Wall clock time and date at job start Tue Mar 31 2020 23:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.52360 * 2 1 4 4 C 1.53191 * 109.50130 * 239.91376 * 2 1 3 5 5 N 1.46924 * 108.77880 * 185.41251 * 4 2 1 6 6 C 1.34776 * 120.63186 * 233.58662 * 5 4 2 7 7 O 1.21343 * 120.00129 * 7.08117 * 6 5 4 8 8 C 1.49453 * 119.99913 * 187.07754 * 6 5 4 9 9 O 1.21351 * 119.99921 * 6.79454 * 8 6 5 10 10 N 1.34770 * 119.99847 * 186.78880 * 8 6 5 11 11 C 1.46502 * 119.99929 * 180.02562 * 10 8 6 12 12 C 1.53002 * 109.47393 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.47304 * 59.99708 * 12 11 10 14 14 C 1.53010 * 109.46887 * 300.00121 * 12 11 10 15 15 C 1.50696 * 109.47505 * 180.02562 * 12 11 10 16 16 H 1.08004 * 119.99892 * 0.46120 * 15 12 11 17 17 C 1.37874 * 120.00137 * 180.45984 * 15 12 11 18 18 N 1.31518 * 120.00223 * 1.44887 * 17 15 12 19 19 Si 1.86804 * 119.99930 * 181.44703 * 17 15 12 20 20 H 1.48499 * 109.46897 * 180.02562 * 19 17 15 21 21 H 1.48504 * 109.47102 * 300.00064 * 19 17 15 22 22 H 1.48496 * 109.47144 * 60.00131 * 19 17 15 23 23 C 1.46930 * 118.73579 * 53.85741 * 5 4 2 24 24 C 1.53625 * 108.54463 * 306.09651 * 23 5 4 25 25 C 1.53040 * 109.24228 * 54.85848 * 24 23 5 26 26 H 1.08994 * 109.45836 * 58.52918 * 25 24 23 27 27 C 1.50698 * 109.44871 * 178.49748 * 25 24 23 28 28 O 1.20819 * 119.99983 * 120.05583 * 27 25 24 29 29 O 1.34226 * 119.99913 * 300.05881 * 27 25 24 30 30 H 1.09002 * 109.47018 * 180.08470 * 1 2 3 31 31 H 1.09001 * 109.47587 * 300.08399 * 1 2 3 32 32 H 1.08999 * 109.47409 * 60.08808 * 1 2 3 33 33 H 1.08999 * 109.58626 * 65.62581 * 4 2 1 34 34 H 1.09005 * 109.58446 * 305.20042 * 4 2 1 35 35 H 0.96997 * 120.00435 * 0.02562 * 10 8 6 36 36 H 1.08994 * 109.47224 * 60.00517 * 11 10 8 37 37 H 1.09000 * 109.46928 * 300.00004 * 11 10 8 38 38 H 1.08998 * 109.46817 * 174.35445 * 13 12 11 39 39 H 1.09001 * 109.46798 * 294.35643 * 13 12 11 40 40 H 1.08997 * 109.46945 * 54.34964 * 13 12 11 41 41 H 1.09002 * 109.46651 * 305.37690 * 14 12 11 42 42 H 1.09004 * 109.47031 * 65.37156 * 14 12 11 43 43 H 1.08996 * 109.46995 * 185.37711 * 14 12 11 44 44 H 0.97000 * 119.99385 * 354.04017 * 18 17 15 45 45 H 1.09000 * 109.58438 * 65.93162 * 23 5 4 46 46 H 1.08997 * 109.58800 * 186.35273 * 23 5 4 47 47 H 1.09000 * 109.63196 * 294.86215 * 24 23 5 48 48 H 1.09001 * 109.45668 * 174.73970 * 24 23 5 49 49 H 0.96699 * 117.00482 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2495 5 7 3.5046 -0.8292 -1.1695 6 6 4.2811 -0.3865 -2.1782 7 8 3.7848 0.2193 -3.1050 8 6 5.7535 -0.6419 -2.1552 9 8 6.2329 -1.3513 -1.2953 10 7 6.5487 -0.0843 -3.0895 11 6 7.9920 -0.3350 -3.0673 12 6 8.6570 0.4099 -4.2266 13 6 8.3979 1.9111 -4.0838 14 6 8.0737 -0.0845 -5.5519 15 6 10.1415 0.1515 -4.2041 16 1 10.5671 -0.4868 -3.4439 17 6 10.9563 0.7299 -5.1541 18 7 10.4422 1.5299 -6.0626 19 14 12.7908 0.3774 -5.1507 20 1 13.4387 1.1152 -6.2647 21 1 13.3771 0.8174 -3.8591 22 1 13.0151 -1.0802 -5.3251 23 6 4.1050 -1.4317 0.0286 24 6 3.5708 -0.6948 1.2662 25 6 2.0407 -0.7230 1.2485 26 1 1.6967 -1.7571 1.2355 27 6 1.5119 -0.0333 2.4796 28 8 0.7999 0.9366 2.3699 29 8 1.8320 -0.4965 3.6981 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3634 0.5151 0.8892 32 1 -0.3634 0.5125 -0.8907 33 1 1.7638 -0.1581 -2.1388 34 1 1.6053 -1.7218 -1.2978 35 1 6.1656 0.4831 -3.7767 36 1 8.1766 -1.4044 -3.1687 37 1 8.4075 0.0176 -2.1233 38 1 8.9536 2.4502 -4.8510 39 1 7.3323 2.1085 -4.2007 40 1 8.7230 2.2438 -3.0981 41 1 8.1732 -1.1684 -5.6107 42 1 7.0197 0.1872 -5.6089 43 1 8.6129 0.3753 -6.3801 44 1 9.4807 1.6453 -6.1188 45 1 3.8339 -2.4861 0.0823 46 1 5.1896 -1.3331 -0.0172 47 1 3.9158 0.3391 1.2541 48 1 3.9333 -1.1889 2.1676 49 1 1.4687 -0.0214 4.4579 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599940779.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:58 Heat of formation + Delta-G solvation = -169.473499 kcal Electronic energy + Delta-G solvation = -30730.890359 eV Core-core repulsion = 26464.746084 eV Total energy + Delta-G solvation = -4266.144276 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.27307 -41.49695 -40.04866 -38.73258 -38.60429 -37.17566 -35.59643 -34.60050 -33.17985 -32.47166 -28.72015 -28.23732 -27.89522 -27.74900 -26.58855 -24.44704 -23.50202 -23.03717 -21.59460 -20.85729 -20.68469 -19.25473 -19.02258 -18.30196 -18.16307 -17.80405 -17.26280 -16.79242 -16.66154 -16.24889 -15.77612 -15.61544 -15.56359 -15.24573 -14.94880 -14.71070 -14.58716 -14.45853 -14.32374 -14.20195 -13.67243 -13.37917 -13.27556 -13.23188 -13.00747 -12.90707 -12.78683 -12.60157 -12.51245 -12.41359 -12.31885 -12.04886 -11.90924 -11.88578 -11.73640 -11.60427 -11.42439 -11.30798 -10.49187 -10.40774 -10.28053 -10.13129 -9.89164 -8.35646 -6.23835 0.26377 1.15934 1.23548 1.59631 1.64801 1.83834 2.00362 2.11467 2.42964 2.64015 3.22654 3.27298 3.41893 3.60519 3.80730 3.89276 4.11646 4.18507 4.23578 4.31112 4.34477 4.44632 4.49953 4.58964 4.62489 4.63040 4.74029 4.80115 4.80135 4.82534 4.88539 4.95250 5.01573 5.05925 5.13994 5.19189 5.20341 5.22228 5.31517 5.43779 5.61159 5.70676 5.78063 5.88237 6.15140 6.17994 6.33044 6.62388 6.75460 6.87774 6.99330 7.53700 8.91087 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024243 B = 0.002238 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.684415 B =12510.144562 C =13018.860782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.083 4.083 3 H 0.059 0.941 4 C 0.113 3.887 5 N -0.578 5.578 6 C 0.510 3.490 7 O -0.546 6.546 8 C 0.500 3.500 9 O -0.530 6.530 10 N -0.682 5.682 11 C 0.152 3.848 12 C 0.034 3.966 13 C -0.140 4.140 14 C -0.138 4.138 15 C -0.598 4.598 16 H 0.046 0.954 17 C -0.017 4.017 18 N -0.941 5.941 19 Si 1.105 2.895 20 H -0.289 1.289 21 H -0.276 1.276 22 H -0.275 1.275 23 C 0.065 3.935 24 C -0.118 4.118 25 C -0.075 4.075 26 H 0.140 0.860 27 C 0.489 3.511 28 O -0.541 6.541 29 O -0.510 6.510 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.412 0.588 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.040 0.960 40 H 0.034 0.966 41 H 0.037 0.963 42 H 0.042 0.958 43 H 0.047 0.953 44 H 0.278 0.722 45 H 0.098 0.902 46 H 0.133 0.867 47 H 0.056 0.944 48 H 0.112 0.888 49 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.966 -7.287 16.959 27.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.102 4.102 3 H 0.078 0.922 4 C -0.009 4.009 5 N -0.311 5.311 6 C 0.292 3.708 7 O -0.424 6.424 8 C 0.282 3.718 9 O -0.409 6.409 10 N -0.333 5.333 11 C 0.030 3.970 12 C 0.033 3.967 13 C -0.198 4.198 14 C -0.196 4.196 15 C -0.637 4.637 16 H 0.065 0.935 17 C -0.217 4.217 18 N -0.583 5.583 19 Si 0.929 3.071 20 H -0.215 1.215 21 H -0.202 1.202 22 H -0.200 1.200 23 C -0.055 4.055 24 C -0.156 4.156 25 C -0.094 4.094 26 H 0.158 0.842 27 C 0.333 3.667 28 O -0.431 6.431 29 O -0.323 6.323 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.123 0.877 35 H 0.249 0.751 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.094 0.906 45 H 0.116 0.884 46 H 0.150 0.850 47 H 0.075 0.925 48 H 0.130 0.870 49 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -18.499 -7.013 15.974 25.427 hybrid contribution -1.732 0.552 0.727 1.958 sum -20.231 -6.461 16.701 27.017 Atomic orbital electron populations 1.22002 0.92526 1.03276 1.03465 1.21284 0.97626 0.98992 0.92343 0.92220 1.21993 0.77265 1.02797 0.98799 1.48103 1.07289 1.57936 1.17740 1.20042 0.87460 0.79897 0.83389 1.90742 1.75146 1.40476 1.36021 1.20297 0.87912 0.81210 0.82408 1.90434 1.76067 1.38670 1.35777 1.46091 1.08717 1.48547 1.29975 1.21414 0.76673 0.99620 0.99339 1.18555 0.94825 0.92116 0.91155 1.21957 0.98560 0.98624 1.00694 1.21951 0.98101 0.99739 0.99856 1.22055 0.92589 1.33371 1.15680 0.93524 1.26792 1.09563 0.92737 0.92597 1.70931 1.16014 1.35170 1.36180 0.83073 0.71079 0.76587 0.76404 1.21476 1.20181 1.20038 1.23139 1.03370 0.97817 0.81197 1.21991 0.92004 1.01818 0.99829 1.21206 0.97251 1.02437 0.88514 0.84215 1.23547 0.76343 0.81401 0.85446 1.90669 1.36971 1.28011 1.87498 1.84498 1.71201 1.59697 1.16932 0.90711 0.91085 0.92101 0.89373 0.87683 0.75078 0.92345 0.92365 0.93026 0.94071 0.94672 0.94422 0.93904 0.93374 0.90594 0.88373 0.85025 0.92498 0.86993 0.71149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 8.86 71.98 0.64 -1.49 16 2 C -0.08 -1.29 2.06 -10.72 -0.02 -1.31 16 3 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 4 C 0.11 1.88 5.72 86.36 0.49 2.37 16 5 N -0.58 -12.41 2.97 -819.64 -2.43 -14.84 16 6 C 0.51 14.65 7.74 87.27 0.68 15.33 16 7 O -0.55 -18.05 15.92 -3.22 -0.05 -18.10 16 8 C 0.50 15.98 7.76 87.27 0.68 16.66 16 9 O -0.53 -17.48 13.13 -3.25 -0.04 -17.52 16 10 N -0.68 -23.53 5.02 -464.41 -2.33 -25.86 16 11 C 0.15 6.05 4.50 86.38 0.39 6.44 16 12 C 0.03 1.55 0.50 -52.92 -0.03 1.52 16 13 C -0.14 -6.22 7.91 71.98 0.57 -5.65 16 14 C -0.14 -6.08 7.91 71.99 0.57 -5.51 16 15 C -0.60 -31.14 8.01 25.60 0.21 -30.93 16 16 H 0.05 2.43 7.74 -2.91 -0.02 2.40 16 17 C -0.02 -0.93 5.12 84.65 0.43 -0.50 16 18 N -0.94 -53.29 12.16 21.45 0.26 -53.03 16 19 Si 1.10 48.32 29.90 68.60 2.05 50.37 16 20 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 21 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 23 C 0.07 1.14 6.06 86.51 0.52 1.66 16 24 C -0.12 -1.64 5.31 30.82 0.16 -1.47 16 25 C -0.08 -0.92 2.14 -11.51 -0.02 -0.95 16 26 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 27 C 0.49 7.05 7.33 71.24 0.52 7.58 16 28 O -0.54 -11.27 14.33 21.99 0.32 -10.96 16 29 O -0.51 -4.80 13.30 -51.38 -0.68 -5.48 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 31 H 0.07 1.24 5.41 -2.39 -0.01 1.22 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.09 1.77 7.00 -2.39 -0.02 1.75 16 34 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.41 14.00 5.74 -92.71 -0.53 13.47 16 36 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.05 2.56 5.17 -2.39 -0.01 2.55 16 39 H 0.04 1.58 7.03 -2.39 -0.02 1.57 16 40 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.04 1.63 7.02 -2.39 -0.02 1.62 16 43 H 0.05 2.35 5.26 -2.39 -0.01 2.34 16 44 H 0.28 15.38 3.50 -92.71 -0.32 15.05 16 45 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.13 3.03 4.20 -56.80 -0.24 2.79 16 47 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.11 1.16 8.08 -2.39 -0.02 1.14 16 49 H 0.43 0.83 9.10 -74.06 -0.67 0.15 16 Total: -1.00 -67.05 379.81 2.88 -64.16 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.01 Total: 27.52 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 5.79 Total: 3.74 kcal Atomic # 7 Polarization: -89.23 SS G_CDS: -4.50 Total: -93.73 kcal Atomic # 8 Polarization: -51.60 SS G_CDS: -0.46 Total: -52.06 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.05 Total: 50.37 kcal Total: -67.05 2.88 -64.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599940779.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.311 kcal (2) G-P(sol) polarization free energy of solvation -67.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds