Wall clock time and date at job start Tue Mar 31 2020 23:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34236 * 116.99449 * 2 1 4 4 O 1.20828 * 119.99846 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99765 * 180.02562 * 3 2 1 6 6 N 1.46493 * 109.47048 * 179.97438 * 5 3 2 7 7 C 1.37104 * 120.00142 * 263.98805 * 6 5 3 8 8 H 1.07998 * 120.00247 * 197.00341 * 7 6 5 9 9 C 1.38955 * 119.99718 * 17.00517 * 7 6 5 10 10 N 1.31411 * 120.00051 * 21.26730 * 9 7 6 11 11 Si 1.86798 * 119.99595 * 201.27044 * 9 7 6 12 12 H 1.48495 * 109.47501 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47109 * 120.00353 * 11 9 7 14 14 H 1.48503 * 109.46788 * 239.99784 * 11 9 7 15 15 C 1.34776 * 120.00147 * 83.98810 * 6 5 3 16 16 O 1.21291 * 120.00204 * 359.97438 * 15 6 5 17 17 C 1.50706 * 119.99954 * 180.02562 * 15 6 5 18 18 C 1.53006 * 109.46819 * 180.02562 * 17 15 6 19 19 H 1.09007 * 109.46985 * 304.99646 * 18 17 15 20 20 C 1.53002 * 109.46853 * 185.00323 * 18 17 15 21 21 N 1.46490 * 109.47466 * 65.00024 * 18 17 15 22 22 C 1.34773 * 120.00300 * 205.00140 * 21 18 17 23 23 O 1.21286 * 119.99934 * 359.97438 * 22 21 18 24 24 C 1.50705 * 120.00475 * 180.02562 * 22 21 18 25 25 C 1.55239 * 110.57512 * 294.87163 * 24 22 21 26 26 C 1.54892 * 102.58601 * 203.33654 * 25 24 22 27 27 C 1.54272 * 104.31194 * 37.93419 * 26 25 24 28 28 C 1.53878 * 106.59767 * 336.32043 * 27 26 25 29 29 H 1.08997 * 109.47549 * 300.00220 * 1 2 3 30 30 H 1.09001 * 109.46876 * 60.00833 * 1 2 3 31 31 H 1.09005 * 109.46571 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47670 * 59.99560 * 5 3 2 33 33 H 1.09005 * 109.46738 * 299.99731 * 5 3 2 34 34 H 0.96992 * 119.99956 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.47381 * 60.00353 * 17 15 6 36 36 H 1.08999 * 109.47365 * 299.99743 * 17 15 6 37 37 H 1.09007 * 109.46773 * 299.99453 * 20 18 17 38 38 H 1.08996 * 109.47460 * 59.99443 * 20 18 17 39 39 H 1.09000 * 109.47129 * 179.97438 * 20 18 17 40 40 H 0.97009 * 120.00168 * 24.99414 * 21 18 17 41 41 H 1.08993 * 110.43326 * 57.45023 * 24 22 21 42 42 H 1.08998 * 110.90219 * 85.04849 * 25 24 22 43 43 H 1.09000 * 110.76831 * 321.56408 * 25 24 22 44 44 H 1.08996 * 110.49056 * 279.19040 * 26 25 24 45 45 H 1.09002 * 110.48750 * 156.67209 * 26 25 24 46 46 H 1.08996 * 110.03507 * 95.60733 * 27 26 25 47 47 H 1.08996 * 110.03011 * 216.98924 * 27 26 25 48 48 H 1.08998 * 110.02734 * 119.28534 * 28 27 26 49 49 H 1.08993 * 110.03412 * 240.67057 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4031 2.2094 -0.0005 5 6 3.5662 1.2751 -0.0006 6 7 3.9815 2.6799 -0.0011 7 6 4.2946 3.3018 -1.1822 8 1 4.8537 4.2258 -1.1743 9 6 3.8927 2.7432 -2.3893 10 7 2.8930 1.8908 -2.4183 11 14 4.7736 3.2039 -3.9708 12 1 5.8554 4.1756 -3.6699 13 1 5.3591 1.9849 -4.5845 14 1 3.8061 3.8177 -4.9155 15 6 4.0557 3.3611 1.1595 16 8 3.7783 2.8112 2.2043 17 6 4.4824 4.8065 1.1589 18 6 4.4833 5.3385 2.5934 19 1 3.5036 5.1748 3.0423 20 6 4.7948 6.8365 2.5816 21 7 5.5025 4.6340 3.3750 22 6 5.3789 4.5387 4.7136 23 8 4.4239 5.0368 5.2714 24 6 6.4277 3.8144 5.5177 25 6 6.4483 2.3054 5.1540 26 6 7.0738 1.6624 6.4167 27 6 6.4804 2.4698 7.5897 28 6 6.0696 3.8381 7.0180 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9557 0.7811 -0.8907 33 1 3.9563 0.7808 0.8892 34 1 2.6127 1.5005 -3.2609 35 1 3.7876 5.3902 0.5550 36 1 5.4855 4.8891 0.7405 37 1 5.7746 7.0003 2.1327 38 1 4.0365 7.3607 2.0001 39 1 4.7951 7.2156 3.6035 40 1 6.2665 4.2358 2.9289 41 1 7.4087 4.2597 5.3525 42 1 7.0726 2.1248 4.2790 43 1 5.4368 1.9331 4.9917 44 1 8.1592 1.7602 6.3968 45 1 6.7875 0.6133 6.4923 46 1 5.6076 1.9562 7.9927 47 1 7.2300 2.6002 8.3701 48 1 4.9974 3.9885 7.1437 49 1 6.6194 4.6333 7.5213 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348805195.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:34 Heat of formation + Delta-G solvation = -186.253206 kcal Electronic energy + Delta-G solvation = -31463.173852 eV Core-core repulsion = 27196.301954 eV Total energy + Delta-G solvation = -4266.871898 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.44701 -41.04889 -40.09653 -38.19833 -37.36765 -36.65971 -36.27542 -33.46975 -32.77674 -30.75806 -29.76619 -29.48850 -28.75548 -27.66003 -26.34972 -23.85249 -22.41886 -21.72859 -21.30250 -21.01465 -20.52587 -18.96666 -18.48491 -18.22426 -18.02861 -17.35821 -17.11714 -16.93986 -16.61160 -16.11710 -16.06578 -15.76239 -15.53893 -15.12249 -14.77524 -14.37790 -14.29642 -14.26203 -14.15677 -13.89515 -13.43843 -13.25589 -13.06955 -12.93743 -12.88073 -12.76255 -12.72404 -12.53685 -12.45233 -12.13919 -12.04257 -12.01189 -11.95049 -11.77901 -11.66792 -11.60328 -11.50426 -11.27369 -10.93854 -10.64724 -10.42412 -9.94710 -9.83072 -8.35438 -5.90150 1.43441 1.53016 1.64811 1.70152 1.77496 1.81091 2.26976 2.35288 2.38324 2.87418 3.15594 3.57984 3.67601 3.83891 3.91070 4.09597 4.25158 4.28816 4.30915 4.31903 4.37329 4.45841 4.49536 4.54694 4.60910 4.63026 4.64494 4.66404 4.72387 4.75910 4.81992 4.85280 4.91821 4.98922 5.10488 5.11956 5.24552 5.29189 5.32244 5.40381 5.48548 5.50462 5.63296 5.67795 5.75637 6.35249 6.70198 7.10709 7.20932 7.41294 7.53306 7.94530 8.72363 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011441 B = 0.003541 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.688615 B = 7904.806918 C = 8953.755102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.379 6.379 3 C 0.484 3.516 4 O -0.539 6.539 5 C 0.157 3.843 6 N -0.442 5.442 7 C -0.349 4.349 8 H 0.123 0.877 9 C -0.006 4.006 10 N -0.900 5.900 11 Si 0.994 3.006 12 H -0.249 1.249 13 H -0.279 1.279 14 H -0.294 1.294 15 C 0.457 3.543 16 O -0.619 6.619 17 C -0.116 4.116 18 C 0.162 3.838 19 H 0.042 0.958 20 C -0.148 4.148 21 N -0.698 5.698 22 C 0.516 3.484 23 O -0.595 6.595 24 C -0.107 4.107 25 C -0.111 4.111 26 C -0.116 4.116 27 C -0.121 4.121 28 C -0.113 4.113 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.134 0.866 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.269 0.731 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.407 0.593 41 H 0.129 0.871 42 H 0.084 0.916 43 H 0.038 0.962 44 H 0.091 0.909 45 H 0.069 0.931 46 H 0.054 0.946 47 H 0.086 0.914 48 H 0.047 0.953 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.052 0.200 7.680 13.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.296 6.296 3 C 0.327 3.673 4 O -0.427 6.427 5 C 0.031 3.969 6 N -0.161 5.161 7 C -0.476 4.476 8 H 0.141 0.859 9 C -0.208 4.208 10 N -0.539 5.539 11 Si 0.818 3.182 12 H -0.172 1.172 13 H -0.204 1.204 14 H -0.221 1.221 15 C 0.248 3.752 16 O -0.506 6.506 17 C -0.156 4.156 18 C 0.057 3.943 19 H 0.061 0.939 20 C -0.206 4.206 21 N -0.347 5.347 22 C 0.304 3.696 23 O -0.477 6.477 24 C -0.128 4.128 25 C -0.149 4.149 26 C -0.154 4.154 27 C -0.159 4.159 28 C -0.151 4.151 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.153 0.847 32 H 0.137 0.863 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.117 0.883 36 H 0.135 0.865 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.243 0.757 41 H 0.147 0.853 42 H 0.103 0.897 43 H 0.057 0.943 44 H 0.109 0.891 45 H 0.088 0.912 46 H 0.073 0.927 47 H 0.105 0.895 48 H 0.066 0.934 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.907 0.472 8.412 13.006 hybrid contribution -0.728 -0.103 -1.413 1.593 sum 9.179 0.369 7.000 11.549 Atomic orbital electron populations 1.23274 0.76345 1.04831 1.01049 1.86427 1.24022 1.34037 1.85073 1.24257 0.92902 0.80669 0.69452 1.90481 1.67439 1.37753 1.47046 1.20470 0.86617 0.86377 1.03462 1.43681 1.57472 1.08158 1.06780 1.20135 1.34491 1.10709 0.82276 0.85911 1.26106 0.95040 0.97036 1.02615 1.69976 1.23693 1.31920 1.28298 0.84860 0.78188 0.78371 0.76781 1.17187 1.20426 1.22092 1.20926 0.81475 0.89741 0.83034 1.90566 1.55981 1.71285 1.32745 1.21715 1.04850 0.92255 0.96818 1.20541 0.91740 0.92395 0.89666 0.93947 1.22061 1.03506 0.93054 1.02004 1.45774 1.26039 1.56356 1.06564 1.21093 0.86997 0.78723 0.82748 1.90613 1.34991 1.50491 1.71568 1.22285 0.98381 0.96673 0.95477 1.22490 1.00561 0.92166 0.99681 1.22353 1.01110 0.99157 0.92733 1.22143 1.00847 0.94409 0.98468 1.22053 1.01383 0.98778 0.92868 0.93404 0.93608 0.84748 0.86282 0.89421 0.92087 0.88340 0.86511 0.89856 0.90767 0.93286 0.75731 0.85312 0.89690 0.94306 0.89081 0.91244 0.92715 0.89534 0.93386 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.35 10.56 113.37 1.20 2.55 16 2 O -0.38 -16.61 10.57 -51.48 -0.54 -17.15 16 3 C 0.48 24.51 6.13 71.24 0.44 24.95 16 4 O -0.54 -30.96 15.76 21.96 0.35 -30.61 16 5 C 0.16 7.45 5.14 85.63 0.44 7.89 16 6 N -0.44 -21.05 2.18 -639.61 -1.39 -22.45 16 7 C -0.35 -16.18 9.14 84.04 0.77 -15.42 16 8 H 0.12 5.07 6.56 -2.91 -0.02 5.05 16 9 C -0.01 -0.30 4.88 84.93 0.41 0.11 16 10 N -0.90 -45.84 9.27 21.66 0.20 -45.63 16 11 Si 0.99 36.92 29.60 68.60 2.03 38.95 16 12 H -0.25 -8.40 7.11 99.48 0.71 -7.70 16 13 H -0.28 -10.25 7.11 99.48 0.71 -9.54 16 14 H -0.29 -11.43 7.11 99.48 0.71 -10.72 16 15 C 0.46 20.84 7.28 87.66 0.64 21.48 16 16 O -0.62 -31.52 15.04 -3.06 -0.05 -31.57 16 17 C -0.12 -4.10 3.69 29.85 0.11 -3.99 16 18 C 0.16 5.53 2.13 45.00 0.10 5.63 16 19 H 0.04 1.87 7.39 -2.38 -0.02 1.85 16 20 C -0.15 -3.91 9.48 71.98 0.68 -3.23 16 21 N -0.70 -21.58 4.21 -442.53 -1.86 -23.44 16 22 C 0.52 17.26 7.10 87.66 0.62 17.88 16 23 O -0.60 -25.24 15.09 -3.05 -0.05 -25.29 16 24 C -0.11 -2.59 3.25 -10.34 -0.03 -2.62 16 25 C -0.11 -2.64 6.34 32.01 0.20 -2.44 16 26 C -0.12 -2.08 6.82 31.67 0.22 -1.86 16 27 C -0.12 -2.29 6.80 31.32 0.21 -2.08 16 28 C -0.11 -2.69 6.18 31.32 0.19 -2.50 16 29 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 30 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 31 H 0.13 3.34 8.14 -2.38 -0.02 3.32 16 32 H 0.12 5.62 6.38 -2.39 -0.02 5.61 16 33 H 0.09 3.92 7.61 -2.38 -0.02 3.91 16 34 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 35 H 0.10 3.54 8.10 -2.39 -0.02 3.52 16 36 H 0.12 3.35 7.69 -2.39 -0.02 3.34 16 37 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 38 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.41 10.45 8.60 -92.70 -0.80 9.65 16 41 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.04 1.23 8.06 -2.39 -0.02 1.21 16 44 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.05 1.49 6.85 -2.39 -0.02 1.48 16 49 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -74.00 399.34 5.04 -68.96 By element: Atomic # 1 Polarization: 41.71 SS G_CDS: 0.16 Total: 41.87 kcal Atomic # 6 Polarization: 40.16 SS G_CDS: 6.20 Total: 46.35 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -3.06 Total: -91.52 kcal Atomic # 8 Polarization: -104.33 SS G_CDS: -0.29 Total: -104.62 kcal Atomic # 14 Polarization: 36.92 SS G_CDS: 2.03 Total: 38.95 kcal Total: -74.00 5.04 -68.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348805195.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.289 kcal (2) G-P(sol) polarization free energy of solvation -74.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds