Wall clock time and date at job start Tue Mar 31 2020 23:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46782 * 2 1 4 4 C 1.50703 * 109.47000 * 240.00534 * 2 1 3 5 5 H 1.07998 * 119.99571 * 239.99750 * 4 2 1 6 6 C 1.37868 * 120.00228 * 59.99767 * 4 2 1 7 7 N 1.31511 * 120.00326 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00031 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47069 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47191 * 120.00047 * 8 6 4 11 11 H 1.48509 * 109.46897 * 240.00203 * 8 6 4 12 12 N 1.46491 * 109.47136 * 120.00160 * 2 1 3 13 13 C 1.46501 * 120.00112 * 60.00119 * 12 2 1 14 14 C 1.34777 * 120.00300 * 240.00394 * 12 2 1 15 15 O 1.21288 * 119.99782 * 4.65571 * 14 12 2 16 16 C 1.50702 * 120.00274 * 184.66490 * 14 12 2 17 17 H 1.09001 * 110.33006 * 308.24584 * 16 14 12 18 18 C 1.54484 * 110.37353 * 70.49481 * 16 14 12 19 19 C 1.54507 * 104.05969 * 142.81141 * 18 16 14 20 20 C 1.54471 * 104.06687 * 359.97438 * 19 18 16 21 21 H 1.09000 * 110.37148 * 94.85247 * 20 19 18 22 22 C 1.50699 * 110.37381 * 217.18809 * 20 19 18 23 23 O 1.21286 * 119.99554 * 114.99885 * 22 20 19 24 24 N 1.34774 * 120.00470 * 295.00193 * 22 20 19 25 25 C 1.47153 * 120.97915 * 359.71505 * 24 22 20 26 26 C 1.53719 * 108.15897 * 129.43050 * 25 24 22 27 27 O 1.42962 * 109.14611 * 52.54126 * 26 25 24 28 28 C 1.42968 * 114.16362 * 297.28811 * 27 26 25 29 29 C 1.47144 * 120.98316 * 180.02562 * 24 22 20 30 30 O 1.44423 * 110.37155 * 185.87344 * 16 14 12 31 31 H 1.09004 * 109.47214 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47164 * 299.99933 * 1 2 3 33 33 H 1.09003 * 109.47388 * 60.00177 * 1 2 3 34 34 H 0.97001 * 120.00572 * 179.97438 * 7 6 4 35 35 H 1.09002 * 109.47030 * 264.34473 * 13 12 2 36 36 H 1.08999 * 109.47372 * 24.34586 * 13 12 2 37 37 H 1.09004 * 109.47470 * 144.34251 * 13 12 2 38 38 H 1.08994 * 110.50941 * 24.16487 * 18 16 14 39 39 H 1.08999 * 110.62721 * 261.51443 * 18 16 14 40 40 H 1.09005 * 110.50767 * 118.64604 * 19 18 16 41 41 H 1.08999 * 110.50961 * 241.35206 * 19 18 16 42 42 H 1.08997 * 109.68569 * 249.21145 * 25 24 22 43 43 H 1.09000 * 109.67820 * 9.76662 * 25 24 22 44 44 H 1.08996 * 109.65677 * 292.57340 * 26 25 24 45 45 H 1.09001 * 109.48163 * 172.40046 * 26 25 24 46 46 H 1.08997 * 109.51011 * 302.65579 * 28 27 26 47 47 H 1.08998 * 109.54867 * 182.53130 * 28 27 26 48 48 H 1.09001 * 109.68563 * 350.23144 * 29 24 22 49 49 H 1.09000 * 109.68504 * 110.79185 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1465 -2.2868 -3.6039 10 1 1.1660 -1.5864 -4.8161 11 1 3.1466 -0.1870 -4.8165 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.7931 -0.0357 2.0833 15 8 3.0166 1.1473 1.9361 16 6 3.3819 -0.7732 3.2583 17 1 2.6027 -1.3153 3.7942 18 6 4.4852 -1.7454 2.7850 19 6 5.5533 -1.6722 3.8990 20 6 4.9694 -0.6639 4.9132 21 1 4.4344 -1.1886 5.7048 22 6 6.0666 0.1890 5.4961 23 8 6.0880 1.3818 5.2779 24 7 7.0239 -0.3738 6.2598 25 6 7.0153 -1.8177 6.5433 26 6 8.4102 -2.3775 6.2210 27 8 9.3965 -1.6023 6.9066 28 6 9.4439 -0.2303 6.5074 29 6 8.1048 0.4386 6.8401 30 8 4.0564 0.1476 4.1431 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 0.7095 1.1620 -3.4844 35 1 0.7947 -2.1450 2.0829 36 1 1.4316 -2.5713 0.4764 37 1 2.5037 -2.6070 1.8968 38 1 4.9023 -1.4156 1.8336 39 1 4.0927 -2.7586 2.6981 40 1 5.6871 -2.6487 4.3645 41 1 6.4985 -1.3062 3.4983 42 1 6.7841 -1.9839 7.5955 43 1 6.2681 -2.3096 5.9206 44 1 8.5873 -2.3245 5.1468 45 1 8.4701 -3.4153 6.5491 46 1 9.6248 -0.1695 5.4342 47 1 10.2470 0.2774 7.0414 48 1 8.0796 1.4416 6.4141 49 1 7.9813 0.4954 7.9216 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354666467.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:14 Heat of formation + Delta-G solvation = -162.123218 kcal Electronic energy + Delta-G solvation = -31118.554957 eV Core-core repulsion = 26852.729414 eV Total energy + Delta-G solvation = -4265.825543 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.99522 -41.02382 -39.72325 -38.88038 -37.13725 -35.98423 -34.91163 -33.41619 -32.72254 -31.77925 -30.47776 -28.83712 -27.62149 -27.32079 -25.97023 -24.91741 -23.47010 -22.80524 -22.55992 -20.58804 -20.09395 -18.89478 -18.42756 -17.97980 -17.72723 -17.43293 -17.20550 -16.83768 -16.55260 -16.48235 -16.22705 -15.96493 -15.73393 -15.55277 -15.21575 -14.86307 -14.76081 -14.35882 -14.28316 -13.91326 -13.57715 -13.52673 -13.38214 -13.12428 -12.96538 -12.94323 -12.73976 -12.69458 -12.49487 -12.39409 -12.36032 -12.21422 -12.10871 -11.95629 -11.61317 -11.34293 -11.23943 -11.19368 -10.78585 -10.60407 -10.42995 -9.69601 -9.35293 -8.15098 -6.32418 1.36553 1.41046 1.42870 1.47910 1.54312 1.69203 2.11594 2.42917 2.85218 2.96280 3.13379 3.17044 3.41520 3.70276 3.72503 3.77545 3.88784 3.95121 3.99643 4.09123 4.16136 4.22021 4.27871 4.36045 4.46950 4.56644 4.64306 4.72082 4.73843 4.76546 4.80315 4.85657 4.87837 4.89429 4.96988 4.99175 5.04818 5.09739 5.27006 5.45146 5.51304 5.65686 5.66797 6.03597 6.10003 6.14506 6.15383 6.76102 6.78318 6.97348 7.29730 7.45339 8.90073 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019560 B = 0.002507 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.115117 B =11166.191618 C =11525.569780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.260 3.740 3 H -0.002 1.002 4 C -0.534 4.534 5 H 0.069 0.931 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.969 3.031 9 H -0.258 1.258 10 H -0.274 1.274 11 H -0.290 1.290 12 N -0.593 5.593 13 C 0.069 3.931 14 C 0.492 3.508 15 O -0.602 6.602 16 C 0.064 3.936 17 H 0.137 0.863 18 C -0.137 4.137 19 C -0.131 4.131 20 C 0.049 3.951 21 H 0.142 0.858 22 C 0.514 3.486 23 O -0.578 6.578 24 N -0.610 5.610 25 C 0.058 3.942 26 C 0.041 3.959 27 O -0.392 6.392 28 C 0.055 3.945 29 C 0.073 3.927 30 O -0.368 6.368 31 H 0.053 0.947 32 H 0.015 0.985 33 H 0.066 0.934 34 H 0.264 0.736 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.053 0.947 39 H 0.142 0.858 40 H 0.152 0.848 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.125 0.875 44 H 0.058 0.942 45 H 0.139 0.861 46 H 0.049 0.951 47 H 0.126 0.874 48 H 0.077 0.923 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.998 -17.918 21.358 30.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.158 3.842 3 H 0.016 0.984 4 C -0.573 4.573 5 H 0.088 0.912 6 C -0.189 4.189 7 N -0.560 5.560 8 Si 0.794 3.206 9 H -0.181 1.181 10 H -0.200 1.200 11 H -0.216 1.216 12 N -0.324 5.324 13 C -0.073 4.073 14 C 0.280 3.720 15 O -0.484 6.484 16 C 0.003 3.997 17 H 0.154 0.846 18 C -0.175 4.175 19 C -0.168 4.168 20 C -0.011 4.011 21 H 0.159 0.841 22 C 0.302 3.698 23 O -0.456 6.456 24 N -0.346 5.346 25 C -0.063 4.063 26 C -0.036 4.036 27 O -0.310 6.310 28 C -0.022 4.022 29 C -0.050 4.050 30 O -0.286 6.286 31 H 0.072 0.928 32 H 0.034 0.966 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.117 0.883 38 H 0.072 0.928 39 H 0.160 0.840 40 H 0.170 0.830 41 H 0.086 0.914 42 H 0.117 0.883 43 H 0.142 0.858 44 H 0.076 0.924 45 H 0.156 0.844 46 H 0.067 0.933 47 H 0.144 0.856 48 H 0.096 0.904 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 13.111 -16.429 21.172 29.834 hybrid contribution -0.172 0.975 -1.462 1.766 sum 12.939 -15.454 19.710 28.191 Atomic orbital electron populations 1.21863 0.96979 1.00397 0.99712 1.18556 0.91796 0.91969 0.81845 0.98407 1.21609 1.31820 1.13137 0.90694 0.91249 1.25824 0.95093 0.95653 1.02329 1.70056 1.37524 1.24090 1.24370 0.85345 0.78195 0.78512 0.78573 1.18142 1.19962 1.21645 1.48139 1.48492 1.13835 1.21952 1.22115 1.01903 0.79938 1.03311 1.21117 0.79081 0.87134 0.84643 1.90668 1.62097 1.18800 1.76820 1.23108 0.97623 0.89688 0.89262 0.84586 1.23018 0.94258 1.01150 0.99065 1.23127 0.98461 1.00815 0.94409 1.23258 0.89994 0.91002 0.96882 0.84084 1.20840 0.83071 0.87855 0.77990 1.90746 1.76150 1.18228 1.60471 1.48146 1.25976 1.10569 1.49865 1.23121 1.00502 0.78124 1.04541 1.23323 0.85989 0.96967 0.97306 1.87960 1.57510 1.20782 1.64790 1.22983 0.96380 0.82531 1.00327 1.22393 0.86967 0.95966 0.99625 1.89405 1.55200 1.31273 1.52702 0.92759 0.96591 0.91526 0.92718 0.91152 0.90553 0.88328 0.92802 0.83993 0.83033 0.91433 0.88343 0.85765 0.92409 0.84375 0.93287 0.85622 0.90418 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.47 8.97 71.98 0.65 -5.82 16 2 C 0.26 13.93 2.62 44.25 0.12 14.05 16 3 H 0.00 -0.14 6.91 -2.39 -0.02 -0.15 16 4 C -0.53 -28.88 7.95 25.60 0.20 -28.68 16 5 H 0.07 3.53 7.43 -2.91 -0.02 3.51 16 6 C 0.01 0.56 5.30 84.65 0.45 1.01 16 7 N -0.92 -54.26 11.32 21.44 0.24 -54.02 16 8 Si 0.97 42.79 29.54 68.60 2.03 44.82 16 9 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 12 N -0.59 -25.13 2.75 -826.79 -2.28 -27.40 16 13 C 0.07 1.92 8.92 127.77 1.14 3.06 16 14 C 0.49 21.94 6.93 87.66 0.61 22.55 16 15 O -0.60 -35.39 15.90 15.25 0.24 -35.14 16 16 C 0.06 1.88 2.79 30.35 0.08 1.97 16 17 H 0.14 2.76 7.79 -2.39 -0.02 2.74 16 18 C -0.14 -2.79 5.72 31.61 0.18 -2.61 16 19 C -0.13 -1.91 5.54 31.61 0.17 -1.73 16 20 C 0.05 1.07 2.78 30.35 0.08 1.15 16 21 H 0.14 1.73 7.91 -2.39 -0.02 1.71 16 22 C 0.51 13.92 7.03 87.66 0.62 14.54 16 23 O -0.58 -23.34 16.02 15.32 0.25 -23.10 16 24 N -0.61 -10.72 3.01 -816.47 -2.46 -13.18 16 25 C 0.06 0.42 6.26 86.50 0.54 0.97 16 26 C 0.04 0.29 7.00 72.22 0.51 0.80 16 27 O -0.39 -5.06 10.74 -148.98 -1.60 -6.66 16 28 C 0.06 0.72 6.99 72.09 0.50 1.22 16 29 C 0.07 1.23 6.64 86.37 0.57 1.81 16 30 O -0.37 -13.26 10.18 -121.29 -1.23 -14.49 16 31 H 0.05 2.36 7.67 -2.38 -0.02 2.34 16 32 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 3.66 6.07 -2.39 -0.01 3.65 16 34 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 35 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.08 2.31 7.11 -2.39 -0.02 2.30 16 37 H 0.10 1.84 4.75 -2.38 -0.01 1.82 16 38 H 0.05 1.51 7.86 -2.39 -0.02 1.49 16 39 H 0.14 1.47 6.66 -2.39 -0.02 1.45 16 40 H 0.15 0.35 6.52 -2.38 -0.02 0.34 16 41 H 0.07 1.22 7.86 -2.39 -0.02 1.21 16 42 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.12 0.26 4.02 -2.39 -0.01 0.25 16 44 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.14 0.16 8.14 -2.39 -0.02 0.14 16 46 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.08 1.73 7.08 -2.39 -0.02 1.71 16 49 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -96.03 381.30 2.58 -93.46 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.96 Total: 11.45 kcal Atomic # 6 Polarization: 17.84 SS G_CDS: 6.43 Total: 24.27 kcal Atomic # 7 Polarization: -90.11 SS G_CDS: -4.49 Total: -94.60 kcal Atomic # 8 Polarization: -77.05 SS G_CDS: -2.35 Total: -79.40 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -96.03 2.58 -93.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354666467.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.665 kcal (2) G-P(sol) polarization free energy of solvation -96.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds