Wall clock time and date at job start Tue Mar 31 2020 23:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.52360 * 2 1 4 4 C 1.53191 * 109.50130 * 239.91376 * 2 1 3 5 5 N 1.46924 * 108.77880 * 185.41251 * 4 2 1 6 6 C 1.34776 * 120.63186 * 233.58662 * 5 4 2 7 7 O 1.21343 * 120.00129 * 7.08117 * 6 5 4 8 8 C 1.49453 * 119.99913 * 187.07754 * 6 5 4 9 9 O 1.21351 * 119.99921 * 6.79454 * 8 6 5 10 10 N 1.34770 * 119.99847 * 186.78880 * 8 6 5 11 11 C 1.46502 * 119.99929 * 180.02562 * 10 8 6 12 12 C 1.53002 * 109.47393 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.47304 * 59.99708 * 12 11 10 14 14 C 1.53010 * 109.46887 * 300.00121 * 12 11 10 15 15 C 1.50696 * 109.47505 * 180.02562 * 12 11 10 16 16 H 1.08004 * 119.99892 * 0.46120 * 15 12 11 17 17 C 1.37874 * 120.00137 * 180.45984 * 15 12 11 18 18 N 1.31518 * 120.00223 * 1.44887 * 17 15 12 19 19 Si 1.86804 * 119.99930 * 181.44703 * 17 15 12 20 20 H 1.48499 * 109.46897 * 180.02562 * 19 17 15 21 21 H 1.48504 * 109.47102 * 300.00064 * 19 17 15 22 22 H 1.48496 * 109.47144 * 60.00131 * 19 17 15 23 23 C 1.46930 * 118.73579 * 53.85741 * 5 4 2 24 24 C 1.53625 * 108.54463 * 306.09651 * 23 5 4 25 25 C 1.53040 * 109.24228 * 54.85848 * 24 23 5 26 26 H 1.08994 * 109.45836 * 58.52918 * 25 24 23 27 27 C 1.50698 * 109.44871 * 178.49748 * 25 24 23 28 28 O 1.20819 * 119.99983 * 120.05583 * 27 25 24 29 29 O 1.34226 * 119.99913 * 300.05881 * 27 25 24 30 30 H 1.09002 * 109.47018 * 180.08470 * 1 2 3 31 31 H 1.09001 * 109.47587 * 300.08399 * 1 2 3 32 32 H 1.08999 * 109.47409 * 60.08808 * 1 2 3 33 33 H 1.08999 * 109.58626 * 65.62581 * 4 2 1 34 34 H 1.09005 * 109.58446 * 305.20042 * 4 2 1 35 35 H 0.96997 * 120.00435 * 0.02562 * 10 8 6 36 36 H 1.08994 * 109.47224 * 60.00517 * 11 10 8 37 37 H 1.09000 * 109.46928 * 300.00004 * 11 10 8 38 38 H 1.08998 * 109.46817 * 174.35445 * 13 12 11 39 39 H 1.09001 * 109.46798 * 294.35643 * 13 12 11 40 40 H 1.08997 * 109.46945 * 54.34964 * 13 12 11 41 41 H 1.09002 * 109.46651 * 305.37690 * 14 12 11 42 42 H 1.09004 * 109.47031 * 65.37156 * 14 12 11 43 43 H 1.08996 * 109.46995 * 185.37711 * 14 12 11 44 44 H 0.97000 * 119.99385 * 354.04017 * 18 17 15 45 45 H 1.09000 * 109.58438 * 65.93162 * 23 5 4 46 46 H 1.08997 * 109.58800 * 186.35273 * 23 5 4 47 47 H 1.09000 * 109.63196 * 294.86215 * 24 23 5 48 48 H 1.09001 * 109.45668 * 174.73970 * 24 23 5 49 49 H 0.96699 * 117.00482 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2495 5 7 3.5046 -0.8292 -1.1695 6 6 4.2811 -0.3865 -2.1782 7 8 3.7848 0.2193 -3.1050 8 6 5.7535 -0.6419 -2.1552 9 8 6.2329 -1.3513 -1.2953 10 7 6.5487 -0.0843 -3.0895 11 6 7.9920 -0.3350 -3.0673 12 6 8.6570 0.4099 -4.2266 13 6 8.3979 1.9111 -4.0838 14 6 8.0737 -0.0845 -5.5519 15 6 10.1415 0.1515 -4.2041 16 1 10.5671 -0.4868 -3.4439 17 6 10.9563 0.7299 -5.1541 18 7 10.4422 1.5299 -6.0626 19 14 12.7908 0.3774 -5.1507 20 1 13.4387 1.1152 -6.2647 21 1 13.3771 0.8174 -3.8591 22 1 13.0151 -1.0802 -5.3251 23 6 4.1050 -1.4317 0.0286 24 6 3.5708 -0.6948 1.2662 25 6 2.0407 -0.7230 1.2485 26 1 1.6967 -1.7571 1.2355 27 6 1.5119 -0.0333 2.4796 28 8 0.7999 0.9366 2.3699 29 8 1.8320 -0.4965 3.6981 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3634 0.5151 0.8892 32 1 -0.3634 0.5125 -0.8907 33 1 1.7638 -0.1581 -2.1388 34 1 1.6053 -1.7218 -1.2978 35 1 6.1656 0.4831 -3.7767 36 1 8.1766 -1.4044 -3.1687 37 1 8.4075 0.0176 -2.1233 38 1 8.9536 2.4502 -4.8510 39 1 7.3323 2.1085 -4.2007 40 1 8.7230 2.2438 -3.0981 41 1 8.1732 -1.1684 -5.6107 42 1 7.0197 0.1872 -5.6089 43 1 8.6129 0.3753 -6.3801 44 1 9.4807 1.6453 -6.1188 45 1 3.8339 -2.4861 0.0823 46 1 5.1896 -1.3331 -0.0172 47 1 3.9158 0.3391 1.2541 48 1 3.9333 -1.1889 2.1676 49 1 1.4687 -0.0214 4.4579 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599940779.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:59 Heat of formation + Delta-G solvation = -148.889013 kcal Electronic energy + Delta-G solvation = -30729.997749 eV Core-core repulsion = 26464.746084 eV Total energy + Delta-G solvation = -4265.251665 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.35695 -40.58160 -38.86533 -37.74771 -36.99679 -36.53216 -34.29046 -33.43329 -32.45556 -30.65858 -27.63258 -27.49145 -26.19759 -26.09144 -24.92610 -23.32867 -22.74057 -22.16833 -20.54636 -19.85506 -18.98565 -18.44523 -17.88754 -17.28616 -16.90167 -16.62723 -16.16152 -15.91592 -15.46515 -15.14060 -14.69285 -14.49056 -14.30757 -14.05571 -13.77598 -13.72569 -13.40368 -13.12827 -12.88661 -12.81643 -12.69400 -12.48664 -12.27662 -12.17544 -11.78697 -11.60399 -11.51241 -11.36903 -11.33861 -11.09206 -11.01318 -10.84881 -10.67049 -10.64548 -10.57428 -10.11365 -9.95646 -9.63517 -9.14909 -8.99054 -8.74515 -8.50159 -8.34646 -6.29171 -4.16235 1.48990 1.78524 2.34555 2.60678 3.27719 3.41728 3.42078 3.58064 3.61184 4.05267 4.27189 4.44555 4.47984 4.52795 4.61867 4.88685 4.91420 4.98967 5.13897 5.22792 5.28022 5.28643 5.35822 5.47403 5.65842 5.70793 5.78305 5.84106 5.85564 5.90275 6.02798 6.13227 6.19912 6.24187 6.46245 6.53914 6.61351 6.69438 6.71828 6.92859 7.01369 7.04250 7.42886 7.46181 7.49610 7.59048 7.82457 8.08465 8.22081 8.33702 8.78682 9.54977 10.96131 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024243 B = 0.002238 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.684415 B =12510.144562 C =13018.860782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.088 4.088 3 H 0.085 0.915 4 C 0.113 3.887 5 N -0.589 5.589 6 C 0.510 3.490 7 O -0.520 6.520 8 C 0.499 3.501 9 O -0.524 6.524 10 N -0.679 5.679 11 C 0.135 3.865 12 C 0.041 3.959 13 C -0.150 4.150 14 C -0.148 4.148 15 C -0.587 4.587 16 H 0.053 0.947 17 C 0.027 3.973 18 N -0.916 5.916 19 Si 1.065 2.935 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.288 1.288 23 C 0.066 3.934 24 C -0.127 4.127 25 C -0.078 4.078 26 H 0.112 0.888 27 C 0.484 3.516 28 O -0.509 6.509 29 O -0.515 6.515 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.411 0.589 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.017 0.983 40 H 0.037 0.963 41 H 0.038 0.962 42 H 0.019 0.981 43 H 0.071 0.929 44 H 0.281 0.719 45 H 0.073 0.927 46 H 0.155 0.845 47 H 0.073 0.927 48 H 0.092 0.908 49 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.647 -5.657 15.299 24.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.108 4.108 3 H 0.104 0.896 4 C -0.009 4.009 5 N -0.323 5.323 6 C 0.293 3.707 7 O -0.396 6.396 8 C 0.280 3.720 9 O -0.404 6.404 10 N -0.329 5.329 11 C 0.013 3.987 12 C 0.041 3.959 13 C -0.208 4.208 14 C -0.206 4.206 15 C -0.625 4.625 16 H 0.071 0.929 17 C -0.177 4.177 18 N -0.556 5.556 19 Si 0.893 3.107 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.214 1.214 23 C -0.055 4.055 24 C -0.165 4.165 25 C -0.097 4.097 26 H 0.130 0.870 27 C 0.326 3.674 28 O -0.397 6.397 29 O -0.327 6.327 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.120 0.880 34 H 0.093 0.907 35 H 0.248 0.752 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.036 0.964 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.038 0.962 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.091 0.909 46 H 0.172 0.828 47 H 0.092 0.908 48 H 0.111 0.889 49 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -17.148 -5.354 14.241 22.924 hybrid contribution -2.069 0.079 1.110 2.349 sum -19.217 -5.275 15.351 25.154 Atomic orbital electron populations 1.22069 0.93415 1.02139 1.04207 1.21391 0.97016 1.00354 0.92024 0.89630 1.21807 0.78909 1.01230 0.98955 1.47967 1.06416 1.59561 1.18329 1.20375 0.88219 0.79427 0.82700 1.90749 1.75113 1.38912 1.34777 1.19986 0.87124 0.81808 0.83121 1.90399 1.75475 1.38714 1.35836 1.46259 1.09696 1.47740 1.29222 1.21854 0.75254 1.00648 1.00930 1.18551 0.96019 0.91518 0.89859 1.22098 0.97460 0.99302 1.01898 1.22093 0.97073 1.00203 1.01214 1.21717 0.90603 1.33962 1.16224 0.92881 1.25678 1.06215 0.93025 0.92822 1.70873 1.15907 1.33780 1.35063 0.83601 0.74741 0.76102 0.76214 1.20827 1.21470 1.21439 1.23119 1.04688 0.96281 0.81379 1.22076 0.91544 1.02832 1.00033 1.21203 0.97953 1.01210 0.89327 0.87026 1.23507 0.77053 0.82063 0.84733 1.90663 1.35397 1.26639 1.86993 1.84544 1.71510 1.59742 1.16905 0.92829 0.89700 0.91987 0.88040 0.90689 0.75216 0.91645 0.91629 0.90549 0.96414 0.94338 0.94244 0.96229 0.90988 0.90212 0.90902 0.82838 0.90844 0.88928 0.73172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 8.86 37.15 0.33 -0.93 16 2 C -0.09 -0.77 2.06 -90.50 -0.19 -0.95 16 3 H 0.09 0.91 8.13 -51.93 -0.42 0.48 16 4 C 0.11 1.07 5.72 -3.71 -0.02 1.05 16 5 N -0.59 -6.85 2.97 -173.01 -0.51 -7.36 16 6 C 0.51 7.56 7.74 -11.58 -0.09 7.47 16 7 O -0.52 -8.74 15.92 5.50 0.09 -8.65 16 8 C 0.50 8.16 7.76 -11.59 -0.09 8.07 16 9 O -0.52 -8.90 13.13 5.50 0.07 -8.82 16 10 N -0.68 -11.89 5.02 -60.73 -0.30 -12.19 16 11 C 0.13 2.69 4.50 -4.04 -0.02 2.67 16 12 C 0.04 0.93 0.50 -155.65 -0.08 0.85 16 13 C -0.15 -3.31 7.91 37.16 0.29 -3.01 16 14 C -0.15 -3.25 7.91 37.16 0.29 -2.95 16 15 C -0.59 -15.16 8.01 -34.44 -0.28 -15.44 16 16 H 0.05 1.38 7.74 -52.48 -0.41 0.97 16 17 C 0.03 0.71 5.12 -17.82 -0.09 0.62 16 18 N -0.92 -25.52 12.16 55.43 0.67 -24.85 16 19 Si 1.07 23.95 29.90 -169.99 -5.08 18.87 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 23 C 0.07 0.66 6.06 -3.48 -0.02 0.64 16 24 C -0.13 -1.03 5.31 -26.39 -0.14 -1.17 16 25 C -0.08 -0.59 2.14 -91.73 -0.20 -0.78 16 26 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 27 C 0.48 4.02 7.33 36.00 0.26 4.29 16 28 O -0.51 -5.59 14.33 -18.74 -0.27 -5.85 16 29 O -0.52 -3.15 13.30 -39.25 -0.52 -3.67 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.79 5.41 -51.93 -0.28 0.51 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.10 1.08 7.00 -51.93 -0.36 0.72 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.41 7.12 5.74 -40.82 -0.23 6.88 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.08 1.87 5.17 -51.93 -0.27 1.60 16 39 H 0.02 0.34 7.03 -51.93 -0.37 -0.03 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.02 0.37 7.02 -51.93 -0.36 0.01 16 43 H 0.07 1.74 5.26 -51.93 -0.27 1.47 16 44 H 0.28 7.60 3.50 -40.82 -0.14 7.46 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.16 1.89 4.20 -55.37 -0.23 1.66 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.09 0.63 8.08 -51.93 -0.42 0.21 16 49 H 0.41 0.91 9.10 45.56 0.41 1.33 16 LS Contribution 379.81 15.07 5.72 5.72 Total: -1.00 -30.84 379.81 -6.54 -37.38 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -6.38 Total: 9.00 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -0.03 Total: 0.43 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: -0.14 Total: -44.40 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.63 Total: -27.00 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -5.08 Total: 18.87 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.84 -6.54 -37.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599940779.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.509 kcal (2) G-P(sol) polarization free energy of solvation -30.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds