Wall clock time and date at job start Tue Mar 31 2020 23:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.49840 * 2 1 4 4 C 1.53039 * 109.49776 * 120.10055 * 2 1 3 5 5 C 1.53037 * 109.53886 * 181.31713 * 4 2 1 6 6 H 1.08997 * 109.49879 * 58.58311 * 5 4 2 7 7 C 1.50700 * 109.52735 * 178.66440 * 5 4 2 8 8 O 1.20829 * 119.99699 * 359.92478 * 7 5 4 9 9 O 1.34232 * 120.00429 * 179.91349 * 7 5 4 10 10 C 1.53192 * 109.31078 * 298.63292 * 5 4 2 11 11 N 1.46923 * 108.77624 * 54.63921 * 10 5 4 12 12 C 1.34777 * 120.63673 * 126.37084 * 11 10 5 13 13 O 1.21350 * 119.99536 * 351.35562 * 12 11 10 14 14 C 1.49444 * 120.00016 * 171.35609 * 12 11 10 15 15 O 1.21347 * 120.00439 * 353.22705 * 14 12 11 16 16 N 1.34784 * 119.99556 * 173.22611 * 14 12 11 17 17 C 1.46502 * 119.99775 * 179.97438 * 16 14 12 18 18 C 1.53001 * 109.46946 * 180.02562 * 17 16 14 19 19 C 1.52998 * 109.47081 * 299.99841 * 18 17 16 20 20 C 1.52990 * 109.47160 * 60.00267 * 18 17 16 21 21 C 1.50699 * 109.46798 * 180.02562 * 18 17 16 22 22 H 1.08007 * 120.00268 * 359.97438 * 21 18 17 23 23 C 1.37877 * 119.99963 * 180.02562 * 21 18 17 24 24 N 1.31514 * 120.00020 * 359.97438 * 23 21 18 25 25 Si 1.86797 * 120.00229 * 179.97438 * 23 21 18 26 26 H 1.48496 * 109.47234 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47081 * 119.99926 * 25 23 21 28 28 H 1.48503 * 109.47412 * 239.99949 * 25 23 21 29 29 C 1.46935 * 118.73360 * 306.38659 * 11 10 5 30 30 H 1.09007 * 109.47363 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47306 * 300.06346 * 1 2 3 32 32 H 1.09003 * 109.47469 * 60.06298 * 1 2 3 33 33 H 1.09001 * 109.46346 * 61.29702 * 4 2 1 34 34 H 1.09003 * 109.46201 * 301.33538 * 4 2 1 35 35 H 0.96692 * 117.00025 * 180.02562 * 9 7 5 36 36 H 1.09010 * 109.58523 * 174.42131 * 10 5 4 37 37 H 1.08994 * 109.58898 * 294.70497 * 10 5 4 38 38 H 0.96995 * 119.99868 * 0.02562 * 16 14 12 39 39 H 1.08998 * 109.47388 * 300.00522 * 17 16 14 40 40 H 1.08999 * 109.47129 * 60.00217 * 17 16 14 41 41 H 1.09004 * 109.47103 * 60.00304 * 19 18 17 42 42 H 1.08996 * 109.47212 * 180.02562 * 19 18 17 43 43 H 1.08999 * 109.47263 * 300.00171 * 19 18 17 44 44 H 1.08999 * 109.47686 * 59.99892 * 20 18 17 45 45 H 1.09002 * 109.47276 * 179.97438 * 20 18 17 46 46 H 1.09004 * 109.47012 * 299.99689 * 20 18 17 47 47 H 0.97003 * 120.00419 * 180.02562 * 24 23 21 48 48 H 1.09001 * 109.58213 * 173.39764 * 29 11 10 49 49 H 1.08999 * 109.58465 * 293.68048 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7235 1.2481 5 6 3.5708 -0.6954 1.2658 6 1 3.9158 0.3384 1.2542 7 6 4.0728 -1.3792 2.5113 8 8 3.2875 -1.8409 3.3052 9 8 5.3921 -1.4757 2.7388 10 6 4.1052 -1.4267 0.0303 11 7 3.5046 -0.8287 -1.1698 12 6 4.2811 -0.3849 -2.1781 13 8 5.4853 -0.3315 -2.0381 14 6 3.6591 0.0413 -3.4683 15 8 2.4717 -0.1263 -3.6541 16 7 4.4170 0.6120 -4.4257 17 6 3.8074 1.0294 -5.6908 18 6 4.8786 1.6420 -6.5954 19 6 5.4974 2.8574 -5.9020 20 6 5.9673 0.6035 -6.8721 21 6 4.2513 2.0719 -7.8964 22 1 3.1945 1.9227 -8.0618 23 6 5.0268 2.6548 -8.8762 24 7 6.3138 2.8361 -8.6751 25 14 4.2495 3.1870 -10.4892 26 1 2.7980 2.8744 -10.4662 27 1 4.4387 4.6487 -10.6713 28 1 4.8940 2.4607 -11.6128 29 6 2.0412 -0.7234 -1.2498 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5148 0.8894 32 1 -0.3634 0.5129 -0.8906 33 1 1.6967 -1.7577 1.2347 34 1 1.6582 -0.2252 2.1389 35 1 5.6660 -1.9232 3.5510 36 1 5.1896 -1.3246 -0.0142 37 1 3.8396 -2.4823 0.0871 38 1 5.3662 0.7456 -4.2773 39 1 3.3668 0.1635 -6.1849 40 1 3.0314 1.7690 -5.4936 41 1 5.9510 2.5468 -4.9607 42 1 6.2601 3.2941 -6.5466 43 1 4.7217 3.5973 -5.7048 44 1 5.5265 -0.2624 -7.3661 45 1 6.7302 1.0398 -7.5169 46 1 6.4209 0.2929 -5.9308 47 1 6.8593 3.2465 -9.3642 48 1 1.7637 -0.1573 -2.1389 49 1 1.6054 -1.7212 -1.3011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422707652.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:32 Heat of formation + Delta-G solvation = -161.540907 kcal Electronic energy + Delta-G solvation = -30685.224786 eV Core-core repulsion = 26419.424493 eV Total energy + Delta-G solvation = -4265.800293 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.26999 -40.48302 -38.78196 -37.81467 -36.61069 -36.45459 -34.00337 -33.38347 -32.76615 -30.94328 -27.32271 -26.79133 -25.75917 -25.73679 -25.37700 -24.90605 -22.51582 -21.39100 -20.49437 -19.81878 -18.87544 -18.42186 -17.75750 -17.12295 -16.57803 -16.42522 -16.03365 -15.75932 -15.46681 -14.95414 -14.81989 -14.57881 -14.46843 -14.28382 -13.74957 -13.68973 -13.25404 -13.04201 -12.95837 -12.77970 -12.51714 -12.31912 -12.19410 -11.94298 -11.70431 -11.54436 -11.44354 -11.23933 -11.12405 -11.09195 -10.95481 -10.92995 -10.79330 -10.67777 -10.43601 -10.22710 -9.69423 -9.47137 -9.09898 -8.96660 -8.82057 -8.65371 -8.40819 -6.05762 -4.16663 1.52465 1.73709 2.30114 2.68623 3.24923 3.31915 3.33873 3.37446 3.63332 4.14065 4.32066 4.36171 4.44955 4.56544 4.64778 4.75945 4.99319 5.10771 5.17956 5.21128 5.26358 5.37097 5.46124 5.49576 5.63613 5.70654 5.88240 5.90956 6.04895 6.05719 6.08246 6.17044 6.18283 6.42662 6.62948 6.80775 6.81229 6.89065 6.95727 6.96449 7.29261 7.47787 7.51143 7.51463 7.66105 7.87711 7.96768 8.08445 8.25644 8.35868 8.83848 9.49578 10.95679 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022576 B = 0.002339 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.953625 B =11968.824653 C =12823.863008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.107 4.107 3 H 0.077 0.923 4 C -0.101 4.101 5 C -0.095 4.095 6 H 0.116 0.884 7 C 0.489 3.511 8 O -0.512 6.512 9 O -0.512 6.512 10 C 0.119 3.881 11 N -0.587 5.587 12 C 0.511 3.489 13 O -0.517 6.517 14 C 0.498 3.502 15 O -0.525 6.525 16 N -0.676 5.676 17 C 0.127 3.873 18 C 0.056 3.944 19 C -0.134 4.134 20 C -0.134 4.134 21 C -0.507 4.507 22 H 0.059 0.941 23 C 0.066 3.934 24 N -0.884 5.884 25 Si 0.894 3.106 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.284 1.284 29 C 0.070 3.930 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.411 0.589 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.412 0.588 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.008 0.992 42 H 0.087 0.913 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.087 0.913 46 H 0.009 0.991 47 H 0.260 0.740 48 H 0.149 0.851 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.325 -7.064 20.284 22.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.126 4.126 3 H 0.096 0.904 4 C -0.139 4.139 5 C -0.115 4.115 6 H 0.134 0.866 7 C 0.330 3.670 8 O -0.399 6.399 9 O -0.323 6.323 10 C -0.004 4.004 11 N -0.321 5.321 12 C 0.294 3.706 13 O -0.392 6.392 14 C 0.279 3.721 15 O -0.405 6.405 16 N -0.326 5.326 17 C 0.005 3.995 18 C 0.055 3.945 19 C -0.192 4.192 20 C -0.192 4.192 21 C -0.545 4.545 22 H 0.077 0.923 23 C -0.135 4.135 24 N -0.522 5.522 25 Si 0.722 3.278 26 H -0.197 1.197 27 H -0.210 1.210 28 H -0.211 1.211 29 C -0.051 4.051 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.270 0.730 36 H 0.127 0.873 37 H 0.095 0.905 38 H 0.249 0.751 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.027 0.973 42 H 0.106 0.894 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.106 0.894 46 H 0.028 0.972 47 H 0.070 0.930 48 H 0.166 0.834 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.659 -6.993 19.924 21.861 hybrid contribution 0.282 -0.018 -0.034 0.284 sum -5.378 -7.011 19.890 21.765 Atomic orbital electron populations 1.21710 0.93535 1.02356 1.02405 1.21554 0.96772 1.00136 0.94120 0.90449 1.21577 0.90871 1.02528 0.98903 1.21454 0.98144 1.01782 0.90150 0.86626 1.23261 0.80000 0.76331 0.87411 1.90731 1.56926 1.44959 1.47318 1.84577 1.26090 1.73863 1.47816 1.21521 1.00661 0.96242 0.81939 1.47857 1.08089 1.59567 1.16583 1.20461 0.86798 0.78131 0.85183 1.90759 1.14207 1.52569 1.81663 1.19902 0.86980 0.80123 0.85140 1.90447 1.14785 1.56107 1.79141 1.46273 1.13504 1.56681 1.16183 1.21985 0.97585 0.98886 0.81011 1.18383 0.91088 0.92179 0.92832 1.21863 1.01227 0.98905 0.97174 1.21865 1.00930 0.97901 0.98525 1.20979 0.95040 1.39823 0.98706 0.92274 1.24885 0.94822 0.95400 0.98404 1.69814 1.04907 1.43673 1.33843 0.86503 0.79548 0.78235 0.83515 1.19749 1.21048 1.21053 1.23071 0.77318 1.02935 1.01764 0.92303 0.92281 0.91695 0.90582 0.90524 0.72993 0.87328 0.90511 0.75089 0.91849 0.91822 0.97307 0.89410 0.95313 0.95314 0.89410 0.97243 0.92965 0.83402 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.20 37.16 0.34 -0.70 16 2 C -0.11 -0.90 2.87 -90.50 -0.26 -1.16 16 3 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.10 -0.82 3.75 -26.69 -0.10 -0.92 16 5 C -0.10 -0.81 2.78 -91.65 -0.25 -1.06 16 6 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 7 C 0.49 4.28 7.63 36.01 0.27 4.56 16 8 O -0.51 -5.77 16.74 -18.75 -0.31 -6.09 16 9 O -0.51 -3.53 13.35 -39.26 -0.52 -4.06 16 10 C 0.12 1.16 5.66 -3.71 -0.02 1.14 16 11 N -0.59 -6.92 2.97 -173.27 -0.52 -7.43 16 12 C 0.51 7.56 7.73 -11.59 -0.09 7.47 16 13 O -0.52 -8.59 15.93 5.50 0.09 -8.50 16 14 C 0.50 8.17 7.74 -11.58 -0.09 8.08 16 15 O -0.52 -9.00 13.18 5.50 0.07 -8.93 16 16 N -0.68 -11.88 4.95 -60.73 -0.30 -12.18 16 17 C 0.13 2.52 4.50 -4.04 -0.02 2.51 16 18 C 0.06 1.26 0.50 -155.67 -0.08 1.18 16 19 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 20 C -0.13 -3.01 8.08 37.15 0.30 -2.71 16 21 C -0.51 -12.82 8.01 -34.44 -0.28 -13.09 16 22 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 23 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 24 N -0.88 -23.20 9.35 55.43 0.52 -22.68 16 25 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 C 0.07 0.74 5.27 -3.71 -0.02 0.72 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.64 8.13 -51.93 -0.42 0.21 16 34 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 35 H 0.41 1.08 9.10 45.56 0.41 1.50 16 36 H 0.11 1.16 7.01 -51.92 -0.36 0.80 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.41 7.20 5.65 -40.82 -0.23 6.97 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 42 H 0.09 2.16 6.07 -51.93 -0.32 1.85 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.09 2.17 6.07 -51.93 -0.32 1.86 16 46 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 47 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 48 H 0.15 1.88 4.32 -54.76 -0.24 1.65 16 49 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 388.03 15.07 5.85 5.85 Total: -1.00 -29.25 388.03 -7.02 -36.28 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.79 Total: 7.55 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -0.08 Total: 4.96 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: -0.30 Total: -42.29 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.68 Total: -27.57 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.25 -7.02 -36.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422707652.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.264 kcal (2) G-P(sol) polarization free energy of solvation -29.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds