Wall clock time and date at job start Tue Mar 31 2020 23:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46782 * 2 1 4 4 C 1.50703 * 109.47000 * 240.00534 * 2 1 3 5 5 H 1.07998 * 119.99571 * 239.99750 * 4 2 1 6 6 C 1.37868 * 120.00228 * 59.99767 * 4 2 1 7 7 N 1.31511 * 120.00326 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00031 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47069 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47191 * 120.00047 * 8 6 4 11 11 H 1.48509 * 109.46897 * 240.00203 * 8 6 4 12 12 N 1.46491 * 109.47136 * 120.00160 * 2 1 3 13 13 C 1.46501 * 120.00112 * 60.00119 * 12 2 1 14 14 C 1.34777 * 120.00300 * 240.00394 * 12 2 1 15 15 O 1.21288 * 119.99782 * 4.65571 * 14 12 2 16 16 C 1.50702 * 120.00274 * 184.66490 * 14 12 2 17 17 H 1.09001 * 110.33006 * 308.24584 * 16 14 12 18 18 C 1.54484 * 110.37353 * 70.49481 * 16 14 12 19 19 C 1.54507 * 104.05969 * 142.81141 * 18 16 14 20 20 C 1.54471 * 104.06687 * 359.97438 * 19 18 16 21 21 H 1.09000 * 110.37148 * 94.85247 * 20 19 18 22 22 C 1.50699 * 110.37381 * 217.18809 * 20 19 18 23 23 O 1.21286 * 119.99554 * 114.99885 * 22 20 19 24 24 N 1.34774 * 120.00470 * 295.00193 * 22 20 19 25 25 C 1.47153 * 120.97915 * 359.71505 * 24 22 20 26 26 C 1.53719 * 108.15897 * 129.43050 * 25 24 22 27 27 O 1.42962 * 109.14611 * 52.54126 * 26 25 24 28 28 C 1.42968 * 114.16362 * 297.28811 * 27 26 25 29 29 C 1.47144 * 120.98316 * 180.02562 * 24 22 20 30 30 O 1.44423 * 110.37155 * 185.87344 * 16 14 12 31 31 H 1.09004 * 109.47214 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47164 * 299.99933 * 1 2 3 33 33 H 1.09003 * 109.47388 * 60.00177 * 1 2 3 34 34 H 0.97001 * 120.00572 * 179.97438 * 7 6 4 35 35 H 1.09002 * 109.47030 * 264.34473 * 13 12 2 36 36 H 1.08999 * 109.47372 * 24.34586 * 13 12 2 37 37 H 1.09004 * 109.47470 * 144.34251 * 13 12 2 38 38 H 1.08994 * 110.50941 * 24.16487 * 18 16 14 39 39 H 1.08999 * 110.62721 * 261.51443 * 18 16 14 40 40 H 1.09005 * 110.50767 * 118.64604 * 19 18 16 41 41 H 1.08999 * 110.50961 * 241.35206 * 19 18 16 42 42 H 1.08997 * 109.68569 * 249.21145 * 25 24 22 43 43 H 1.09000 * 109.67820 * 9.76662 * 25 24 22 44 44 H 1.08996 * 109.65677 * 292.57340 * 26 25 24 45 45 H 1.09001 * 109.48163 * 172.40046 * 26 25 24 46 46 H 1.08997 * 109.51011 * 302.65579 * 28 27 26 47 47 H 1.08998 * 109.54867 * 182.53130 * 28 27 26 48 48 H 1.09001 * 109.68563 * 350.23144 * 29 24 22 49 49 H 1.09000 * 109.68504 * 110.79185 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1465 -2.2868 -3.6039 10 1 1.1660 -1.5864 -4.8161 11 1 3.1466 -0.1870 -4.8165 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.7931 -0.0357 2.0833 15 8 3.0166 1.1473 1.9361 16 6 3.3819 -0.7732 3.2583 17 1 2.6027 -1.3153 3.7942 18 6 4.4852 -1.7454 2.7850 19 6 5.5533 -1.6722 3.8990 20 6 4.9694 -0.6639 4.9132 21 1 4.4344 -1.1886 5.7048 22 6 6.0666 0.1890 5.4961 23 8 6.0880 1.3818 5.2779 24 7 7.0239 -0.3738 6.2598 25 6 7.0153 -1.8177 6.5433 26 6 8.4102 -2.3775 6.2210 27 8 9.3965 -1.6023 6.9066 28 6 9.4439 -0.2303 6.5074 29 6 8.1048 0.4386 6.8401 30 8 4.0564 0.1476 4.1431 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 0.7095 1.1620 -3.4844 35 1 0.7947 -2.1450 2.0829 36 1 1.4316 -2.5713 0.4764 37 1 2.5037 -2.6070 1.8968 38 1 4.9023 -1.4156 1.8336 39 1 4.0927 -2.7586 2.6981 40 1 5.6871 -2.6487 4.3645 41 1 6.4985 -1.3062 3.4983 42 1 6.7841 -1.9839 7.5955 43 1 6.2681 -2.3096 5.9206 44 1 8.5873 -2.3245 5.1468 45 1 8.4701 -3.4153 6.5491 46 1 9.6248 -0.1695 5.4342 47 1 10.2470 0.2774 7.0414 48 1 8.0796 1.4416 6.4141 49 1 7.9813 0.4954 7.9216 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354666467.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:15 Heat of formation + Delta-G solvation = -133.611386 kcal Electronic energy + Delta-G solvation = -31117.318591 eV Core-core repulsion = 26852.729414 eV Total energy + Delta-G solvation = -4264.589178 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.03588 -39.84023 -38.65699 -37.71543 -35.31455 -35.16697 -33.04751 -32.49899 -31.80859 -30.48894 -29.08722 -28.03536 -26.21215 -25.26586 -24.96148 -24.21864 -22.51770 -21.97638 -20.96219 -19.70580 -18.67875 -17.75500 -17.02823 -16.74031 -16.60655 -16.35400 -16.06591 -15.85671 -15.61520 -15.37461 -15.16986 -14.74197 -14.56872 -14.38591 -13.95272 -13.89715 -13.47260 -13.14634 -12.98116 -12.58577 -12.45965 -12.41771 -12.12411 -11.90247 -11.80360 -11.64782 -11.60113 -11.30786 -11.20831 -11.07782 -10.95568 -10.83774 -10.70134 -10.61997 -10.28851 -10.20045 -10.19024 -9.73737 -9.19260 -8.96559 -8.85084 -8.43959 -7.61296 -6.08712 -4.17286 2.30069 2.33712 3.23539 3.24927 3.31071 3.32974 3.34057 3.45474 3.95476 4.15253 4.22467 4.34044 4.40292 4.44345 4.57124 4.59166 4.66110 4.78879 4.83203 4.86488 4.97468 5.05984 5.13123 5.19147 5.21752 5.23028 5.31841 5.36148 5.42426 5.46820 5.63331 5.77269 5.94131 5.96748 5.98500 6.30621 6.51050 6.59386 6.76394 6.84479 6.95002 7.06521 7.42183 7.52368 7.69859 7.90063 8.01188 8.17886 8.48710 8.81522 9.03331 9.49287 10.96685 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019560 B = 0.002507 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.115117 B =11166.191618 C =11525.569780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.259 3.741 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.886 5.886 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.590 5.590 13 C 0.077 3.923 14 C 0.509 3.491 15 O -0.526 6.526 16 C 0.056 3.944 17 H 0.091 0.909 18 C -0.141 4.141 19 C -0.144 4.144 20 C 0.055 3.945 21 H 0.096 0.904 22 C 0.523 3.477 23 O -0.504 6.504 24 N -0.619 5.619 25 C 0.063 3.937 26 C 0.046 3.954 27 O -0.380 6.380 28 C 0.048 3.952 29 C 0.078 3.922 30 O -0.312 6.312 31 H 0.029 0.971 32 H 0.012 0.988 33 H 0.093 0.907 34 H 0.263 0.737 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.053 0.947 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.101 0.899 44 H 0.059 0.941 45 H 0.108 0.892 46 H 0.058 0.942 47 H 0.108 0.892 48 H 0.103 0.897 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.222 -12.405 19.620 26.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.159 3.841 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.324 5.324 13 C -0.067 4.067 14 C 0.293 3.707 15 O -0.402 6.402 16 C -0.005 4.005 17 H 0.109 0.891 18 C -0.179 4.179 19 C -0.182 4.182 20 C -0.007 4.007 21 H 0.113 0.887 22 C 0.310 3.690 23 O -0.376 6.376 24 N -0.357 5.357 25 C -0.060 4.060 26 C -0.031 4.031 27 O -0.298 6.298 28 C -0.030 4.030 29 C -0.044 4.044 30 O -0.229 6.229 31 H 0.049 0.951 32 H 0.031 0.969 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.119 0.881 44 H 0.077 0.923 45 H 0.126 0.874 46 H 0.076 0.924 47 H 0.126 0.874 48 H 0.122 0.878 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.318 -10.791 19.385 25.377 hybrid contribution 0.034 -0.759 -1.004 1.260 sum 12.352 -11.550 18.381 24.977 Atomic orbital electron populations 1.22081 0.98072 0.99383 1.00899 1.18971 0.90997 0.94559 0.79573 0.91901 1.21339 1.31898 1.13048 0.90225 0.92154 1.24901 0.94944 0.94977 0.98988 1.69891 1.36277 1.22520 1.23704 0.86440 0.78581 0.79542 0.82794 1.19829 1.20930 1.20909 1.48158 1.48995 1.11695 1.23505 1.21745 0.98878 0.83379 1.02688 1.19852 0.79988 0.87573 0.83237 1.90712 1.59553 1.15198 1.74728 1.23019 0.95635 0.90348 0.91548 0.89117 1.22947 0.94824 1.00128 1.00026 1.23056 1.00367 0.98822 0.95917 1.22836 0.90776 0.91365 0.95697 0.88658 1.20300 0.82183 0.88450 0.78043 1.90778 1.74230 1.15159 1.57484 1.48025 1.27291 1.08683 1.51723 1.22753 0.99460 0.80865 1.02881 1.23071 0.86902 0.95843 0.97314 1.87970 1.56639 1.20842 1.64321 1.23025 0.96985 0.82360 1.00608 1.22297 0.86139 0.96810 0.99150 1.89437 1.53597 1.28299 1.51539 0.95148 0.96920 0.88815 0.92681 0.93881 0.89647 0.92815 0.89221 0.88884 0.89180 0.89959 0.90125 0.88147 0.92256 0.87428 0.92368 0.87423 0.87850 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 8.97 37.16 0.33 -3.18 16 2 C 0.26 6.65 2.62 -69.09 -0.18 6.46 16 3 H 0.06 1.91 6.91 -51.93 -0.36 1.55 16 4 C -0.53 -14.02 7.95 -34.44 -0.27 -14.29 16 5 H 0.06 1.56 7.43 -52.49 -0.39 1.17 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.12 11.32 55.43 0.63 -24.50 16 8 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 12 N -0.59 -12.50 2.75 -175.26 -0.48 -12.99 16 13 C 0.08 1.21 8.92 59.85 0.53 1.74 16 14 C 0.51 11.04 6.93 -10.98 -0.08 10.97 16 15 O -0.53 -14.27 15.90 -13.59 -0.22 -14.49 16 16 C 0.06 0.88 2.79 -27.10 -0.08 0.81 16 17 H 0.09 1.14 7.79 -51.93 -0.40 0.74 16 18 C -0.14 -1.70 5.72 -25.16 -0.14 -1.84 16 19 C -0.14 -1.36 5.54 -25.17 -0.14 -1.50 16 20 C 0.06 0.67 2.78 -27.11 -0.08 0.59 16 21 H 0.10 0.84 7.91 -51.93 -0.41 0.43 16 22 C 0.52 7.14 7.03 -10.99 -0.08 7.07 16 23 O -0.50 -9.50 16.02 -13.66 -0.22 -9.72 16 24 N -0.62 -5.94 3.01 -172.00 -0.52 -6.46 16 25 C 0.06 0.37 6.26 -3.31 -0.02 0.35 16 26 C 0.05 0.26 7.00 37.53 0.26 0.52 16 27 O -0.38 -2.99 10.74 -35.23 -0.38 -3.36 16 28 C 0.05 0.34 6.99 37.33 0.26 0.60 16 29 C 0.08 0.67 6.64 -3.52 -0.02 0.65 16 30 O -0.31 -5.63 10.18 -64.19 -0.65 -6.28 16 31 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 32 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 1.43 7.11 -51.93 -0.37 1.06 16 37 H 0.05 0.65 4.75 -51.93 -0.25 0.40 16 38 H 0.09 1.31 7.86 -51.93 -0.41 0.90 16 39 H 0.09 0.81 6.66 -51.93 -0.35 0.47 16 40 H 0.09 0.46 6.52 -51.93 -0.34 0.12 16 41 H 0.08 0.84 7.86 -51.93 -0.41 0.44 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.10 0.43 4.02 -51.93 -0.21 0.22 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.10 1.05 7.08 -51.93 -0.37 0.68 16 49 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 381.30 15.07 5.75 5.75 Total: -1.00 -37.86 381.30 -8.39 -46.26 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -7.49 Total: -0.58 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 0.21 Total: 10.61 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.37 Total: -43.94 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -1.47 Total: -33.85 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.86 -8.39 -46.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354666467.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.354 kcal (2) G-P(sol) polarization free energy of solvation -37.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds