24 45 45 H 1.09002 * 110.48750 * 156.67209 * 26 25 24 46 46 H 1.08996 * 110.03507 * 95.60733 * 27 26 25 47 47 H 1.08996 * 110.03011 * 216.98924 * 27 26 25 48 48 H 1.08998 * 110.02734 * 119.28534 * 28 27 26 49 49 H 1.08993 * 110.03412 * 240.67057 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4031 2.2094 -0.0005 5 6 3.5662 1.2751 -0.0006 6 7 3.9815 2.6799 -0.0011 7 6 4.2946 3.3018 -1.1822 8 1 4.8537 4.2258 -1.1743 9 6 3.8927 2.7432 -2.3893 10 7 2.8930 1.8908 -2.4183 11 14 4.7736 3.2039 -3.9708 12 1 5.8554 4.1756 -3.6699 13 1 5.3591 1.9849 -4.5845 14 1 3.8061 3.8177 -4.9155 15 6 4.0557 3.3611 1.1595 16 8 3.7783 2.8112 2.2043 17 6 4.4824 4.8065 1.1589 18 6 4.4833 5.3385 2.5934 19 1 3.5036 5.1748 3.0423 20 6 4.7948 6.8365 2.5816 21 7 5.5025 4.6340 3.3750 22 6 5.3789 4.5387 4.7136 23 8 4.4239 5.0368 5.2714 24 6 6.4277 3.8144 5.5177 25 6 6.4483 2.3054 5.1540 26 6 7.0738 1.6624 6.4167 27 6 6.4804 2.4698 7.5897 28 6 6.0696 3.8381 7.0180 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9557 0.7811 -0.8907 33 1 3.9563 0.7808 0.8892 34 1 2.6127 1.5005 -3.2609 35 1 3.7876 5.3902 0.5550 36 1 5.4855 4.8891 0.7405 37 1 5.7746 7.0003 2.1327 38 1 4.0365 7.3607 2.0001 39 1 4.7951 7.2156 3.6035 40 1 6.2665 4.2358 2.9289 41 1 7.4087 4.2597 5.3525 42 1 7.0726 2.1248 4.2790 43 1 5.4368 1.9331 4.9917 44 1 8.1592 1.7602 6.3968 45 1 6.7875 0.6133 6.4923 46 1 5.6076 1.9562 7.9927 47 1 7.2300 2.6002 8.3701 48 1 4.9974 3.9885 7.1437 49 1 6.6194 4.6333 7.5213 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348805195.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:35 Heat of formation + Delta-G solvation = -166.658648 kcal Electronic energy + Delta-G solvation = -31462.324168 eV Core-core repulsion = 27196.301954 eV Total energy + Delta-G solvation = -4266.022214 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.93384 -39.41772 -38.39543 -37.08307 -35.67956 -34.97519 -34.52323 -31.65973 -31.41644 -29.18196 -28.71146 -28.49227 -27.30374 -26.02493 -24.59920 -22.61222 -20.93791 -20.41683 -20.06921 -19.46139 -19.15946 -17.40472 -16.88361 -16.58941 -16.26417 -15.85855 -15.60901 -15.43376 -15.19260 -14.72283 -14.46757 -14.30126 -14.04384 -13.63148 -13.42242 -13.27862 -13.09954 -12.66222 -12.50174 -12.36609 -12.09180 -11.84480 -11.63158 -11.42553 -11.39400 -11.33798 -11.25255 -11.17436 -11.06191 -11.03220 -10.84506 -10.77234 -10.69736 -10.49967 -10.41380 -10.28058 -9.82210 -9.60352 -9.32337 -9.04892 -8.69211 -8.50278 -7.99316 -6.55958 -4.04751 3.02219 3.06369 3.14317 3.17573 3.46341 3.59401 3.68540 3.97818 4.05221 4.53746 4.56462 4.64115 4.81827 4.93524 5.21447 5.34971 5.35819 5.50463 5.52092 5.56775 5.62068 5.65231 5.67038 5.69715 5.78077 5.89508 5.92666 5.93091 5.95070 5.96614 6.07873 6.09989 6.20933 6.24134 6.32654 6.35159 6.35628 6.41520 6.46152 6.58888 6.64766 6.97635 7.28312 7.44714 7.56500 7.94736 8.17562 8.67372 8.92988 9.10056 9.32841 9.74047 10.51559 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011441 B = 0.003541 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.688615 B = 7904.806918 C = 8953.755102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.377 6.377 3 C 0.484 3.516 4 O -0.499 6.499 5 C 0.158 3.842 6 N -0.431 5.431 7 C -0.337 4.337 8 H 0.104 0.896 9 C 0.037 3.963 10 N -0.867 5.867 11 Si 0.924 3.076 12 H -0.268 1.268 13 H -0.279 1.279 14 H -0.282 1.282 15 C 0.468 3.532 16 O -0.590 6.590 17 C -0.128 4.128 18 C 0.158 3.842 19 H 0.091 0.909 20 C -0.160 4.160 21 N -0.705 5.705 22 C 0.526 3.474 23 O -0.549 6.549 24 C -0.114 4.114 25 C -0.111 4.111 26 C -0.123 4.123 27 C -0.124 4.124 28 C -0.111 4.111 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.080 0.920 34 H 0.272 0.728 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.395 0.605 41 H 0.093 0.907 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.083 0.917 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.156 -0.083 8.112 11.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.294 6.294 3 C 0.325 3.675 4 O -0.383 6.383 5 C 0.033 3.967 6 N -0.151 5.151 7 C -0.464 4.464 8 H 0.122 0.878 9 C -0.168 4.168 10 N -0.505 5.505 11 Si 0.750 3.250 12 H -0.192 1.192 13 H -0.205 1.205 14 H -0.209 1.209 15 C 0.257 3.743 16 O -0.475 6.475 17 C -0.168 4.168 18 C 0.053 3.947 19 H 0.109 0.891 20 C -0.218 4.218 21 N -0.354 5.354 22 C 0.312 3.688 23 O -0.427 6.427 24 C -0.135 4.135 25 C -0.149 4.149 26 C -0.161 4.161 27 C -0.162 4.162 28 C -0.149 4.149 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.138 0.862 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.228 0.772 41 H 0.112 0.888 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.102 0.898 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.979 0.213 8.853 11.274 hybrid contribution 0.307 0.064 -1.573 1.604 sum 7.286 0.277 7.280 10.303 Atomic orbital electron populations 1.22929 0.78717 1.01785 1.01639 1.86455 1.21690 1.35573 1.85730 1.23979 0.92324 0.80549 0.70632 1.90515 1.66488 1.36382 1.44942 1.20425 0.87184 0.85818 1.03323 1.43431 1.57430 1.07994 1.06220 1.19651 1.34501 1.09991 0.82281 0.87791 1.25221 0.94799 0.97103 0.99638 1.69859 1.22262 1.30505 1.27847 0.85927 0.79342 0.78526 0.81200 1.19195 1.20470 1.20855 1.20127 0.82207 0.88178 0.83745 1.90583 1.54906 1.70233 1.31799 1.21746 1.03401 0.95621 0.96062 1.20697 0.93359 0.90064 0.90594 0.89092 1.22171 1.01676 0.95924 1.02072 1.45813 1.26193 1.56694 1.06660 1.20323 0.86753 0.79266 0.82468 1.90635 1.32913 1.48477 1.70707 1.22198 0.98273 0.96949 0.96074 1.22522 1.02395 0.92282 0.97702 1.22354 0.99829 0.99352 0.94562 1.22143 1.00430 0.95821 0.97769 1.22047 1.03368 0.96833 0.92664 0.93152 0.92632 0.89627 0.86167 0.90183 0.91752 0.88175 0.89728 0.92683 0.91656 0.92377 0.77157 0.88836 0.90984 0.90247 0.91697 0.91533 0.91808 0.92052 0.89796 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.84 16 2 O -0.38 -8.19 10.57 -39.27 -0.41 -8.61 16 3 C 0.48 11.96 6.13 36.00 0.22 12.18 16 4 O -0.50 -13.87 15.76 -18.75 -0.30 -14.17 16 5 C 0.16 3.69 5.14 -5.20 -0.03 3.66 16 6 N -0.43 -10.23 2.18 -116.10 -0.25 -10.48 16 7 C -0.34 -7.95 9.14 -14.93 -0.14 -8.09 16 8 H 0.10 2.27 6.56 -52.49 -0.34 1.92 16 9 C 0.04 0.89 4.88 -17.47 -0.09 0.81 16 10 N -0.87 -21.88 9.27 55.50 0.51 -21.37 16 11 Si 0.92 18.43 29.60 -169.99 -5.03 13.39 16 12 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 13 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 14 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 15 C 0.47 10.55 7.28 -10.98 -0.08 10.47 16 16 O -0.59 -14.54 15.04 5.55 0.08 -14.46 16 17 C -0.13 -2.31 3.69 -27.88 -0.10 -2.41 16 18 C 0.16 2.68 2.13 -67.93 -0.14 2.54 16 19 H 0.09 1.90 7.39 -51.92 -0.38 1.51 16 20 C -0.16 -2.22 9.48 37.16 0.35 -1.87 16 21 N -0.70 -11.01 4.21 -53.80 -0.23 -11.23 16 22 C 0.53 8.66 7.10 -10.98 -0.08 8.58 16 23 O -0.55 -11.09 15.09 5.55 0.08 -11.00 16 24 C -0.11 -1.43 3.25 -89.92 -0.29 -1.73 16 25 C -0.11 -1.37 6.34 -24.55 -0.16 -1.52 16 26 C -0.12 -1.24 6.82 -25.07 -0.17 -1.41 16 27 C -0.12 -1.27 6.80 -25.61 -0.17 -1.45 16 28 C -0.11 -1.36 6.18 -25.61 -0.16 -1.52 16 29 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 30 H 0.05 1.02 8.13 -51.93 -0.42 0.59 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.12 2.79 6.38 -51.93 -0.33 2.46 16 33 H 0.08 1.74 7.61 -51.93 -0.40 1.35 16 34 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 35 H 0.10 1.84 8.10 -51.93 -0.42 1.42 16 36 H 0.08 1.33 7.69 -51.93 -0.40 0.94 16 37 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.40 5.37 8.60 -40.82 -0.35 5.02 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.08 1.21 8.06 -51.93 -0.42 0.79 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.08 1.24 6.85 -51.93 -0.36 0.89 16 49 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 399.34 15.07 6.02 6.02 Total: -1.00 -32.32 399.34 -7.52 -39.84 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -8.03 Total: 11.99 kcal Atomic # 6 Polarization: 20.05 SS G_CDS: 0.03 Total: 20.08 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.03 Total: -43.08 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: -0.54 Total: -48.24 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.39 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.32 -7.52 -39.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348805195.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.823 kcal (2) G-P(sol) polarization free energy of solvation -32.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds