Wall clock time and date at job start Tue Mar 31 2020 23:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47117 * 2 1 4 4 C 1.50698 * 109.47109 * 239.99922 * 2 1 3 5 5 H 1.08004 * 120.00362 * 239.99907 * 4 2 1 6 6 C 1.37878 * 120.00163 * 60.00235 * 4 2 1 7 7 N 1.31523 * 119.99512 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00395 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46974 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47198 * 119.99472 * 8 6 4 11 11 H 1.48502 * 109.46974 * 239.99937 * 8 6 4 12 12 N 1.46503 * 109.47249 * 120.00178 * 2 1 3 13 13 C 1.46500 * 120.00118 * 59.99691 * 12 2 1 14 14 C 1.34779 * 119.99698 * 239.99998 * 12 2 1 15 15 O 1.21284 * 120.00098 * 5.35052 * 14 12 2 16 16 C 1.50701 * 119.99845 * 185.35089 * 14 12 2 17 17 H 1.09004 * 110.35069 * 310.41094 * 16 14 12 18 18 C 1.54941 * 110.30973 * 72.55126 * 16 14 12 19 19 C 1.55305 * 100.94182 * 155.35877 * 18 16 14 20 20 C 1.54382 * 102.25426 * 325.87013 * 19 18 16 21 21 H 1.09001 * 109.82747 * 261.74820 * 20 19 18 22 22 C 1.50697 * 109.83482 * 140.86861 * 20 19 18 23 23 O 1.21273 * 120.00139 * 245.00246 * 22 20 19 24 24 N 1.34782 * 120.00060 * 64.99659 * 22 20 19 25 25 C 1.47146 * 120.98494 * 180.02562 * 24 22 20 26 26 C 1.53296 * 108.38815 * 129.44135 * 25 24 22 27 27 O 1.42961 * 109.22005 * 52.30365 * 26 25 24 28 28 C 1.42961 * 114.16599 * 297.42044 * 27 26 25 29 29 C 1.47148 * 120.98027 * 359.97438 * 24 22 20 30 30 O 1.43242 * 107.58922 * 21.35383 * 20 19 18 31 31 H 1.09003 * 109.47117 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47069 * 299.99737 * 1 2 3 33 33 H 1.08998 * 109.47495 * 59.99728 * 1 2 3 34 34 H 0.97007 * 119.99394 * 180.02562 * 7 6 4 35 35 H 1.08993 * 109.46869 * 273.69445 * 13 12 2 36 36 H 1.09000 * 109.46949 * 33.69636 * 13 12 2 37 37 H 1.09002 * 109.46959 * 153.68831 * 13 12 2 38 38 H 1.09001 * 111.12865 * 37.44278 * 18 16 14 39 39 H 1.09000 * 111.16180 * 273.29419 * 18 16 14 40 40 H 1.08995 * 110.84823 * 207.67589 * 19 18 16 41 41 H 1.09002 * 110.84757 * 84.05760 * 19 18 16 42 42 H 1.09003 * 109.67844 * 9.72060 * 25 24 22 43 43 H 1.08996 * 109.68434 * 249.16989 * 25 24 22 44 44 H 1.08992 * 109.51233 * 172.22690 * 26 25 24 45 45 H 1.09005 * 109.51243 * 292.33338 * 26 25 24 46 46 H 1.09010 * 109.51278 * 182.50459 * 28 27 26 47 47 H 1.09003 * 109.51161 * 302.65456 * 28 27 26 48 48 H 1.09004 * 109.67985 * 110.82885 * 29 24 22 49 49 H 1.09002 * 109.68440 * 350.28101 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8297 -2.6033 8 14 2.3213 -1.1203 -4.0080 9 1 3.1463 -2.2870 -3.6038 10 1 1.1660 -1.5867 -4.8160 11 1 3.1465 -0.1873 -4.8165 12 7 2.0183 -0.6907 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0064 1.1501 1.9429 16 6 3.3946 -0.7765 3.2497 17 1 2.6300 -1.3589 3.7638 18 6 4.5405 -1.7008 2.7666 19 6 5.3859 -1.8248 4.0635 20 6 5.2060 -0.4327 4.7062 21 1 6.0650 0.1962 4.4726 22 6 5.0669 -0.5734 6.2002 23 8 4.0269 -0.2677 6.7439 24 7 6.0984 -1.0391 6.9321 25 6 5.9862 -1.1857 8.3919 26 6 6.4383 -2.6003 8.7720 27 8 7.7271 -2.8505 8.2061 28 6 7.7547 -2.8198 6.7771 29 6 7.3697 -1.4171 6.2948 30 8 4.0149 0.1458 4.1598 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 0.7081 1.1609 -3.4844 35 1 0.7046 -2.1455 1.9419 36 1 1.5937 -2.6128 0.4724 37 1 2.4316 -2.5648 2.0421 38 1 5.1138 -1.2310 1.9674 39 1 4.1571 -2.6718 2.4532 40 1 6.4336 -2.0105 3.8273 41 1 4.9889 -2.6057 4.7121 42 1 4.9505 -1.0369 8.6972 43 1 6.6237 -0.4517 8.8847 44 1 6.4945 -2.6853 9.8572 45 1 5.7232 -3.3271 8.3864 46 1 8.7581 -3.0628 6.4270 47 1 7.0449 -3.5474 6.3835 48 1 8.1469 -0.7063 6.5759 49 1 7.2503 -1.4215 5.2113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354666465.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:12 Heat of formation + Delta-G solvation = -135.231786 kcal Electronic energy + Delta-G solvation = -31138.221408 eV Core-core repulsion = 26873.561964 eV Total energy + Delta-G solvation = -4264.659443 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.10377 -39.84611 -38.68601 -37.68091 -35.31736 -35.18934 -33.05775 -32.54461 -31.85725 -30.53548 -29.10263 -28.07494 -26.19865 -25.26393 -24.92579 -24.17427 -22.50556 -22.13688 -20.92154 -19.59104 -18.64668 -18.07720 -17.03007 -16.93408 -16.51972 -16.41774 -16.04458 -15.88194 -15.50254 -15.39227 -15.13990 -14.90578 -14.56146 -14.45475 -14.00064 -13.43207 -13.37194 -13.26506 -13.00951 -12.59021 -12.47644 -12.29907 -12.12506 -11.95087 -11.87137 -11.71730 -11.62194 -11.49549 -11.24805 -11.10864 -11.03810 -10.83931 -10.69522 -10.64736 -10.44317 -10.24598 -10.19299 -9.53567 -9.18699 -8.98163 -8.79123 -8.44255 -7.60656 -6.09429 -4.17993 2.30014 2.36064 3.19419 3.23492 3.30158 3.30940 3.32913 3.46853 3.96886 4.06367 4.21291 4.24984 4.35895 4.42589 4.54681 4.59207 4.67102 4.75976 4.82056 4.89902 4.99044 5.09537 5.11810 5.20568 5.21095 5.24185 5.28702 5.33441 5.44733 5.47510 5.49570 5.77138 5.92220 5.98438 6.01326 6.31555 6.57011 6.66364 6.77923 6.86020 6.96893 7.07400 7.42418 7.52373 7.69408 7.87736 8.01038 8.17337 8.48925 8.80559 9.02542 9.48478 10.95895 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023388 B = 0.002456 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.924135 B =11399.520003 C =11962.789905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.259 3.741 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.886 5.886 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.590 5.590 13 C 0.077 3.923 14 C 0.507 3.493 15 O -0.531 6.531 16 C 0.062 3.938 17 H 0.091 0.909 18 C -0.142 4.142 19 C -0.145 4.145 20 C 0.065 3.935 21 H 0.109 0.891 22 C 0.507 3.493 23 O -0.514 6.514 24 N -0.618 5.618 25 C 0.077 3.923 26 C 0.048 3.952 27 O -0.379 6.379 28 C 0.047 3.953 29 C 0.063 3.937 30 O -0.319 6.319 31 H 0.029 0.971 32 H 0.012 0.988 33 H 0.093 0.907 34 H 0.263 0.737 35 H 0.045 0.955 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.102 0.898 43 H 0.076 0.924 44 H 0.107 0.893 45 H 0.057 0.943 46 H 0.108 0.892 47 H 0.058 0.942 48 H 0.081 0.919 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.419 -11.631 18.670 25.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.323 5.323 13 C -0.067 4.067 14 C 0.292 3.708 15 O -0.408 6.408 16 C 0.001 3.999 17 H 0.109 0.891 18 C -0.179 4.179 19 C -0.183 4.183 20 C 0.003 3.997 21 H 0.126 0.874 22 C 0.294 3.706 23 O -0.388 6.388 24 N -0.356 5.356 25 C -0.046 4.046 26 C -0.029 4.029 27 O -0.298 6.298 28 C -0.031 4.031 29 C -0.061 4.061 30 O -0.235 6.235 31 H 0.049 0.951 32 H 0.031 0.969 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.112 0.888 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.101 0.899 42 H 0.120 0.880 43 H 0.094 0.906 44 H 0.125 0.875 45 H 0.075 0.925 46 H 0.126 0.874 47 H 0.076 0.924 48 H 0.099 0.901 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 12.904 -10.510 18.872 25.162 hybrid contribution 0.143 -0.666 -1.013 1.221 sum 13.047 -11.176 17.859 24.780 Atomic orbital electron populations 1.22076 0.98110 0.99414 1.00904 1.18962 0.91029 0.94506 0.79576 0.91903 1.21334 1.31901 1.13019 0.90214 0.92146 1.24910 0.94961 0.94985 0.98985 1.69904 1.36221 1.22574 1.23683 0.86435 0.78584 0.79520 0.82788 1.19836 1.20939 1.20926 1.48163 1.48906 1.11703 1.23490 1.21747 0.99035 0.83452 1.02458 1.20019 0.80016 0.87651 0.83136 1.90677 1.60367 1.15038 1.74734 1.23008 0.96171 0.90293 0.90460 0.89143 1.23303 0.95929 1.00987 0.97718 1.23243 1.02249 0.95602 0.97219 1.22653 0.91218 0.96236 0.89624 0.87379 1.21192 0.83039 0.76532 0.89793 1.90723 1.27738 1.47641 1.72694 1.48112 1.13832 1.66217 1.07488 1.22282 1.04237 0.97681 0.80378 1.23004 0.85243 0.95067 0.99593 1.87977 1.30169 1.91939 1.19673 1.22989 1.03089 0.95284 0.81705 1.22664 0.86180 0.97572 0.99635 1.88674 1.37513 1.38437 1.58908 0.95146 0.96896 0.88817 0.92693 0.93618 0.89971 0.92712 0.88804 0.88281 0.88505 0.89853 0.87974 0.90561 0.87498 0.92495 0.87359 0.92364 0.90108 0.88077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.97 37.15 0.33 -3.22 16 2 C 0.26 6.63 2.63 -69.09 -0.18 6.45 16 3 H 0.06 1.88 6.91 -51.93 -0.36 1.53 16 4 C -0.53 -13.88 8.02 -34.44 -0.28 -14.16 16 5 H 0.06 1.54 7.27 -52.48 -0.38 1.16 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.94 11.32 55.43 0.63 -24.32 16 8 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.59 -12.56 2.75 -175.26 -0.48 -13.04 16 13 C 0.08 1.25 9.16 59.85 0.55 1.80 16 14 C 0.51 10.93 7.01 -10.98 -0.08 10.85 16 15 O -0.53 -13.99 15.91 -13.65 -0.22 -14.21 16 16 C 0.06 1.01 2.89 -26.86 -0.08 0.93 16 17 H 0.09 1.35 7.52 -51.93 -0.39 0.96 16 18 C -0.14 -1.66 6.05 -24.48 -0.15 -1.81 16 19 C -0.15 -1.26 5.35 -24.78 -0.13 -1.40 16 20 C 0.06 0.80 3.08 -27.16 -0.08 0.71 16 21 H 0.11 1.14 7.83 -51.93 -0.41 0.74 16 22 C 0.51 6.56 6.98 -10.98 -0.08 6.48 16 23 O -0.51 -8.94 15.99 -14.09 -0.23 -9.16 16 24 N -0.62 -5.72 3.02 -172.31 -0.52 -6.24 16 25 C 0.08 0.63 6.64 -3.54 -0.02 0.60 16 26 C 0.05 0.31 6.99 37.31 0.26 0.57 16 27 O -0.38 -2.86 10.74 -35.23 -0.38 -3.24 16 28 C 0.05 0.25 6.98 37.29 0.26 0.51 16 29 C 0.06 0.37 6.20 -3.56 -0.02 0.35 16 30 O -0.32 -5.71 9.83 -64.38 -0.63 -6.35 16 31 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 32 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 34 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 1.39 6.98 -51.93 -0.36 1.03 16 37 H 0.05 0.69 4.46 -51.93 -0.23 0.46 16 38 H 0.09 1.21 8.05 -51.93 -0.42 0.79 16 39 H 0.10 0.96 6.48 -51.93 -0.34 0.62 16 40 H 0.10 0.52 6.61 -51.93 -0.34 0.18 16 41 H 0.08 0.65 7.84 -51.93 -0.41 0.25 16 42 H 0.10 0.96 7.08 -51.93 -0.37 0.59 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.11 0.36 8.14 -51.92 -0.42 -0.07 16 47 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.10 0.47 4.01 -51.93 -0.21 0.26 16 LS Contribution 380.90 15.07 5.74 5.74 Total: -1.00 -36.70 380.90 -8.34 -45.04 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -7.44 Total: -0.08 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 0.21 Total: 10.30 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: -0.38 Total: -43.60 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -1.45 Total: -32.96 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.70 -8.34 -45.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354666465.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.190 kcal (2) G-P(sol) polarization free energy of solvation -36.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds