Wall clock time and date at job start Tue Mar 31 2020 23:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47304 * 2 1 4 4 C 1.50705 * 109.47494 * 239.99711 * 2 1 3 5 5 H 1.07996 * 120.00402 * 240.00189 * 4 2 1 6 6 C 1.37877 * 119.99569 * 59.99846 * 4 2 1 7 7 N 1.31513 * 120.00213 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99635 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47226 * 60.00404 * 8 6 4 10 10 H 1.48503 * 109.47219 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47214 * 300.00060 * 8 6 4 12 12 N 1.46505 * 109.47333 * 119.99864 * 2 1 3 13 13 C 1.46498 * 119.99973 * 59.99840 * 12 2 1 14 14 C 1.34780 * 120.00009 * 240.00556 * 12 2 1 15 15 O 1.21278 * 119.99861 * 359.97438 * 14 12 2 16 16 C 1.50700 * 119.99628 * 179.97438 * 14 12 2 17 17 H 1.08994 * 109.89572 * 55.93327 * 16 14 12 18 18 C 1.54377 * 109.83208 * 294.99280 * 16 14 12 19 19 C 1.55303 * 102.25541 * 219.12951 * 18 16 14 20 20 C 1.54952 * 100.93753 * 34.14067 * 19 18 16 21 21 H 1.08995 * 110.31342 * 82.56891 * 20 19 18 22 22 C 1.50703 * 110.30502 * 204.63768 * 20 19 18 23 23 O 1.21282 * 120.00130 * 112.28466 * 22 20 19 24 24 N 1.34772 * 119.99971 * 292.28786 * 22 20 19 25 25 C 1.47150 * 120.98266 * 354.94589 * 24 22 20 26 26 C 1.53299 * 108.38252 * 230.51414 * 25 24 22 27 27 O 1.42956 * 109.22580 * 307.69706 * 26 25 24 28 28 C 1.42965 * 114.16439 * 62.58163 * 27 26 25 29 29 C 1.47160 * 120.98253 * 174.92672 * 24 22 20 30 30 O 1.43243 * 109.82712 * 176.86191 * 16 14 12 31 31 H 1.08997 * 109.46801 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47409 * 300.00192 * 1 2 3 33 33 H 1.09002 * 109.46628 * 60.00178 * 1 2 3 34 34 H 0.97000 * 119.99644 * 180.02562 * 7 6 4 35 35 H 1.09006 * 109.46970 * 270.00314 * 13 12 2 36 36 H 1.08999 * 109.47066 * 29.99859 * 13 12 2 37 37 H 1.08995 * 109.47011 * 150.00428 * 13 12 2 38 38 H 1.09010 * 110.84554 * 100.94049 * 18 16 14 39 39 H 1.08999 * 110.85009 * 337.32574 * 18 16 14 40 40 H 1.08990 * 111.12948 * 276.21795 * 19 18 16 41 41 H 1.09002 * 111.15740 * 152.06426 * 19 18 16 42 42 H 1.08999 * 109.68199 * 350.23695 * 25 24 22 43 43 H 1.09000 * 109.68234 * 110.79562 * 25 24 22 44 44 H 1.09000 * 109.51367 * 67.62710 * 26 25 24 45 45 H 1.09002 * 109.51232 * 187.77249 * 26 25 24 46 46 H 1.09004 * 109.51249 * 177.49443 * 28 27 26 47 47 H 1.08996 * 109.55557 * 57.37052 * 28 27 26 48 48 H 1.08995 * 109.68078 * 249.21284 * 29 24 22 49 49 H 1.09000 * 109.67681 * 9.72356 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.8259 -2.5203 -4.0076 10 1 1.8271 -0.4201 -5.2204 11 1 3.8065 -1.1210 -4.0080 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0931 1.4281 14 6 2.7932 -0.0355 2.0834 15 8 3.0864 1.1255 1.8912 16 6 3.2950 -0.7458 3.3141 17 1 3.8411 -1.6443 3.0271 18 6 2.1054 -1.1236 4.2225 19 6 2.6742 -0.8499 5.6415 20 6 3.5891 0.3689 5.3615 21 1 3.0034 1.2881 5.3555 22 6 4.6809 0.4521 6.3969 23 8 5.8346 0.2554 6.0788 24 7 4.3753 0.7449 7.6764 25 6 3.0001 1.0954 8.0656 26 6 3.0436 2.3961 8.8758 27 8 3.9885 2.2568 9.9395 28 6 5.3330 2.0421 9.5036 29 6 5.4069 0.7233 8.7257 30 8 4.1515 0.1251 4.0624 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 0.7090 1.1612 -3.4845 35 1 0.7375 -2.1443 1.9995 36 1 1.5295 -2.5968 0.4709 37 1 2.4629 -2.5818 1.9865 38 1 1.8462 -2.1759 4.1048 39 1 1.2448 -0.4861 4.0199 40 1 3.2521 -1.7000 6.0038 41 1 1.8791 -0.5917 6.3410 42 1 2.3913 1.2390 7.1730 43 1 2.5764 0.2973 8.6752 44 1 3.3440 3.2191 8.2273 45 1 2.0563 2.6000 9.2902 46 1 5.9928 1.9913 10.3697 47 1 5.6427 2.8636 8.8577 48 1 5.2255 -0.1124 9.4016 49 1 6.3917 0.6198 8.2701 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354666462.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:06 Heat of formation + Delta-G solvation = -165.625058 kcal Electronic energy + Delta-G solvation = -31031.714745 eV Core-core repulsion = 26765.737350 eV Total energy + Delta-G solvation = -4265.977395 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.00907 -41.04783 -39.72118 -38.83568 -37.09949 -35.97170 -34.92644 -33.35995 -32.75297 -31.85707 -30.50607 -28.81040 -27.61629 -27.30238 -25.93487 -24.93376 -23.50205 -22.80595 -22.47037 -20.45751 -20.05630 -19.15720 -18.51707 -18.05147 -17.82464 -17.40112 -17.14704 -16.96608 -16.68799 -16.29841 -16.17796 -16.02947 -15.75952 -15.57134 -15.11176 -14.64505 -14.47656 -14.39181 -14.16613 -13.90884 -13.56177 -13.53308 -13.25424 -13.03407 -12.95710 -12.90233 -12.84628 -12.73338 -12.68462 -12.58857 -12.36539 -12.18257 -12.12198 -12.01114 -11.74817 -11.53797 -11.26900 -11.19700 -10.80145 -10.55168 -10.20211 -9.69892 -9.33977 -8.15458 -6.31985 1.32441 1.40085 1.43305 1.49472 1.51781 1.71932 2.19717 2.42584 2.79683 2.84978 3.12455 3.15578 3.37133 3.63457 3.71066 3.76414 3.86358 3.95709 4.08608 4.10167 4.15725 4.23289 4.27460 4.45976 4.47877 4.60806 4.62406 4.71244 4.73870 4.76884 4.78746 4.81643 4.85316 4.90871 4.91564 5.04088 5.06435 5.08485 5.27608 5.47540 5.56475 5.66395 5.74423 6.05625 6.06730 6.13395 6.16432 6.75884 6.80551 6.94782 7.30454 7.46443 8.88633 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026640 B = 0.002317 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.780988 B =12080.231473 C =12225.656999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.260 3.740 3 H 0.002 0.998 4 C -0.540 4.540 5 H 0.061 0.939 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.259 1.259 10 H -0.284 1.284 11 H -0.281 1.281 12 N -0.593 5.593 13 C 0.073 3.927 14 C 0.481 3.519 15 O -0.600 6.600 16 C 0.067 3.933 17 H 0.120 0.880 18 C -0.131 4.131 19 C -0.125 4.125 20 C 0.051 3.949 21 H 0.102 0.898 22 C 0.519 3.481 23 O -0.571 6.571 24 N -0.610 5.610 25 C 0.064 3.936 26 C 0.041 3.959 27 O -0.390 6.390 28 C 0.051 3.949 29 C 0.075 3.925 30 O -0.366 6.366 31 H 0.051 0.949 32 H 0.023 0.977 33 H 0.065 0.935 34 H 0.264 0.736 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.135 0.865 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.136 0.864 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.048 0.952 45 H 0.137 0.863 46 H 0.130 0.870 47 H 0.045 0.955 48 H 0.097 0.903 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.822 -6.307 27.685 28.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.158 3.842 3 H 0.020 0.980 4 C -0.579 4.579 5 H 0.079 0.921 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.789 3.211 9 H -0.183 1.183 10 H -0.209 1.209 11 H -0.207 1.207 12 N -0.324 5.324 13 C -0.068 4.068 14 C 0.269 3.731 15 O -0.482 6.482 16 C 0.007 3.993 17 H 0.138 0.862 18 C -0.169 4.169 19 C -0.162 4.162 20 C -0.010 4.010 21 H 0.119 0.881 22 C 0.307 3.693 23 O -0.449 6.449 24 N -0.345 5.345 25 C -0.058 4.058 26 C -0.036 4.036 27 O -0.308 6.308 28 C -0.026 4.026 29 C -0.047 4.047 30 O -0.284 6.284 31 H 0.070 0.930 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.153 0.847 39 H 0.104 0.896 40 H 0.115 0.885 41 H 0.154 0.846 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.066 0.934 45 H 0.154 0.846 46 H 0.147 0.853 47 H 0.063 0.937 48 H 0.115 0.885 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.020 -5.618 27.382 27.971 hybrid contribution 0.655 0.286 -1.827 1.962 sum -0.365 -5.332 25.555 26.108 Atomic orbital electron populations 1.21827 0.96502 1.00362 0.99985 1.18543 0.92005 0.91965 0.81652 0.98009 1.21566 1.31932 1.13143 0.91218 0.92092 1.25737 0.95091 0.95662 1.02030 1.70016 1.37291 1.23818 1.24474 0.85527 0.78208 0.79199 0.78180 1.18297 1.20893 1.20702 1.48198 1.48733 1.13543 1.21961 1.22037 1.01665 0.80088 1.03053 1.21655 0.78605 0.87053 0.85793 1.90628 1.59552 1.20088 1.77949 1.22854 0.94001 0.92158 0.90327 0.86239 1.23227 0.95548 1.06098 0.92019 1.23348 0.99037 0.95733 0.98079 1.23128 0.92863 1.02257 0.82725 0.88087 1.20710 0.89405 0.75800 0.83335 1.90698 1.22814 1.50918 1.80475 1.48135 1.11572 1.68499 1.06337 1.22893 0.81595 0.99340 1.01952 1.23194 0.95169 0.95541 0.89708 1.87961 1.17372 1.92870 1.32628 1.23030 0.84498 0.94857 1.00224 1.22414 0.92790 1.00026 0.89494 1.88622 1.45645 1.68543 1.25551 0.93009 0.95822 0.91631 0.92640 0.90158 0.91270 0.89348 0.84666 0.89636 0.88504 0.84615 0.87296 0.87272 0.93410 0.84570 0.85263 0.93653 0.88514 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.03 8.97 71.98 0.65 -5.39 16 2 C 0.26 13.64 2.64 44.24 0.12 13.76 16 3 H 0.00 0.12 6.90 -2.38 -0.02 0.11 16 4 C -0.54 -29.64 7.99 25.60 0.20 -29.43 16 5 H 0.06 3.24 7.33 -2.91 -0.02 3.21 16 6 C 0.01 0.80 5.30 84.65 0.45 1.25 16 7 N -0.92 -53.41 11.32 21.45 0.24 -53.16 16 8 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 9 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 12 N -0.59 -24.71 2.75 -826.77 -2.28 -26.98 16 13 C 0.07 2.09 8.07 127.77 1.03 3.12 16 14 C 0.48 20.72 6.95 87.66 0.61 21.33 16 15 O -0.60 -33.27 15.85 15.77 0.25 -33.02 16 16 C 0.07 2.07 3.08 30.32 0.09 2.16 16 17 H 0.12 3.24 7.20 -2.39 -0.02 3.22 16 18 C -0.13 -2.32 5.29 31.85 0.17 -2.15 16 19 C -0.12 -1.72 5.95 32.05 0.19 -1.53 16 20 C 0.05 1.26 2.91 30.52 0.09 1.34 16 21 H 0.10 2.32 7.17 -2.39 -0.02 2.30 16 22 C 0.52 13.67 7.08 87.66 0.62 14.29 16 23 O -0.57 -20.98 16.02 15.44 0.25 -20.73 16 24 N -0.61 -10.65 3.02 -817.35 -2.47 -13.12 16 25 C 0.06 0.60 5.71 86.36 0.49 1.09 16 26 C 0.04 0.41 6.98 72.08 0.50 0.91 16 27 O -0.39 -5.42 10.74 -148.98 -1.60 -7.02 16 28 C 0.05 0.66 6.98 72.08 0.50 1.16 16 29 C 0.07 1.15 6.65 86.35 0.57 1.72 16 30 O -0.37 -13.38 9.81 -121.06 -1.19 -14.57 16 31 H 0.05 2.16 7.67 -2.39 -0.02 2.14 16 32 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 3.47 6.07 -2.39 -0.01 3.46 16 34 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 35 H 0.08 1.75 8.00 -2.38 -0.02 1.73 16 36 H 0.07 2.19 7.02 -2.39 -0.02 2.18 16 37 H 0.09 1.88 5.97 -2.39 -0.01 1.87 16 38 H 0.14 1.41 7.44 -2.38 -0.02 1.39 16 39 H 0.08 1.62 7.84 -2.39 -0.02 1.60 16 40 H 0.10 1.22 8.05 -2.39 -0.02 1.20 16 41 H 0.14 0.76 6.97 -2.39 -0.02 0.74 16 42 H 0.11 0.78 5.15 -2.39 -0.01 0.77 16 43 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.13 1.05 8.14 -2.38 -0.02 1.04 16 47 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.08 1.64 7.06 -2.39 -0.02 1.62 16 Total: -1.00 -89.18 382.09 2.48 -86.70 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.96 Total: 12.72 kcal Atomic # 6 Polarization: 17.36 SS G_CDS: 6.29 Total: 23.65 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -4.50 Total: -93.27 kcal Atomic # 8 Polarization: -73.05 SS G_CDS: -2.29 Total: -75.34 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -89.18 2.48 -86.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354666462.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.925 kcal (2) G-P(sol) polarization free energy of solvation -89.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds