Wall clock time and date at job start Tue Mar 31 2020 23:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08992 * 109.49763 * 2 1 4 4 C 1.53189 * 109.49683 * 239.92829 * 2 1 3 5 5 N 1.46924 * 108.77585 * 294.68783 * 4 2 1 6 6 C 1.34779 * 120.63362 * 126.36998 * 5 4 2 7 7 O 1.21355 * 119.99805 * 1.95770 * 6 5 4 8 8 C 1.49445 * 120.00214 * 181.95762 * 6 5 4 9 9 O 1.21347 * 120.00405 * 353.07205 * 8 6 5 10 10 N 1.34783 * 120.00006 * 173.06921 * 8 6 5 11 11 C 1.46492 * 120.00034 * 180.02562 * 10 8 6 12 12 C 1.53002 * 109.47255 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.47221 * 59.99814 * 12 11 10 14 14 C 1.52996 * 109.46946 * 300.00080 * 12 11 10 15 15 C 1.50695 * 109.47381 * 179.97438 * 12 11 10 16 16 H 1.08004 * 120.00124 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00449 * 179.72495 * 15 12 11 18 18 N 1.31522 * 119.99667 * 0.27395 * 17 15 12 19 19 Si 1.86796 * 120.00309 * 180.27659 * 17 15 12 20 20 H 1.48498 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46992 * 119.99896 * 19 17 15 22 22 H 1.48501 * 109.47036 * 239.99637 * 19 17 15 23 23 C 1.46928 * 118.73897 * 306.63867 * 5 4 2 24 24 C 1.52760 * 109.00641 * 53.31368 * 23 5 4 25 25 C 1.53038 * 109.38405 * 305.58955 * 24 23 5 26 26 H 1.09005 * 109.44779 * 301.22618 * 25 24 23 27 27 C 1.50697 * 109.46326 * 181.26253 * 25 24 23 28 28 O 1.20828 * 119.99802 * 239.93109 * 27 25 24 29 29 O 1.34228 * 120.00185 * 59.92639 * 27 25 24 30 30 H 1.08996 * 109.47057 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46971 * 300.06825 * 1 2 3 32 32 H 1.08998 * 109.46842 * 60.06814 * 1 2 3 33 33 H 1.08997 * 109.58613 * 174.89683 * 4 2 1 34 34 H 1.08999 * 109.58571 * 54.47251 * 4 2 1 35 35 H 0.96998 * 119.99902 * 0.02562 * 10 8 6 36 36 H 1.08995 * 109.47313 * 59.99980 * 11 10 8 37 37 H 1.09002 * 109.47299 * 300.00039 * 11 10 8 38 38 H 1.08995 * 109.46954 * 180.02562 * 13 12 11 39 39 H 1.08998 * 109.46927 * 300.00472 * 13 12 11 40 40 H 1.09001 * 109.47010 * 59.99833 * 13 12 11 41 41 H 1.09003 * 109.47201 * 299.99759 * 14 12 11 42 42 H 1.08998 * 109.47139 * 59.99566 * 14 12 11 43 43 H 1.09002 * 109.47206 * 180.02562 * 14 12 11 44 44 H 0.96994 * 120.00285 * 180.02562 * 18 17 15 45 45 H 1.09001 * 109.58386 * 173.14515 * 23 5 4 46 46 H 1.08993 * 109.58984 * 293.57252 * 23 5 4 47 47 H 1.08995 * 109.56683 * 185.54970 * 24 23 5 48 48 H 1.09000 * 109.38534 * 65.51016 * 24 23 5 49 49 H 0.96694 * 117.00035 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0414 -0.7236 -1.2497 5 7 1.6515 -2.1379 -1.1700 6 6 0.9739 -2.7214 -2.1784 7 8 0.7112 -2.0877 -3.1794 8 6 0.5462 -4.1488 -2.0639 9 8 0.9152 -4.8191 -1.1221 10 7 -0.2494 -4.6916 -3.0067 11 6 -0.6691 -6.0906 -2.8941 12 6 -1.5594 -6.4533 -4.0844 13 6 -0.7769 -6.2587 -5.3847 14 6 -2.7939 -5.5496 -4.0920 15 6 -1.9907 -7.8926 -3.9690 16 1 -1.6629 -8.4890 -3.1303 17 6 -2.8087 -8.4465 -4.9308 18 7 -3.2083 -7.7202 -5.9518 19 14 -3.3495 -10.2284 -4.7836 20 1 -2.7683 -10.8222 -3.5528 21 1 -4.8315 -10.2915 -4.7107 22 1 -2.8795 -10.9880 -5.9699 23 6 2.0091 -2.9026 0.0326 24 6 1.5030 -2.1561 1.2656 25 6 2.0408 -0.7234 1.2482 26 1 3.1305 -0.7450 1.2351 27 6 1.5679 0.0053 2.4796 28 8 0.8920 1.0008 2.3702 29 8 1.8977 -0.4515 3.6980 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5149 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 3.1275 -0.6461 -1.2981 34 1 1.6008 -0.2727 -2.1389 35 1 -0.5441 -4.1559 -3.7597 36 1 -1.2262 -6.2294 -1.9677 37 1 0.2103 -6.7345 -2.8892 38 1 -1.4113 -6.5166 -6.2326 39 1 -0.4646 -5.2177 -5.4684 40 1 0.1027 -6.9025 -5.3793 41 1 -3.3514 -5.6882 -3.1657 42 1 -2.4816 -4.5086 -4.1757 43 1 -3.4284 -5.8082 -4.9397 44 1 -3.7841 -8.1097 -6.6283 45 1 1.5472 -3.8889 -0.0108 46 1 3.0925 -3.0064 0.0909 47 1 1.8480 -2.6633 2.1665 48 1 0.4132 -2.1357 1.2542 49 1 1.5709 0.0493 4.4578 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599940784.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:02 Heat of formation + Delta-G solvation = -150.266737 kcal Electronic energy + Delta-G solvation = -30991.008600 eV Core-core repulsion = 26725.697192 eV Total energy + Delta-G solvation = -4265.311408 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.39784 -40.51125 -38.83926 -37.73859 -36.66578 -36.41855 -33.98298 -33.15979 -32.12287 -30.94666 -27.75112 -27.45116 -25.92408 -25.75706 -25.20589 -23.41529 -23.23845 -22.07955 -20.37262 -19.18902 -18.77719 -18.40439 -17.81716 -17.17551 -16.69636 -16.17439 -15.94856 -15.82002 -15.33363 -15.07491 -14.81374 -14.65743 -14.47621 -13.99911 -13.91645 -13.74311 -13.31155 -13.02966 -12.96963 -12.78518 -12.37913 -12.26726 -12.13078 -12.02185 -11.75375 -11.45541 -11.42119 -11.25081 -11.12095 -10.94571 -10.92797 -10.78320 -10.68740 -10.54298 -10.43849 -10.22503 -9.69432 -9.45597 -8.97343 -8.90449 -8.80665 -8.66365 -8.40811 -6.05605 -4.16559 1.57025 1.83687 2.42267 2.66200 3.25071 3.33996 3.36508 3.37573 3.66445 4.13198 4.31645 4.36121 4.54984 4.59650 4.71217 4.87287 4.94896 5.10971 5.21257 5.24557 5.34158 5.41716 5.45978 5.52073 5.76579 5.81131 5.87980 5.90434 6.05143 6.07295 6.17911 6.21062 6.30178 6.42704 6.66280 6.81394 6.83656 6.90548 6.96561 7.02803 7.29653 7.51578 7.53874 7.54453 7.66590 7.90980 7.96843 8.08793 8.26523 8.36105 8.83957 9.49692 10.95861 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023159 B = 0.002334 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.758195 B =11995.632231 C =12393.190241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.088 4.088 3 H 0.091 0.909 4 C 0.112 3.888 5 N -0.583 5.583 6 C 0.509 3.491 7 O -0.521 6.521 8 C 0.499 3.501 9 O -0.524 6.524 10 N -0.674 5.674 11 C 0.126 3.874 12 C 0.056 3.944 13 C -0.134 4.134 14 C -0.134 4.134 15 C -0.507 4.507 16 H 0.059 0.941 17 C 0.066 3.934 18 N -0.884 5.884 19 Si 0.894 3.106 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.048 3.952 24 C -0.126 4.126 25 C -0.078 4.078 26 H 0.111 0.889 27 C 0.483 3.517 28 O -0.510 6.510 29 O -0.516 6.516 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.412 0.588 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.009 0.991 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.008 0.992 43 H 0.088 0.912 44 H 0.260 0.740 45 H 0.170 0.830 46 H 0.069 0.931 47 H 0.090 0.910 48 H 0.076 0.924 49 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.250 14.603 14.160 23.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.107 4.107 3 H 0.110 0.890 4 C -0.011 4.011 5 N -0.317 5.317 6 C 0.292 3.708 7 O -0.396 6.396 8 C 0.280 3.720 9 O -0.405 6.405 10 N -0.324 5.324 11 C 0.005 3.995 12 C 0.055 3.945 13 C -0.192 4.192 14 C -0.192 4.192 15 C -0.546 4.546 16 H 0.077 0.923 17 C -0.135 4.135 18 N -0.522 5.522 19 Si 0.722 3.278 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.072 4.072 24 C -0.165 4.165 25 C -0.097 4.097 26 H 0.129 0.871 27 C 0.326 3.674 28 O -0.398 6.398 29 O -0.327 6.327 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.120 0.880 35 H 0.250 0.750 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.027 0.973 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.027 0.973 43 H 0.106 0.894 44 H 0.070 0.930 45 H 0.186 0.814 46 H 0.087 0.913 47 H 0.108 0.892 48 H 0.095 0.905 49 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 11.181 14.472 13.697 22.848 hybrid contribution -0.527 -0.141 0.356 0.651 sum 10.654 14.330 14.052 22.723 Atomic orbital electron populations 1.22062 0.93789 1.02367 1.03366 1.21379 0.97912 0.99355 0.92091 0.89041 1.21777 0.99877 0.80553 0.98859 1.47926 1.54430 1.11136 1.18238 1.20324 0.78741 0.88269 0.83434 1.90753 1.54590 1.64755 1.29512 1.20011 0.80697 0.87519 0.83752 1.90213 1.56597 1.62241 1.31429 1.46273 1.46276 1.15178 1.24704 1.21994 0.98850 0.77312 1.01392 1.18385 0.90960 0.95771 0.89360 1.21864 0.99307 0.95885 1.02133 1.21866 1.00239 0.94771 1.02335 1.20976 1.30108 0.94856 1.08620 0.92271 1.24888 0.95699 0.97812 0.95118 1.69816 1.35066 1.35694 1.11654 0.86501 0.78336 0.84883 0.78068 1.19742 1.21059 1.21044 1.23313 1.01806 1.00658 0.81457 1.21930 1.02270 0.92251 1.00005 1.21172 1.02725 0.96556 0.89271 0.87142 1.23533 0.76532 0.82598 0.84741 1.90685 1.36061 1.25949 1.87099 1.84545 1.72925 1.58346 1.16913 0.92567 0.90561 0.92249 0.90803 0.88044 0.75024 0.91810 0.91785 0.89438 0.97252 0.95290 0.95328 0.97307 0.89376 0.92963 0.81434 0.91311 0.89152 0.90530 0.73233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 8.40 37.16 0.31 -1.37 16 2 C -0.09 -0.77 2.36 -90.49 -0.21 -0.98 16 3 H 0.09 0.73 8.07 -51.93 -0.42 0.32 16 4 C 0.11 1.06 5.83 -3.71 -0.02 1.04 16 5 N -0.58 -6.78 2.42 -173.54 -0.42 -7.20 16 6 C 0.51 7.57 7.76 -11.59 -0.09 7.48 16 7 O -0.52 -8.76 15.91 5.49 0.09 -8.68 16 8 C 0.50 8.18 7.80 -11.58 -0.09 8.09 16 9 O -0.52 -8.84 13.02 5.50 0.07 -8.77 16 10 N -0.67 -11.89 4.95 -60.74 -0.30 -12.19 16 11 C 0.13 2.51 4.50 -4.04 -0.02 2.49 16 12 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 13 C -0.13 -3.00 8.08 37.16 0.30 -2.70 16 14 C -0.13 -3.00 8.08 37.16 0.30 -2.70 16 15 C -0.51 -12.84 8.01 -34.44 -0.28 -13.12 16 16 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 17 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 18 N -0.88 -23.26 9.35 55.43 0.52 -22.74 16 19 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.05 0.49 6.20 -3.93 -0.02 0.46 16 24 C -0.13 -1.07 4.94 -26.83 -0.13 -1.20 16 25 C -0.08 -0.60 2.37 -91.73 -0.22 -0.82 16 26 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 27 C 0.48 4.13 7.34 36.00 0.26 4.40 16 28 O -0.51 -5.74 14.51 -18.75 -0.27 -6.02 16 29 O -0.52 -3.29 13.30 -39.25 -0.52 -3.81 16 30 H 0.06 0.65 5.97 -51.93 -0.31 0.34 16 31 H 0.08 0.87 5.65 -51.93 -0.29 0.58 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.10 1.09 7.01 -51.93 -0.36 0.72 16 35 H 0.41 7.27 5.65 -40.82 -0.23 7.04 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.09 2.17 6.08 -51.93 -0.32 1.86 16 39 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.01 0.16 6.86 -51.93 -0.36 -0.19 16 43 H 0.09 2.19 6.06 -51.93 -0.31 1.87 16 44 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 45 H 0.17 2.10 3.78 -56.98 -0.22 1.89 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.09 0.65 8.08 -51.93 -0.42 0.23 16 48 H 0.08 0.75 6.33 -51.93 -0.33 0.42 16 49 H 0.41 1.02 9.10 45.56 0.41 1.44 16 LS Contribution 378.35 15.07 5.70 5.70 Total: -1.00 -29.24 378.35 -6.67 -35.91 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -6.43 Total: 8.68 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -0.08 Total: 3.86 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: -0.20 Total: -42.13 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.64 Total: -27.27 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.24 -6.67 -35.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599940784.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.357 kcal (2) G-P(sol) polarization free energy of solvation -29.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds