Wall clock time and date at job start Wed Apr 1 2020 00:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46506 * 109.46883 * 2 1 4 4 C 1.46492 * 120.00194 * 95.20526 * 3 2 1 5 5 C 1.50700 * 109.47235 * 269.72392 * 4 3 2 6 6 H 1.08005 * 119.99895 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00181 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00013 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99938 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47121 * 59.99804 * 9 7 5 11 11 H 1.48493 * 109.46868 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46803 * 299.99915 * 9 7 5 13 13 C 1.34781 * 119.99803 * 274.92421 * 3 2 1 14 14 O 1.21281 * 119.99930 * 175.57488 * 13 3 2 15 15 C 1.50698 * 119.99863 * 355.58346 * 13 3 2 16 16 H 1.08997 * 109.82647 * 50.61693 * 15 13 3 17 17 C 1.54384 * 109.83271 * 289.72965 * 15 13 3 18 18 C 1.55452 * 102.18493 * 219.18736 * 17 15 13 19 19 C 1.54942 * 100.99080 * 34.03463 * 18 17 15 20 20 H 1.09002 * 110.30848 * 82.52790 * 19 18 17 21 21 C 1.50702 * 110.39445 * 204.64730 * 19 18 17 22 22 O 1.21276 * 119.99996 * 104.85446 * 21 19 18 23 23 N 1.34777 * 120.00040 * 284.85726 * 21 19 18 24 24 C 1.47157 * 120.98229 * 4.50175 * 23 21 19 25 25 C 1.53715 * 108.16101 * 129.43183 * 24 23 21 26 26 O 1.42966 * 109.14504 * 52.53961 * 25 24 23 27 27 C 1.42958 * 114.16502 * 297.28665 * 26 25 24 28 28 C 1.47152 * 120.98314 * 184.78682 * 23 21 19 29 29 O 1.43243 * 109.82989 * 171.50210 * 15 13 3 30 30 H 1.09002 * 109.47142 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47604 * 300.00121 * 1 2 3 32 32 H 1.08999 * 109.47187 * 60.00052 * 1 2 3 33 33 H 1.08998 * 109.47158 * 239.99900 * 2 1 3 34 34 H 1.08999 * 109.47187 * 119.99948 * 2 1 3 35 35 H 1.09001 * 109.47460 * 29.72291 * 4 3 2 36 36 H 1.09000 * 109.47549 * 149.72484 * 4 3 2 37 37 H 0.97001 * 119.99945 * 180.02562 * 8 7 5 38 38 H 1.09006 * 110.84393 * 337.32060 * 17 15 13 39 39 H 1.08995 * 110.84783 * 100.93958 * 17 15 13 40 40 H 1.09004 * 111.05514 * 276.11786 * 18 17 15 41 41 H 1.09000 * 111.14261 * 151.99473 * 18 17 15 42 42 H 1.08994 * 109.68077 * 249.21252 * 24 23 21 43 43 H 1.09000 * 109.67766 * 9.76695 * 24 23 21 44 44 H 1.08999 * 109.66014 * 292.57547 * 25 24 23 45 45 H 1.08996 * 109.44337 * 172.37515 * 25 24 23 46 46 H 1.09000 * 109.51870 * 302.65400 * 27 26 25 47 47 H 1.09007 * 109.55499 * 182.53374 * 27 26 25 48 48 H 1.09004 * 109.67855 * 350.22956 * 28 23 21 49 49 H 1.09000 * 109.68161 * 110.75021 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3709 2.0335 1.2634 5 6 1.1595 2.7345 1.8221 6 1 0.2206 2.6974 1.2896 7 6 1.2494 3.4223 3.0137 8 7 2.3925 3.4670 3.6625 9 14 -0.2525 4.2905 3.7067 10 1 -1.3314 3.2986 3.9454 11 1 0.1051 4.9518 4.9873 12 1 -0.7247 5.3119 2.7376 13 6 2.1484 2.0500 -1.1630 14 8 2.4754 3.2179 -1.1576 15 6 1.8873 1.3466 -2.4699 16 1 0.9233 0.8394 -2.4306 17 6 3.0077 0.3210 -2.7457 18 6 3.2236 0.4748 -4.2775 19 6 2.9520 1.9889 -4.4634 20 1 3.8443 2.5659 -4.2205 21 6 2.5146 2.2742 -5.8771 22 8 1.3491 2.5104 -6.1152 23 7 3.4185 2.2668 -6.8767 24 6 4.8186 1.8871 -6.6292 25 6 5.2172 0.8243 -7.6657 26 8 4.9137 1.3099 -8.9757 27 6 3.5229 1.5496 -9.2033 28 6 3.0361 2.6441 -8.2467 29 8 1.8934 2.2961 -3.5424 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.7173 1.2841 1.9750 36 1 3.1630 2.7614 1.0879 37 1 2.4556 3.9506 4.5010 38 1 3.9142 0.5803 -2.1985 39 1 2.6792 -0.6884 -2.4982 40 1 2.5051 -0.1248 -4.8364 41 1 4.2460 0.2217 -4.5578 42 1 5.4599 2.7625 -6.7315 43 1 4.9152 1.4760 -5.6243 44 1 4.6618 -0.0950 -7.4805 45 1 6.2863 0.6263 -7.5895 46 1 2.9612 0.6329 -9.0237 47 1 3.3721 1.8729 -10.2333 48 1 1.9519 2.7344 -8.3134 49 1 3.5006 3.5947 -8.5088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354513973.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:25 Heat of formation + Delta-G solvation = -168.918137 kcal Electronic energy + Delta-G solvation = -31124.904596 eV Core-core repulsion = 26858.784403 eV Total energy + Delta-G solvation = -4266.120193 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.03708 -41.05556 -39.68346 -38.80594 -37.00600 -35.96353 -34.92848 -33.42916 -32.66737 -31.71916 -31.19186 -29.32928 -28.62038 -26.17660 -25.03604 -24.43042 -24.12555 -22.94277 -22.84108 -20.44206 -20.11533 -19.16901 -18.69851 -18.04265 -17.83412 -17.50037 -17.06942 -16.77789 -16.64775 -16.51060 -16.19613 -16.00655 -15.71760 -15.52549 -15.16626 -14.82198 -14.48300 -14.41468 -14.24162 -14.15432 -13.85565 -13.54795 -13.32635 -13.22149 -13.11128 -12.96954 -12.82997 -12.75301 -12.67676 -12.54917 -12.36572 -12.25578 -12.04530 -11.74200 -11.70617 -11.58650 -11.50004 -11.23476 -10.80844 -10.63947 -10.23737 -9.70846 -9.47303 -8.23135 -6.35547 1.26773 1.32916 1.37522 1.44076 1.52544 1.72371 2.19663 2.37993 2.80581 2.88294 3.06383 3.12448 3.32529 3.58308 3.71012 3.74705 3.86047 3.94333 4.07904 4.08619 4.09753 4.15731 4.25849 4.28552 4.41836 4.44951 4.55649 4.59566 4.61976 4.70352 4.76653 4.80566 4.85443 4.91459 4.94497 4.98614 5.03914 5.05729 5.20702 5.27250 5.47809 5.58716 5.69162 5.87091 6.07582 6.10907 6.12508 6.69567 6.76730 6.93180 7.27762 7.45230 8.83689 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022696 B = 0.002454 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.423905 B =11408.397855 C =11628.387187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.097 3.903 3 N -0.596 5.596 4 C 0.262 3.738 5 C -0.537 4.537 6 H 0.048 0.952 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.959 3.041 10 H -0.260 1.260 11 H -0.275 1.275 12 H -0.284 1.284 13 C 0.485 3.515 14 O -0.591 6.591 15 C 0.066 3.934 16 H 0.119 0.881 17 C -0.133 4.133 18 C -0.126 4.126 19 C 0.050 3.950 20 H 0.100 0.900 21 C 0.520 3.480 22 O -0.569 6.569 23 N -0.611 5.611 24 C 0.058 3.942 25 C 0.047 3.953 26 O -0.394 6.394 27 C 0.057 3.943 28 C 0.072 3.928 29 O -0.367 6.367 30 H 0.099 0.901 31 H 0.036 0.964 32 H 0.045 0.955 33 H 0.111 0.889 34 H 0.086 0.914 35 H 0.032 0.968 36 H -0.005 1.005 37 H 0.267 0.733 38 H 0.086 0.914 39 H 0.139 0.861 40 H 0.099 0.901 41 H 0.138 0.862 42 H 0.086 0.914 43 H 0.115 0.885 44 H 0.069 0.931 45 H 0.134 0.866 46 H 0.059 0.941 47 H 0.126 0.874 48 H 0.086 0.914 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.236 -15.544 -24.205 29.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.024 4.024 3 N -0.329 5.329 4 C 0.141 3.859 5 C -0.575 4.575 6 H 0.066 0.934 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.784 3.216 10 H -0.184 1.184 11 H -0.200 1.200 12 H -0.210 1.210 13 C 0.273 3.727 14 O -0.471 6.471 15 C 0.005 3.995 16 H 0.136 0.864 17 C -0.171 4.171 18 C -0.163 4.163 19 C -0.010 4.010 20 H 0.118 0.882 21 C 0.308 3.692 22 O -0.447 6.447 23 N -0.346 5.346 24 C -0.064 4.064 25 C -0.030 4.030 26 O -0.312 6.312 27 C -0.021 4.021 28 C -0.051 4.051 29 O -0.284 6.284 30 H 0.117 0.883 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.129 0.871 34 H 0.104 0.896 35 H 0.050 0.950 36 H 0.013 0.987 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.157 0.843 40 H 0.117 0.883 41 H 0.156 0.844 42 H 0.105 0.895 43 H 0.133 0.867 44 H 0.087 0.913 45 H 0.151 0.849 46 H 0.077 0.923 47 H 0.144 0.856 48 H 0.104 0.896 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.868 -14.558 -24.306 29.153 hybrid contribution -1.036 1.386 1.221 2.118 sum 5.831 -13.172 -23.085 27.211 Atomic orbital electron populations 1.22224 0.96004 1.03194 1.01297 1.21946 0.94867 0.80926 1.04679 1.48243 1.63327 1.15156 1.06128 1.18773 0.94637 0.92196 0.80316 1.21667 0.96863 1.32979 1.06013 0.93358 1.25769 0.99133 0.96836 0.97239 1.70017 1.26274 1.43456 1.16925 0.85598 0.79730 0.78852 0.77429 1.18422 1.20031 1.21031 1.21601 0.77416 0.86899 0.86810 1.90647 1.49660 1.18793 1.88004 1.22924 1.03398 0.89342 0.83822 0.86357 1.23270 0.97221 1.00155 0.96434 1.23421 1.06418 0.90698 0.95777 1.23142 0.91165 1.00065 0.86660 0.88227 1.20708 0.85234 0.76140 0.87114 1.90689 1.19769 1.49847 1.84397 1.48137 1.10631 1.67451 1.08417 1.23018 0.80221 1.00690 1.02433 1.23265 1.03767 0.94850 0.81088 1.87966 1.24676 1.86220 1.32368 1.22999 0.82033 0.96940 1.00093 1.22434 1.02312 0.99619 0.80700 1.88610 1.52336 1.53078 1.34391 0.88279 0.94428 0.93604 0.87093 0.89560 0.95012 0.98680 0.92428 0.89506 0.84314 0.88262 0.84430 0.89536 0.86720 0.91311 0.84853 0.92279 0.85620 0.89600 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.77 10.09 71.98 0.73 -4.05 16 2 C 0.10 2.77 5.82 86.38 0.50 3.27 16 3 N -0.60 -25.04 2.47 -826.17 -2.04 -27.08 16 4 C 0.26 14.13 5.17 85.63 0.44 14.57 16 5 C -0.54 -31.62 9.20 25.60 0.24 -31.39 16 6 H 0.05 2.87 7.44 -2.91 -0.02 2.85 16 7 C 0.01 0.54 5.46 84.65 0.46 1.00 16 8 N -0.93 -56.59 13.29 21.45 0.28 -56.31 16 9 Si 0.96 46.44 29.54 68.60 2.03 48.47 16 10 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.28 -14.07 7.11 99.48 0.71 -13.37 16 13 C 0.48 21.16 6.84 87.66 0.60 21.76 16 14 O -0.59 -33.32 16.17 15.63 0.25 -33.07 16 15 C 0.07 2.05 3.08 30.32 0.09 2.14 16 16 H 0.12 3.28 6.38 -2.39 -0.02 3.26 16 17 C -0.13 -2.35 5.55 31.91 0.18 -2.17 16 18 C -0.13 -1.74 6.02 32.10 0.19 -1.54 16 19 C 0.05 1.27 2.89 30.51 0.09 1.36 16 20 H 0.10 2.39 7.57 -2.39 -0.02 2.37 16 21 C 0.52 13.93 7.06 87.66 0.62 14.54 16 22 O -0.57 -20.84 16.05 15.23 0.24 -20.60 16 23 N -0.61 -11.25 3.01 -816.52 -2.46 -13.71 16 24 C 0.06 0.60 6.33 86.49 0.55 1.15 16 25 C 0.05 0.35 7.00 72.22 0.51 0.86 16 26 O -0.39 -5.00 10.74 -148.98 -1.60 -6.60 16 27 C 0.06 0.64 6.98 72.08 0.50 1.15 16 28 C 0.07 1.17 6.65 86.35 0.57 1.75 16 29 O -0.37 -13.59 9.85 -121.19 -1.19 -14.79 16 30 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.04 1.34 7.58 -2.39 -0.02 1.32 16 32 H 0.04 1.32 6.89 -2.39 -0.02 1.30 16 33 H 0.11 2.06 4.72 -2.39 -0.01 2.05 16 34 H 0.09 2.36 7.83 -2.39 -0.02 2.34 16 35 H 0.03 1.70 7.85 -2.39 -0.02 1.68 16 36 H 0.00 -0.31 7.49 -2.39 -0.02 -0.32 16 37 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 38 H 0.09 1.64 7.84 -2.38 -0.02 1.62 16 39 H 0.14 1.34 6.75 -2.39 -0.02 1.33 16 40 H 0.10 1.22 8.05 -2.38 -0.02 1.20 16 41 H 0.14 0.71 6.51 -2.39 -0.02 0.70 16 42 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.11 0.79 4.27 -2.39 -0.01 0.78 16 44 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 46 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.13 0.93 8.14 -2.38 -0.02 0.91 16 48 H 0.09 1.72 7.07 -2.38 -0.02 1.71 16 49 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -93.49 386.08 2.75 -90.75 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 0.96 Total: 8.52 kcal Atomic # 6 Polarization: 18.14 SS G_CDS: 6.27 Total: 24.41 kcal Atomic # 7 Polarization: -92.88 SS G_CDS: -4.21 Total: -97.10 kcal Atomic # 8 Polarization: -72.75 SS G_CDS: -2.30 Total: -75.05 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -93.49 2.75 -90.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354513973.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.173 kcal (2) G-P(sol) polarization free energy of solvation -93.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds