Wall clock time and date at job start Tue Mar 31 2020 23:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47304 * 2 1 4 4 C 1.50705 * 109.47494 * 239.99711 * 2 1 3 5 5 H 1.07996 * 120.00402 * 240.00189 * 4 2 1 6 6 C 1.37877 * 119.99569 * 59.99846 * 4 2 1 7 7 N 1.31513 * 120.00213 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99635 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47226 * 60.00404 * 8 6 4 10 10 H 1.48503 * 109.47219 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47214 * 300.00060 * 8 6 4 12 12 N 1.46505 * 109.47333 * 119.99864 * 2 1 3 13 13 C 1.46498 * 119.99973 * 59.99840 * 12 2 1 14 14 C 1.34780 * 120.00009 * 240.00556 * 12 2 1 15 15 O 1.21278 * 119.99861 * 359.97438 * 14 12 2 16 16 C 1.50700 * 119.99628 * 179.97438 * 14 12 2 17 17 H 1.08994 * 109.89572 * 55.93327 * 16 14 12 18 18 C 1.54377 * 109.83208 * 294.99280 * 16 14 12 19 19 C 1.55303 * 102.25541 * 219.12951 * 18 16 14 20 20 C 1.54952 * 100.93753 * 34.14067 * 19 18 16 21 21 H 1.08995 * 110.31342 * 82.56891 * 20 19 18 22 22 C 1.50703 * 110.30502 * 204.63768 * 20 19 18 23 23 O 1.21282 * 120.00130 * 112.28466 * 22 20 19 24 24 N 1.34772 * 119.99971 * 292.28786 * 22 20 19 25 25 C 1.47150 * 120.98266 * 354.94589 * 24 22 20 26 26 C 1.53299 * 108.38252 * 230.51414 * 25 24 22 27 27 O 1.42956 * 109.22580 * 307.69706 * 26 25 24 28 28 C 1.42965 * 114.16439 * 62.58163 * 27 26 25 29 29 C 1.47160 * 120.98253 * 174.92672 * 24 22 20 30 30 O 1.43243 * 109.82712 * 176.86191 * 16 14 12 31 31 H 1.08997 * 109.46801 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47409 * 300.00192 * 1 2 3 33 33 H 1.09002 * 109.46628 * 60.00178 * 1 2 3 34 34 H 0.97000 * 119.99644 * 180.02562 * 7 6 4 35 35 H 1.09006 * 109.46970 * 270.00314 * 13 12 2 36 36 H 1.08999 * 109.47066 * 29.99859 * 13 12 2 37 37 H 1.08995 * 109.47011 * 150.00428 * 13 12 2 38 38 H 1.09010 * 110.84554 * 100.94049 * 18 16 14 39 39 H 1.08999 * 110.85009 * 337.32574 * 18 16 14 40 40 H 1.08990 * 111.12948 * 276.21795 * 19 18 16 41 41 H 1.09002 * 111.15740 * 152.06426 * 19 18 16 42 42 H 1.08999 * 109.68199 * 350.23695 * 25 24 22 43 43 H 1.09000 * 109.68234 * 110.79562 * 25 24 22 44 44 H 1.09000 * 109.51367 * 67.62710 * 26 25 24 45 45 H 1.09002 * 109.51232 * 187.77249 * 26 25 24 46 46 H 1.09004 * 109.51249 * 177.49443 * 28 27 26 47 47 H 1.08996 * 109.55557 * 57.37052 * 28 27 26 48 48 H 1.08995 * 109.68078 * 249.21284 * 29 24 22 49 49 H 1.09000 * 109.67681 * 9.72356 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.8259 -2.5203 -4.0076 10 1 1.8271 -0.4201 -5.2204 11 1 3.8065 -1.1210 -4.0080 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0931 1.4281 14 6 2.7932 -0.0355 2.0834 15 8 3.0864 1.1255 1.8912 16 6 3.2950 -0.7458 3.3141 17 1 3.8411 -1.6443 3.0271 18 6 2.1054 -1.1236 4.2225 19 6 2.6742 -0.8499 5.6415 20 6 3.5891 0.3689 5.3615 21 1 3.0034 1.2881 5.3555 22 6 4.6809 0.4521 6.3969 23 8 5.8346 0.2554 6.0788 24 7 4.3753 0.7449 7.6764 25 6 3.0001 1.0954 8.0656 26 6 3.0436 2.3961 8.8758 27 8 3.9885 2.2568 9.9395 28 6 5.3330 2.0421 9.5036 29 6 5.4069 0.7233 8.7257 30 8 4.1515 0.1251 4.0624 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 0.7090 1.1612 -3.4845 35 1 0.7375 -2.1443 1.9995 36 1 1.5295 -2.5968 0.4709 37 1 2.4629 -2.5818 1.9865 38 1 1.8462 -2.1759 4.1048 39 1 1.2448 -0.4861 4.0199 40 1 3.2521 -1.7000 6.0038 41 1 1.8791 -0.5917 6.3410 42 1 2.3913 1.2390 7.1730 43 1 2.5764 0.2973 8.6752 44 1 3.3440 3.2191 8.2273 45 1 2.0563 2.6000 9.2902 46 1 5.9928 1.9913 10.3697 47 1 5.6427 2.8636 8.8577 48 1 5.2255 -0.1124 9.4016 49 1 6.3917 0.6198 8.2701 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354666462.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:07 Heat of formation + Delta-G solvation = -138.914915 kcal Electronic energy + Delta-G solvation = -31030.556506 eV Core-core repulsion = 26765.737350 eV Total energy + Delta-G solvation = -4264.819156 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.02246 -39.90666 -38.65653 -37.66003 -35.31225 -35.16115 -33.07919 -32.41396 -31.88601 -30.55937 -29.08863 -28.00852 -26.21014 -25.25756 -24.95680 -24.19040 -22.53955 -21.95567 -20.92777 -19.63361 -18.51367 -18.17253 -17.01621 -16.91443 -16.48671 -16.45050 -16.14987 -15.75521 -15.52476 -15.30224 -15.21160 -14.90411 -14.48393 -14.40052 -13.93357 -13.52044 -13.31583 -13.09377 -13.00284 -12.61921 -12.44972 -12.26740 -12.22424 -12.06523 -11.84782 -11.70644 -11.54598 -11.47040 -11.21810 -11.15402 -11.05830 -10.85218 -10.71651 -10.61248 -10.36354 -10.26726 -10.17556 -9.72197 -9.19740 -8.97439 -8.68945 -8.41565 -7.62100 -6.07944 -4.15994 2.26682 2.35760 3.22234 3.28073 3.33298 3.33766 3.36172 3.53298 3.92626 4.08342 4.22321 4.25217 4.39697 4.47937 4.58613 4.62679 4.69296 4.77042 4.85887 4.89874 4.97024 5.07719 5.14707 5.22949 5.23849 5.31707 5.32545 5.35055 5.45125 5.48051 5.59806 5.68834 5.86877 5.95157 5.97247 6.32031 6.60327 6.67516 6.73258 6.80959 6.96632 7.04386 7.40478 7.51633 7.70073 7.87657 8.00397 8.18422 8.49054 8.82262 9.03327 9.50439 10.97392 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026640 B = 0.002317 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.780988 B =12080.231473 C =12225.656999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.590 5.590 13 C 0.081 3.919 14 C 0.492 3.508 15 O -0.534 6.534 16 C 0.062 3.938 17 H 0.105 0.895 18 C -0.141 4.141 19 C -0.143 4.143 20 C 0.063 3.937 21 H 0.097 0.903 22 C 0.522 3.478 23 O -0.512 6.512 24 N -0.618 5.618 25 C 0.069 3.931 26 C 0.045 3.955 27 O -0.380 6.380 28 C 0.047 3.953 29 C 0.078 3.922 30 O -0.320 6.320 31 H 0.029 0.971 32 H 0.010 0.990 33 H 0.093 0.907 34 H 0.264 0.736 35 H 0.044 0.956 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.059 0.941 45 H 0.109 0.891 46 H 0.107 0.893 47 H 0.058 0.942 48 H 0.077 0.923 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.091 -3.513 25.290 25.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.323 5.323 13 C -0.063 4.063 14 C 0.278 3.722 15 O -0.411 6.411 16 C 0.001 3.999 17 H 0.123 0.877 18 C -0.178 4.178 19 C -0.181 4.181 20 C 0.002 3.998 21 H 0.115 0.885 22 C 0.309 3.691 23 O -0.386 6.386 24 N -0.356 5.356 25 C -0.054 4.054 26 C -0.032 4.032 27 O -0.298 6.298 28 C -0.030 4.030 29 C -0.044 4.044 30 O -0.237 6.237 31 H 0.049 0.951 32 H 0.029 0.971 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.071 0.929 38 H 0.116 0.884 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.127 0.873 46 H 0.125 0.875 47 H 0.076 0.924 48 H 0.095 0.905 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.766 -2.782 24.922 25.089 hybrid contribution 0.106 -0.674 -1.154 1.341 sum 0.871 -3.457 23.768 24.034 Atomic orbital electron populations 1.22074 0.98122 0.99365 1.00759 1.18947 0.90842 0.94566 0.79825 0.91940 1.21277 1.31901 1.13078 0.90293 0.92261 1.24891 0.94920 0.94975 0.98975 1.69866 1.36295 1.22543 1.23888 0.86545 0.79314 0.79517 0.81951 1.20231 1.21166 1.20210 1.48218 1.49091 1.11559 1.23455 1.21697 0.98612 0.83418 1.02611 1.20545 0.79691 0.87552 0.84452 1.90671 1.57230 1.16933 1.76241 1.22796 0.91944 0.93232 0.91922 0.87742 1.23150 0.98073 1.04024 0.92600 1.23299 0.98978 0.97510 0.98319 1.22822 0.92365 1.00002 0.84657 0.88528 1.20536 0.90147 0.76222 0.82180 1.90729 1.20773 1.47752 1.79304 1.48048 1.09801 1.70403 1.07384 1.22573 0.83381 0.98441 1.00995 1.23016 0.94279 0.95945 0.89993 1.87970 1.17064 1.92925 1.31812 1.23006 0.84194 0.96090 0.99726 1.22288 0.93844 0.98564 0.89742 1.88660 1.44109 1.67851 1.23081 0.95140 0.97113 0.88821 0.92611 0.93713 0.89921 0.92933 0.88444 0.89343 0.89549 0.88828 0.88479 0.90002 0.92246 0.87281 0.87475 0.92372 0.90512 0.87908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.97 37.16 0.33 -3.05 16 2 C 0.26 6.56 2.64 -69.08 -0.18 6.38 16 3 H 0.06 1.87 6.90 -51.92 -0.36 1.51 16 4 C -0.53 -14.21 7.99 -34.44 -0.28 -14.48 16 5 H 0.06 1.57 7.33 -52.49 -0.38 1.18 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.12 11.32 55.43 0.63 -24.49 16 8 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.59 -12.35 2.75 -175.25 -0.48 -12.83 16 13 C 0.08 1.27 8.07 59.85 0.48 1.75 16 14 C 0.49 10.41 6.95 -10.98 -0.08 10.34 16 15 O -0.53 -13.90 15.85 -14.10 -0.22 -14.12 16 16 C 0.06 0.99 3.08 -27.16 -0.08 0.91 16 17 H 0.11 1.52 7.20 -51.93 -0.37 1.15 16 18 C -0.14 -1.52 5.29 -24.79 -0.13 -1.65 16 19 C -0.14 -1.28 5.95 -24.48 -0.15 -1.43 16 20 C 0.06 0.81 2.91 -26.85 -0.08 0.73 16 21 H 0.10 1.14 7.17 -51.93 -0.37 0.77 16 22 C 0.52 6.94 7.08 -10.99 -0.08 6.86 16 23 O -0.51 -9.04 16.02 -13.77 -0.22 -9.26 16 24 N -0.62 -5.87 3.02 -172.28 -0.52 -6.39 16 25 C 0.07 0.44 5.71 -3.53 -0.02 0.41 16 26 C 0.05 0.28 6.98 37.31 0.26 0.54 16 27 O -0.38 -3.06 10.74 -35.23 -0.38 -3.44 16 28 C 0.05 0.33 6.98 37.31 0.26 0.59 16 29 C 0.08 0.64 6.65 -3.53 -0.02 0.62 16 30 O -0.32 -5.77 9.81 -64.43 -0.63 -6.40 16 31 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 32 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.04 0.59 8.00 -51.93 -0.42 0.18 16 36 H 0.08 1.41 7.02 -51.93 -0.36 1.05 16 37 H 0.05 0.66 5.97 -51.93 -0.31 0.35 16 38 H 0.10 0.81 7.44 -51.92 -0.39 0.43 16 39 H 0.09 1.00 7.84 -51.93 -0.41 0.60 16 40 H 0.09 0.74 8.05 -51.93 -0.42 0.33 16 41 H 0.09 0.54 6.97 -51.93 -0.36 0.18 16 42 H 0.10 0.52 5.15 -51.93 -0.27 0.25 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.10 0.98 7.06 -51.93 -0.37 0.61 16 LS Contribution 382.09 15.07 5.76 5.76 Total: -1.00 -36.98 382.09 -8.54 -45.52 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -7.59 Total: -0.61 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 0.15 Total: 10.19 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: -0.38 Total: -43.71 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -1.45 Total: -33.22 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.98 -8.54 -45.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354666462.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.400 kcal (2) G-P(sol) polarization free energy of solvation -36.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds