Wall clock time and date at job start Tue Mar 31 2020 23:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47089 * 2 1 4 4 C 1.50701 * 109.46844 * 119.99364 * 2 1 3 5 5 H 1.08007 * 119.99342 * 120.00487 * 4 2 1 6 6 C 1.37869 * 120.00341 * 300.00480 * 4 2 1 7 7 N 1.31519 * 120.00236 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00275 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47076 * 59.99544 * 8 6 4 10 10 H 1.48496 * 109.47608 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47022 * 300.00066 * 8 6 4 12 12 N 1.46499 * 109.47264 * 240.00022 * 2 1 3 13 13 C 1.46506 * 119.99537 * 299.99724 * 12 2 1 14 14 C 1.34777 * 120.00199 * 120.00374 * 12 2 1 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 12 2 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 12 2 17 17 H 1.09001 * 110.32975 * 56.97097 * 16 14 12 18 18 C 1.54479 * 110.37050 * 294.72046 * 16 14 12 19 19 C 1.54505 * 104.06422 * 217.19144 * 18 16 14 20 20 C 1.54480 * 104.05995 * 0.02562 * 19 18 16 21 21 H 1.09004 * 110.36828 * 265.14750 * 20 19 18 22 22 C 1.50705 * 110.37438 * 142.92447 * 20 19 18 23 23 O 1.21277 * 119.99754 * 245.00447 * 22 20 19 24 24 N 1.34771 * 119.99958 * 64.99405 * 22 20 19 25 25 C 1.47149 * 120.98418 * 359.72341 * 24 22 20 26 26 C 1.53708 * 108.16287 * 129.43265 * 25 24 22 27 27 O 1.42960 * 109.14902 * 52.53572 * 26 25 24 28 28 C 1.42959 * 114.16968 * 297.28933 * 27 26 25 29 29 C 1.47150 * 120.98043 * 180.02562 * 24 22 20 30 30 O 1.44420 * 110.36921 * 179.34422 * 16 14 12 31 31 H 1.08998 * 109.47544 * 300.00530 * 1 2 3 32 32 H 1.09007 * 109.46721 * 60.00439 * 1 2 3 33 33 H 1.08995 * 109.47131 * 180.02562 * 1 2 3 34 34 H 0.96992 * 119.99953 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.46921 * 269.99744 * 13 12 2 36 36 H 1.08994 * 109.46996 * 30.00327 * 13 12 2 37 37 H 1.09001 * 109.46578 * 150.00190 * 13 12 2 38 38 H 1.09003 * 110.51007 * 335.83910 * 18 16 14 39 39 H 1.08998 * 110.51064 * 98.40507 * 18 16 14 40 40 H 1.08999 * 110.51316 * 118.64224 * 19 18 16 41 41 H 1.09002 * 110.51127 * 241.35644 * 19 18 16 42 42 H 1.09007 * 109.68483 * 249.20747 * 25 24 22 43 43 H 1.08992 * 109.68335 * 9.76111 * 25 24 22 44 44 H 1.09005 * 109.65626 * 292.56964 * 26 25 24 45 45 H 1.09003 * 109.48955 * 172.40051 * 26 25 24 46 46 H 1.08998 * 109.51065 * 302.66215 * 28 27 26 47 47 H 1.08997 * 109.55554 * 182.52485 * 28 27 26 48 48 H 1.08999 * 109.68401 * 350.23906 * 29 24 22 49 49 H 1.09003 * 109.68542 * 110.79313 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4827 7 7 0.9434 0.8303 2.6034 8 14 2.3211 -1.1201 4.0081 9 1 3.8062 -1.1207 4.0083 10 1 1.8267 -0.4197 5.2205 11 1 1.8256 -2.5200 4.0079 12 7 2.0184 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 6 2.7933 -0.0356 -2.0833 15 8 3.0859 1.1256 -1.8915 16 6 3.2905 -0.7443 -3.3169 17 1 2.4519 -1.1354 -3.8929 18 6 4.2556 -1.8864 -2.9287 19 6 5.3324 -1.8608 -4.0364 20 6 4.8909 -0.7058 -4.9624 21 1 4.2985 -1.0905 -5.7926 22 6 6.0934 0.0414 -5.4790 23 8 6.2688 1.1994 -5.1645 24 7 6.9738 -0.5774 -6.2904 25 6 6.7854 -1.9836 -6.6807 26 6 6.9054 -2.0766 -8.2103 27 8 8.1285 -1.4622 -8.6228 28 6 8.2114 -0.0661 -8.3264 29 6 8.1554 0.1313 -6.8069 30 8 4.0846 0.1510 -4.1252 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0276 0.0005 34 1 0.7093 1.1619 3.4843 35 1 2.4158 -2.7377 -0.9715 36 1 0.6905 -2.3002 -0.9845 37 1 1.6238 -2.2853 -2.5001 38 1 4.7048 -1.6923 -1.9547 39 1 3.7328 -2.8428 -2.9233 40 1 6.3140 -1.6540 -3.6101 41 1 5.3426 -2.8049 -4.5810 42 1 7.5516 -2.6008 -6.2114 43 1 5.7979 -2.3224 -6.3675 44 1 6.0645 -1.5625 -8.6760 45 1 6.9042 -3.1240 -8.5122 46 1 7.3752 0.4552 -8.7925 47 1 9.1497 0.3335 -8.7111 48 1 8.0756 1.1939 -6.5773 49 1 9.0571 -0.2767 -6.3501 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376913647.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:17 Heat of formation + Delta-G solvation = -135.452794 kcal Electronic energy + Delta-G solvation = -31002.505353 eV Core-core repulsion = 26737.836326 eV Total energy + Delta-G solvation = -4264.669027 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.01594 -39.85688 -38.67367 -37.70653 -35.32155 -35.17280 -33.05215 -32.42633 -31.83478 -30.51395 -29.06412 -27.99579 -26.24648 -25.27047 -24.97213 -24.28067 -22.60044 -21.73131 -20.95902 -19.77184 -18.64017 -17.72735 -17.03261 -16.84000 -16.65995 -16.36936 -16.20088 -15.69231 -15.58038 -15.40619 -14.94919 -14.91978 -14.58872 -14.25287 -14.00451 -13.88536 -13.42290 -13.18570 -12.98712 -12.66463 -12.41850 -12.32019 -12.20935 -11.87990 -11.84795 -11.67788 -11.56058 -11.37061 -11.19186 -11.06675 -10.99481 -10.82091 -10.71399 -10.63588 -10.29286 -10.21042 -10.16326 -9.72824 -9.18765 -8.97440 -8.83820 -8.41918 -7.61474 -6.06751 -4.15120 2.29000 2.34411 3.26705 3.28268 3.30411 3.33179 3.33689 3.43603 3.95199 4.15901 4.20408 4.36077 4.41330 4.46107 4.55148 4.57284 4.69345 4.75127 4.83567 4.87480 4.95749 5.04678 5.11151 5.21535 5.22702 5.25261 5.30251 5.34652 5.46122 5.50870 5.63392 5.69514 5.95316 5.96976 6.01202 6.23180 6.51404 6.57441 6.76516 6.82140 6.94508 7.05073 7.42656 7.51549 7.70783 7.89798 8.01639 8.18888 8.49101 8.83150 9.03914 9.51220 10.98619 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023793 B = 0.002350 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.510614 B =11909.581525 C =11946.747473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.259 3.741 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.590 5.590 13 C 0.084 3.916 14 C 0.508 3.492 15 O -0.526 6.526 16 C 0.056 3.944 17 H 0.092 0.908 18 C -0.142 4.142 19 C -0.143 4.143 20 C 0.055 3.945 21 H 0.094 0.906 22 C 0.523 3.477 23 O -0.504 6.504 24 N -0.619 5.619 25 C 0.069 3.931 26 C 0.046 3.954 27 O -0.380 6.380 28 C 0.048 3.952 29 C 0.078 3.922 30 O -0.312 6.312 31 H 0.094 0.906 32 H 0.012 0.988 33 H 0.030 0.970 34 H 0.264 0.736 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.058 0.942 45 H 0.108 0.892 46 H 0.057 0.943 47 H 0.108 0.892 48 H 0.103 0.897 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.793 -12.166 -22.188 27.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.324 5.324 13 C -0.060 4.060 14 C 0.293 3.707 15 O -0.402 6.402 16 C -0.006 4.006 17 H 0.110 0.890 18 C -0.180 4.180 19 C -0.181 4.181 20 C -0.007 4.007 21 H 0.112 0.888 22 C 0.310 3.690 23 O -0.377 6.377 24 N -0.357 5.357 25 C -0.055 4.055 26 C -0.032 4.032 27 O -0.298 6.298 28 C -0.029 4.029 29 C -0.044 4.044 30 O -0.229 6.229 31 H 0.113 0.887 32 H 0.031 0.969 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.115 0.885 44 H 0.076 0.924 45 H 0.126 0.874 46 H 0.076 0.924 47 H 0.126 0.874 48 H 0.122 0.878 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.067 -10.597 -21.802 26.248 hybrid contribution 0.041 -0.772 1.007 1.269 sum 10.108 -11.369 -20.795 25.766 Atomic orbital electron populations 1.22098 0.98122 0.99360 1.00965 1.18964 0.90885 0.94584 0.79659 0.91845 1.21254 1.31939 1.13000 0.90242 0.92336 1.24896 0.94963 0.94984 0.98962 1.69868 1.36260 1.22504 1.23897 0.86549 0.79239 0.79504 0.82028 1.20265 1.21165 1.20255 1.48168 1.48968 1.11659 1.23581 1.21651 1.01892 0.83367 0.99059 1.19834 0.79833 0.87215 0.83836 1.90714 1.56833 1.16610 1.76009 1.23015 0.94886 0.90026 0.92637 0.89013 1.22964 0.96016 0.98697 1.00303 1.23018 1.00852 0.97547 0.96672 1.22827 0.91586 0.90815 0.95447 0.88811 1.20291 0.83428 0.87112 0.78144 1.90776 1.74521 1.16603 1.55750 1.48031 1.25244 1.12664 1.49802 1.22681 1.03770 0.82526 0.96487 1.23087 0.87526 0.99527 0.93023 1.87971 1.37912 1.22636 1.81263 1.23020 1.03233 0.82495 0.94160 1.22303 0.87770 0.99997 0.94375 1.89439 1.54581 1.26577 1.52264 0.88724 0.96897 0.95062 0.92593 0.93099 0.90646 0.93150 0.89306 0.88994 0.89932 0.89282 0.89956 0.88473 0.92378 0.87407 0.92441 0.87416 0.87843 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 8.95 37.16 0.33 -3.18 16 2 C 0.26 6.66 2.64 -69.08 -0.18 6.48 16 3 H 0.06 1.93 6.90 -51.93 -0.36 1.57 16 4 C -0.53 -14.16 8.37 -34.44 -0.29 -14.45 16 5 H 0.06 1.53 7.65 -52.48 -0.40 1.13 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.28 11.32 55.43 0.63 -24.65 16 8 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 12 N -0.59 -12.51 2.75 -175.26 -0.48 -12.99 16 13 C 0.08 1.31 8.31 59.85 0.50 1.81 16 14 C 0.51 11.04 7.00 -10.98 -0.08 10.96 16 15 O -0.53 -14.33 15.88 -13.66 -0.22 -14.54 16 16 C 0.06 0.88 2.79 -27.11 -0.08 0.80 16 17 H 0.09 1.15 7.28 -51.93 -0.38 0.77 16 18 C -0.14 -1.70 5.49 -25.17 -0.14 -1.84 16 19 C -0.14 -1.37 5.55 -25.16 -0.14 -1.51 16 20 C 0.05 0.67 2.76 -27.10 -0.07 0.59 16 21 H 0.09 0.81 7.55 -51.93 -0.39 0.42 16 22 C 0.52 7.12 7.03 -10.99 -0.08 7.05 16 23 O -0.50 -9.49 16.03 -13.59 -0.22 -9.71 16 24 N -0.62 -5.90 3.01 -172.00 -0.52 -6.42 16 25 C 0.07 0.39 5.87 -3.32 -0.02 0.37 16 26 C 0.05 0.24 7.00 37.53 0.26 0.51 16 27 O -0.38 -2.89 10.74 -35.23 -0.38 -3.27 16 28 C 0.05 0.33 6.99 37.33 0.26 0.59 16 29 C 0.08 0.67 6.64 -3.51 -0.02 0.64 16 30 O -0.31 -5.63 10.18 -64.20 -0.65 -6.28 16 31 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 32 H 0.01 0.27 8.14 -51.92 -0.42 -0.15 16 33 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.05 0.75 8.00 -51.93 -0.42 0.33 16 36 H 0.07 1.20 6.43 -51.93 -0.33 0.87 16 37 H 0.05 0.58 5.98 -51.93 -0.31 0.27 16 38 H 0.09 1.29 7.86 -51.93 -0.41 0.89 16 39 H 0.09 0.80 7.29 -51.93 -0.38 0.42 16 40 H 0.08 0.87 7.87 -51.93 -0.41 0.46 16 41 H 0.09 0.48 6.90 -51.93 -0.36 0.12 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.10 0.39 4.70 -51.93 -0.24 0.15 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.10 1.04 7.08 -51.93 -0.37 0.67 16 49 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 380.98 15.07 5.74 5.74 Total: -1.00 -38.13 380.98 -8.47 -46.60 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -7.51 Total: -1.00 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 0.16 Total: 10.50 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: -0.37 Total: -44.06 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -1.47 Total: -33.81 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.13 -8.47 -46.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376913647.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.852 kcal (2) G-P(sol) polarization free energy of solvation -38.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds