Wall clock time and date at job start Tue Mar 31 2020 23:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08992 * 109.49763 * 2 1 4 4 C 1.53189 * 109.49683 * 239.92829 * 2 1 3 5 5 N 1.46924 * 108.77585 * 294.68783 * 4 2 1 6 6 C 1.34779 * 120.63362 * 126.36998 * 5 4 2 7 7 O 1.21355 * 119.99805 * 1.95770 * 6 5 4 8 8 C 1.49445 * 120.00214 * 181.95762 * 6 5 4 9 9 O 1.21347 * 120.00405 * 353.07205 * 8 6 5 10 10 N 1.34783 * 120.00006 * 173.06921 * 8 6 5 11 11 C 1.46492 * 120.00034 * 180.02562 * 10 8 6 12 12 C 1.53002 * 109.47255 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.47221 * 59.99814 * 12 11 10 14 14 C 1.52996 * 109.46946 * 300.00080 * 12 11 10 15 15 C 1.50695 * 109.47381 * 179.97438 * 12 11 10 16 16 H 1.08004 * 120.00124 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00449 * 179.72495 * 15 12 11 18 18 N 1.31522 * 119.99667 * 0.27395 * 17 15 12 19 19 Si 1.86796 * 120.00309 * 180.27659 * 17 15 12 20 20 H 1.48498 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46992 * 119.99896 * 19 17 15 22 22 H 1.48501 * 109.47036 * 239.99637 * 19 17 15 23 23 C 1.46928 * 118.73897 * 306.63867 * 5 4 2 24 24 C 1.52760 * 109.00641 * 53.31368 * 23 5 4 25 25 C 1.53038 * 109.38405 * 305.58955 * 24 23 5 26 26 H 1.09005 * 109.44779 * 301.22618 * 25 24 23 27 27 C 1.50697 * 109.46326 * 181.26253 * 25 24 23 28 28 O 1.20828 * 119.99802 * 239.93109 * 27 25 24 29 29 O 1.34228 * 120.00185 * 59.92639 * 27 25 24 30 30 H 1.08996 * 109.47057 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46971 * 300.06825 * 1 2 3 32 32 H 1.08998 * 109.46842 * 60.06814 * 1 2 3 33 33 H 1.08997 * 109.58613 * 174.89683 * 4 2 1 34 34 H 1.08999 * 109.58571 * 54.47251 * 4 2 1 35 35 H 0.96998 * 119.99902 * 0.02562 * 10 8 6 36 36 H 1.08995 * 109.47313 * 59.99980 * 11 10 8 37 37 H 1.09002 * 109.47299 * 300.00039 * 11 10 8 38 38 H 1.08995 * 109.46954 * 180.02562 * 13 12 11 39 39 H 1.08998 * 109.46927 * 300.00472 * 13 12 11 40 40 H 1.09001 * 109.47010 * 59.99833 * 13 12 11 41 41 H 1.09003 * 109.47201 * 299.99759 * 14 12 11 42 42 H 1.08998 * 109.47139 * 59.99566 * 14 12 11 43 43 H 1.09002 * 109.47206 * 180.02562 * 14 12 11 44 44 H 0.96994 * 120.00285 * 180.02562 * 18 17 15 45 45 H 1.09001 * 109.58386 * 173.14515 * 23 5 4 46 46 H 1.08993 * 109.58984 * 293.57252 * 23 5 4 47 47 H 1.08995 * 109.56683 * 185.54970 * 24 23 5 48 48 H 1.09000 * 109.38534 * 65.51016 * 24 23 5 49 49 H 0.96694 * 117.00035 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0414 -0.7236 -1.2497 5 7 1.6515 -2.1379 -1.1700 6 6 0.9739 -2.7214 -2.1784 7 8 0.7112 -2.0877 -3.1794 8 6 0.5462 -4.1488 -2.0639 9 8 0.9152 -4.8191 -1.1221 10 7 -0.2494 -4.6916 -3.0067 11 6 -0.6691 -6.0906 -2.8941 12 6 -1.5594 -6.4533 -4.0844 13 6 -0.7769 -6.2587 -5.3847 14 6 -2.7939 -5.5496 -4.0920 15 6 -1.9907 -7.8926 -3.9690 16 1 -1.6629 -8.4890 -3.1303 17 6 -2.8087 -8.4465 -4.9308 18 7 -3.2083 -7.7202 -5.9518 19 14 -3.3495 -10.2284 -4.7836 20 1 -2.7683 -10.8222 -3.5528 21 1 -4.8315 -10.2915 -4.7107 22 1 -2.8795 -10.9880 -5.9699 23 6 2.0091 -2.9026 0.0326 24 6 1.5030 -2.1561 1.2656 25 6 2.0408 -0.7234 1.2482 26 1 3.1305 -0.7450 1.2351 27 6 1.5679 0.0053 2.4796 28 8 0.8920 1.0008 2.3702 29 8 1.8977 -0.4515 3.6980 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5149 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 3.1275 -0.6461 -1.2981 34 1 1.6008 -0.2727 -2.1389 35 1 -0.5441 -4.1559 -3.7597 36 1 -1.2262 -6.2294 -1.9677 37 1 0.2103 -6.7345 -2.8892 38 1 -1.4113 -6.5166 -6.2326 39 1 -0.4646 -5.2177 -5.4684 40 1 0.1027 -6.9025 -5.3793 41 1 -3.3514 -5.6882 -3.1657 42 1 -2.4816 -4.5086 -4.1757 43 1 -3.4284 -5.8082 -4.9397 44 1 -3.7841 -8.1097 -6.6283 45 1 1.5472 -3.8889 -0.0108 46 1 3.0925 -3.0064 0.0909 47 1 1.8480 -2.6633 2.1665 48 1 0.4132 -2.1357 1.2542 49 1 1.5709 0.0493 4.4578 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599940784.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:01 Heat of formation + Delta-G solvation = -169.209909 kcal Electronic energy + Delta-G solvation = -30991.830037 eV Core-core repulsion = 26725.697192 eV Total energy + Delta-G solvation = -4266.132845 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.30464 -41.43947 -39.97319 -38.74025 -38.22712 -37.11235 -35.31023 -34.38060 -32.87573 -32.74576 -28.64088 -28.45590 -27.58449 -27.46862 -26.91537 -24.48216 -24.10910 -22.87051 -21.56552 -20.67257 -19.82000 -19.03615 -18.95900 -18.21234 -17.78624 -17.46102 -17.21907 -16.73307 -16.63737 -16.50599 -15.95849 -15.80988 -15.48440 -15.16505 -14.98254 -14.77173 -14.50092 -14.38962 -14.18647 -14.01938 -13.78105 -13.29634 -13.20449 -13.10824 -12.92586 -12.80248 -12.70889 -12.54898 -12.47316 -12.28724 -12.23741 -12.11183 -11.99791 -11.66944 -11.62746 -11.50154 -11.34922 -11.21612 -10.71209 -10.41012 -10.17134 -10.04902 -9.79128 -8.00840 -6.17237 0.34672 1.20237 1.31296 1.43915 1.48581 1.57439 2.07408 2.17780 2.44079 2.56449 3.23398 3.29426 3.47255 3.64342 3.88586 3.96970 4.15733 4.31243 4.35501 4.38074 4.49475 4.52762 4.64216 4.68338 4.68657 4.70540 4.79795 4.84647 4.98616 5.02821 5.04399 5.05417 5.10011 5.13834 5.17929 5.28803 5.33412 5.42932 5.61002 5.65180 5.68796 5.69639 5.97569 6.11738 6.19933 6.27970 6.42043 6.73355 6.87637 6.97975 7.01979 7.51054 8.98611 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023159 B = 0.002334 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.758195 B =11995.632231 C =12393.190241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.083 4.083 3 H 0.104 0.896 4 C 0.111 3.889 5 N -0.572 5.572 6 C 0.509 3.491 7 O -0.546 6.546 8 C 0.500 3.500 9 O -0.529 6.529 10 N -0.679 5.679 11 C 0.143 3.857 12 C 0.050 3.950 13 C -0.124 4.124 14 C -0.125 4.125 15 C -0.523 4.523 16 H 0.053 0.947 17 C 0.025 3.975 18 N -0.902 5.902 19 Si 0.948 3.052 20 H -0.270 1.270 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.048 3.952 24 C -0.119 4.119 25 C -0.075 4.075 26 H 0.141 0.859 27 C 0.489 3.511 28 O -0.542 6.542 29 O -0.511 6.511 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.412 0.588 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.029 0.971 40 H 0.025 0.975 41 H 0.024 0.976 42 H 0.028 0.972 43 H 0.062 0.938 44 H 0.259 0.741 45 H 0.147 0.853 46 H 0.096 0.904 47 H 0.108 0.892 48 H 0.058 0.942 49 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.148 15.328 15.784 25.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.102 4.102 3 H 0.123 0.877 4 C -0.011 4.011 5 N -0.304 5.304 6 C 0.292 3.708 7 O -0.425 6.425 8 C 0.282 3.718 9 O -0.410 6.410 10 N -0.330 5.330 11 C 0.020 3.980 12 C 0.050 3.950 13 C -0.182 4.182 14 C -0.183 4.183 15 C -0.561 4.561 16 H 0.072 0.928 17 C -0.174 4.174 18 N -0.541 5.541 19 Si 0.775 3.225 20 H -0.194 1.194 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.072 4.072 24 C -0.157 4.157 25 C -0.094 4.094 26 H 0.159 0.841 27 C 0.332 3.668 28 O -0.433 6.433 29 O -0.324 6.324 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.124 0.876 34 H 0.106 0.894 35 H 0.250 0.750 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.047 0.953 40 H 0.044 0.956 41 H 0.043 0.957 42 H 0.047 0.953 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.163 0.837 46 H 0.114 0.886 47 H 0.126 0.874 48 H 0.077 0.923 49 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 13.111 15.205 15.388 25.296 hybrid contribution -1.077 -0.328 -0.023 1.126 sum 12.034 14.878 15.366 24.541 Atomic orbital electron populations 1.22007 0.95595 1.01101 1.02559 1.21331 0.96276 1.00181 0.92369 0.87745 1.21977 1.01625 0.78772 0.98687 1.48043 1.52618 1.12125 1.17652 1.19987 0.79403 0.87379 0.84068 1.90745 1.56096 1.64931 1.30685 1.20345 0.80009 0.88377 0.83095 1.90268 1.56478 1.62856 1.31354 1.46130 1.47267 1.14240 1.25382 1.21567 0.97948 0.78653 0.99786 1.18374 0.91517 0.94641 0.90485 1.21712 0.98505 0.97006 1.01007 1.21716 0.99712 0.95935 1.00906 1.21279 1.30156 0.96344 1.08370 0.92842 1.25506 0.95992 1.00892 0.95057 1.69939 1.35383 1.36773 1.12025 0.85662 0.77730 0.81228 0.77904 1.19445 1.21065 1.21007 1.23286 1.03180 0.99499 0.81275 1.21841 1.01180 0.92863 0.99823 1.21178 1.04377 0.95400 0.88424 0.84122 1.23593 0.75718 0.81994 0.85457 1.90687 1.37519 1.27484 1.87598 1.84500 1.72556 1.58377 1.16973 0.94019 0.91404 0.92997 0.87635 0.89362 0.75033 0.92399 0.92352 0.91949 0.95257 0.95622 0.95711 0.95300 0.91880 0.93123 0.83667 0.88628 0.87366 0.92339 0.71223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 8.40 71.99 0.60 -2.60 16 2 C -0.08 -1.25 2.36 -10.71 -0.03 -1.27 16 3 H 0.10 1.39 8.07 -2.39 -0.02 1.37 16 4 C 0.11 1.81 5.83 86.36 0.50 2.32 16 5 N -0.57 -12.19 2.42 -821.33 -1.98 -14.18 16 6 C 0.51 14.67 7.76 87.27 0.68 15.35 16 7 O -0.55 -18.12 15.91 -3.26 -0.05 -18.17 16 8 C 0.50 16.08 7.80 87.27 0.68 16.76 16 9 O -0.53 -17.45 13.02 -3.24 -0.04 -17.49 16 10 N -0.68 -23.75 4.95 -464.43 -2.30 -26.04 16 11 C 0.14 5.68 4.50 86.38 0.39 6.07 16 12 C 0.05 2.29 0.50 -52.93 -0.03 2.26 16 13 C -0.12 -5.59 8.08 71.98 0.58 -5.01 16 14 C -0.12 -5.62 8.08 71.98 0.58 -5.04 16 15 C -0.52 -26.69 8.01 25.60 0.21 -26.49 16 16 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 17 C 0.03 1.30 5.15 84.65 0.44 1.74 16 18 N -0.90 -48.14 9.35 21.45 0.20 -47.94 16 19 Si 0.95 41.80 29.54 68.60 2.03 43.82 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 23 C 0.05 0.84 6.20 86.22 0.53 1.37 16 24 C -0.12 -1.70 4.94 30.53 0.15 -1.55 16 25 C -0.07 -0.91 2.37 -11.51 -0.03 -0.94 16 26 H 0.14 0.95 8.14 -2.38 -0.02 0.94 16 27 C 0.49 7.12 7.34 71.24 0.52 7.64 16 28 O -0.54 -11.36 14.51 21.96 0.32 -11.04 16 29 O -0.51 -4.99 13.30 -51.40 -0.68 -5.67 16 30 H 0.04 0.96 5.97 -2.39 -0.01 0.94 16 31 H 0.07 1.52 5.65 -2.39 -0.01 1.51 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 1.75 7.01 -2.39 -0.02 1.74 16 35 H 0.41 14.38 5.65 -92.71 -0.52 13.85 16 36 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.06 3.13 6.08 -2.39 -0.01 3.12 16 39 H 0.03 1.16 6.86 -2.39 -0.02 1.14 16 40 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.03 1.14 6.86 -2.39 -0.02 1.12 16 43 H 0.06 3.17 6.06 -2.39 -0.01 3.16 16 44 H 0.26 13.34 8.31 -92.71 -0.77 12.57 16 45 H 0.15 3.41 3.78 -82.30 -0.31 3.10 16 46 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.11 1.21 8.08 -2.39 -0.02 1.19 16 48 H 0.06 1.07 6.33 -2.39 -0.02 1.06 16 49 H 0.43 1.00 9.10 -74.06 -0.67 0.33 16 Total: -1.00 -63.25 378.35 2.77 -60.47 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: -0.50 Total: 25.64 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 5.79 Total: 10.62 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -4.08 Total: -88.16 kcal Atomic # 8 Polarization: -51.92 SS G_CDS: -0.46 Total: -52.38 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -63.25 2.77 -60.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599940784.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.737 kcal (2) G-P(sol) polarization free energy of solvation -63.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds