Wall clock time and date at job start Tue Mar 31 2020 23:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47566 * 2 1 4 4 C 1.50700 * 109.46749 * 239.99627 * 2 1 3 5 5 H 1.08005 * 120.00298 * 240.00009 * 4 2 1 6 6 C 1.37880 * 119.99855 * 60.00471 * 4 2 1 7 7 N 1.31514 * 119.99863 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99927 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46863 * 59.99994 * 8 6 4 10 10 H 1.48496 * 109.46915 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46768 * 299.99820 * 8 6 4 12 12 N 1.46506 * 109.47137 * 120.00146 * 2 1 3 13 13 C 1.46497 * 119.99979 * 59.99853 * 12 2 1 14 14 C 1.34773 * 119.99520 * 239.99513 * 12 2 1 15 15 O 1.21276 * 120.00727 * 0.02562 * 14 12 2 16 16 C 1.50707 * 119.99594 * 179.97438 * 14 12 2 17 17 H 1.09002 * 110.33250 * 55.70211 * 16 14 12 18 18 C 1.54481 * 110.37478 * 293.45249 * 16 14 12 19 19 C 1.54503 * 104.06445 * 217.08263 * 18 16 14 20 20 C 1.54482 * 104.06349 * 359.97438 * 19 18 16 21 21 H 1.08995 * 110.37315 * 265.15262 * 20 19 18 22 22 C 1.50698 * 110.37169 * 142.92136 * 20 19 18 23 23 O 1.21274 * 120.00078 * 245.00251 * 22 20 19 24 24 N 1.34779 * 119.99730 * 65.00586 * 22 20 19 25 25 C 1.47148 * 120.98069 * 359.71435 * 24 22 20 26 26 C 1.53717 * 108.16072 * 129.43772 * 25 24 22 27 27 O 1.42960 * 109.14809 * 52.53605 * 26 25 24 28 28 C 1.42968 * 114.16628 * 297.28935 * 27 26 25 29 29 C 1.47149 * 120.97899 * 179.97438 * 24 22 20 30 30 O 1.44428 * 110.46412 * 178.01518 * 16 14 12 31 31 H 1.09002 * 109.47389 * 59.99631 * 1 2 3 32 32 H 1.09000 * 109.47290 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46910 * 299.99922 * 1 2 3 34 34 H 0.97004 * 119.99800 * 180.02562 * 7 6 4 35 35 H 1.09009 * 109.46800 * 269.99603 * 13 12 2 36 36 H 1.09000 * 109.47463 * 29.99918 * 13 12 2 37 37 H 1.08998 * 109.47300 * 150.00431 * 13 12 2 38 38 H 1.09007 * 110.50806 * 335.72589 * 18 16 14 39 39 H 1.08998 * 110.51350 * 98.29065 * 18 16 14 40 40 H 1.08994 * 110.51469 * 118.64075 * 19 18 16 41 41 H 1.09004 * 110.51074 * 241.35380 * 19 18 16 42 42 H 1.09008 * 109.67991 * 249.20975 * 25 24 22 43 43 H 1.08992 * 109.68843 * 9.76670 * 25 24 22 44 44 H 1.08994 * 109.65241 * 292.56721 * 26 25 24 45 45 H 1.08999 * 109.48752 * 172.39876 * 26 25 24 46 46 H 1.09002 * 109.50841 * 302.65590 * 28 27 26 47 47 H 1.09000 * 109.55539 * 182.53253 * 28 27 26 48 48 H 1.08995 * 109.68820 * 350.23293 * 29 24 22 49 49 H 1.09000 * 109.68228 * 110.78780 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6531 -1.5887 -1.1314 6 6 1.6991 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3223 -1.1197 -4.0080 9 1 1.8277 -2.5199 -4.0081 10 1 1.8267 -0.4201 -5.2204 11 1 3.8073 -1.1192 -4.0078 12 7 2.0183 -0.6907 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0832 15 8 3.0859 1.1256 1.8916 16 6 3.2951 -0.7459 3.3140 17 1 3.8390 -1.6485 3.0352 18 6 2.1177 -1.0956 4.2510 19 6 2.6921 -0.8864 5.6699 20 6 4.1489 -0.4358 5.4225 21 1 4.8233 -1.2908 5.4672 22 6 4.5550 0.6049 6.4340 23 8 4.8093 1.7345 6.0731 24 7 4.6356 0.2803 7.7396 25 6 4.3258 -1.0819 8.2019 26 6 5.4873 -1.5634 9.0863 27 8 5.7374 -0.5899 10.1029 28 6 6.1519 0.6842 9.6040 29 6 5.0304 1.2792 8.7454 30 8 4.1394 0.1293 4.0932 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.7081 1.1608 -3.4844 35 1 0.7375 -2.1443 1.9995 36 1 1.5294 -2.5969 0.4708 37 1 2.4628 -2.5819 1.9864 38 1 1.2777 -0.4232 4.0760 39 1 1.8117 -2.1321 4.1094 40 1 2.1362 -0.1107 6.1965 41 1 2.6718 -1.8203 6.2317 42 1 3.4010 -1.0723 8.7789 43 1 4.2169 -1.7450 7.3439 44 1 6.3822 -1.6925 8.4777 45 1 5.2219 -2.5136 9.5495 46 1 7.0493 0.5632 8.9974 47 1 6.3643 1.3516 10.4392 48 1 5.3883 2.1802 8.2474 49 1 4.1755 1.5228 9.3762 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354666464.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:10 Heat of formation + Delta-G solvation = -136.155220 kcal Electronic energy + Delta-G solvation = -30946.376995 eV Core-core repulsion = 26681.677509 eV Total energy + Delta-G solvation = -4264.699487 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.02732 -39.86228 -38.67956 -37.71293 -35.31634 -35.18159 -33.05033 -32.44296 -31.84960 -30.51435 -29.09030 -28.01193 -26.21323 -25.25220 -24.99544 -24.29150 -22.60873 -21.74384 -21.00772 -19.77880 -18.62687 -17.73914 -17.04158 -16.82965 -16.63961 -16.46174 -16.19767 -15.69483 -15.57141 -15.44176 -14.95330 -14.86996 -14.57178 -14.32665 -14.02625 -13.91015 -13.43534 -13.08586 -12.99881 -12.61471 -12.44993 -12.32525 -12.22863 -11.89375 -11.88327 -11.69810 -11.53666 -11.41427 -11.20704 -11.05353 -11.03730 -10.85073 -10.69493 -10.64479 -10.26532 -10.25326 -10.16747 -9.74002 -9.19621 -8.98624 -8.83747 -8.41844 -7.61753 -6.07007 -4.15372 2.27548 2.33357 3.23562 3.27891 3.30239 3.33503 3.35885 3.45354 3.93811 4.12874 4.19517 4.34804 4.40726 4.44457 4.54376 4.56375 4.67652 4.74193 4.82854 4.86104 4.94053 5.03807 5.10461 5.20444 5.22082 5.24493 5.29713 5.34496 5.44886 5.47092 5.64587 5.66357 5.90013 5.95319 5.96054 6.30964 6.50343 6.56684 6.75052 6.82677 6.93297 7.05617 7.41372 7.52862 7.70661 7.88536 8.01572 8.19062 8.48825 8.82827 9.03980 9.50875 10.98338 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.028970 B = 0.002258 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.300349 B =12394.833426 C =12578.961463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.259 3.741 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.590 5.590 13 C 0.081 3.919 14 C 0.508 3.492 15 O -0.526 6.526 16 C 0.055 3.945 17 H 0.093 0.907 18 C -0.141 4.141 19 C -0.143 4.143 20 C 0.055 3.945 21 H 0.095 0.905 22 C 0.523 3.477 23 O -0.504 6.504 24 N -0.619 5.619 25 C 0.069 3.931 26 C 0.046 3.954 27 O -0.380 6.380 28 C 0.048 3.952 29 C 0.078 3.922 30 O -0.312 6.312 31 H 0.094 0.906 32 H 0.030 0.970 33 H 0.011 0.989 34 H 0.264 0.736 35 H 0.044 0.956 36 H 0.083 0.917 37 H 0.051 0.949 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.058 0.942 45 H 0.108 0.892 46 H 0.057 0.943 47 H 0.108 0.892 48 H 0.103 0.897 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.654 -10.292 25.327 27.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.159 3.841 3 H 0.081 0.919 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.323 5.323 13 C -0.063 4.063 14 C 0.293 3.707 15 O -0.402 6.402 16 C -0.006 4.006 17 H 0.111 0.889 18 C -0.179 4.179 19 C -0.181 4.181 20 C -0.007 4.007 21 H 0.112 0.888 22 C 0.310 3.690 23 O -0.376 6.376 24 N -0.357 5.357 25 C -0.055 4.055 26 C -0.032 4.032 27 O -0.298 6.298 28 C -0.029 4.029 29 C -0.044 4.044 30 O -0.228 6.228 31 H 0.112 0.888 32 H 0.049 0.951 33 H 0.030 0.970 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.115 0.885 44 H 0.076 0.924 45 H 0.126 0.874 46 H 0.076 0.924 47 H 0.126 0.874 48 H 0.122 0.878 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.945 -8.729 24.933 26.875 hybrid contribution 0.192 -0.818 -1.076 1.365 sum 5.137 -9.546 23.857 26.205 Atomic orbital electron populations 1.22080 0.98074 0.99371 1.00848 1.18961 0.90896 0.94590 0.79631 0.91872 1.21264 1.31982 1.13080 0.90257 0.92258 1.24900 0.94933 0.94980 0.98973 1.69871 1.36180 1.22517 1.23907 0.86539 0.79270 0.79488 0.81979 1.20249 1.21165 1.20228 1.48168 1.49187 1.11583 1.23385 1.21688 0.98615 0.83379 1.02599 1.19824 0.79983 0.87267 0.83614 1.90712 1.57007 1.16659 1.75788 1.23028 0.91637 0.93432 0.92528 0.88919 1.22943 0.98699 1.03581 0.92649 1.23014 0.94084 1.02497 0.98467 1.22838 0.97948 0.94561 0.85374 0.88755 1.20291 0.77333 0.89251 0.82099 1.90776 1.46876 1.21312 1.78674 1.48034 1.69842 1.11676 1.06186 1.22682 0.99336 0.83485 0.99950 1.23087 0.97021 0.92417 0.90657 1.87972 1.88116 1.21404 1.32286 1.23009 0.95838 0.85351 0.98731 1.22283 0.98655 0.93037 0.90454 1.89458 1.67852 1.48320 1.17198 0.88782 0.95134 0.97032 0.92585 0.93709 0.89867 0.93008 0.89607 0.88987 0.89949 0.89261 0.89971 0.88474 0.92358 0.87404 0.92433 0.87409 0.87846 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.97 37.16 0.33 -3.13 16 2 C 0.26 6.67 2.64 -69.08 -0.18 6.49 16 3 H 0.06 1.92 6.90 -51.93 -0.36 1.56 16 4 C -0.53 -14.22 7.99 -34.44 -0.28 -14.50 16 5 H 0.06 1.55 7.33 -52.48 -0.38 1.17 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.26 11.32 55.43 0.63 -24.63 16 8 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.59 -12.51 2.75 -175.26 -0.48 -13.00 16 13 C 0.08 1.27 8.11 59.85 0.49 1.75 16 14 C 0.51 11.06 6.99 -10.98 -0.08 10.99 16 15 O -0.53 -14.34 15.89 -13.59 -0.22 -14.55 16 16 C 0.06 0.87 2.78 -27.10 -0.08 0.79 16 17 H 0.09 1.21 7.20 -51.93 -0.37 0.83 16 18 C -0.14 -1.60 5.59 -25.17 -0.14 -1.74 16 19 C -0.14 -1.30 5.54 -25.16 -0.14 -1.44 16 20 C 0.05 0.65 2.77 -27.11 -0.08 0.58 16 21 H 0.09 0.82 7.55 -51.93 -0.39 0.43 16 22 C 0.52 7.03 7.03 -10.99 -0.08 6.95 16 23 O -0.50 -9.41 16.02 -13.61 -0.22 -9.62 16 24 N -0.62 -5.77 3.01 -172.05 -0.52 -6.29 16 25 C 0.07 0.38 5.87 -3.32 -0.02 0.36 16 26 C 0.05 0.24 7.00 37.53 0.26 0.50 16 27 O -0.38 -2.85 10.74 -35.23 -0.38 -3.23 16 28 C 0.05 0.32 6.98 37.29 0.26 0.58 16 29 C 0.08 0.65 6.63 -3.56 -0.02 0.63 16 30 O -0.31 -5.63 10.19 -64.18 -0.65 -6.28 16 31 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 32 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 33 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.04 0.60 8.04 -51.92 -0.42 0.18 16 36 H 0.08 1.40 7.02 -51.93 -0.36 1.04 16 37 H 0.05 0.63 6.03 -51.93 -0.31 0.31 16 38 H 0.09 1.14 7.87 -51.93 -0.41 0.73 16 39 H 0.09 0.75 7.40 -51.93 -0.38 0.37 16 40 H 0.08 0.81 7.87 -51.93 -0.41 0.41 16 41 H 0.09 0.44 6.90 -51.93 -0.36 0.08 16 42 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 43 H 0.10 0.38 4.70 -51.93 -0.24 0.13 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.10 1.02 7.08 -51.93 -0.37 0.65 16 49 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 381.91 15.07 5.76 5.76 Total: -1.00 -38.14 381.91 -8.53 -46.66 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -7.58 Total: -1.32 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 0.16 Total: 10.49 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: -0.37 Total: -43.92 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -1.47 Total: -33.69 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -38.14 -8.53 -46.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354666464.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.491 kcal (2) G-P(sol) polarization free energy of solvation -38.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds