Wall clock time and date at job start Tue Mar 31 2020 23:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46769 * 2 1 4 4 C 1.53004 * 109.46705 * 240.00068 * 2 1 3 5 5 C 1.50699 * 109.46636 * 174.99847 * 4 2 1 6 6 O 1.20827 * 120.00096 * 0.02562 * 5 4 2 7 7 O 1.34233 * 119.99719 * 179.97438 * 5 4 2 8 8 C 1.45198 * 116.99754 * 180.02562 * 7 5 4 9 9 C 1.50704 * 109.47217 * 180.02562 * 8 7 5 10 10 O 1.21284 * 119.99387 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00533 * 180.02562 * 9 8 7 12 12 C 1.46491 * 120.00280 * 179.97438 * 11 9 8 13 13 C 1.50706 * 109.47522 * 179.97438 * 12 11 9 14 14 H 1.08002 * 119.99121 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00254 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99998 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99774 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47190 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47082 * 120.00095 * 17 15 13 20 20 H 1.48499 * 109.47204 * 240.00139 * 17 15 13 21 21 N 1.46494 * 109.47118 * 120.00496 * 2 1 3 22 22 C 1.34784 * 119.99635 * 274.99773 * 21 2 1 23 23 O 1.21279 * 119.99925 * 359.97438 * 22 21 2 24 24 C 1.50700 * 119.99961 * 180.02562 * 22 21 2 25 25 C 1.54274 * 110.03139 * 297.90611 * 24 22 21 26 26 C 1.54960 * 104.15934 * 217.13316 * 25 24 22 27 27 C 1.54890 * 102.77769 * 37.89262 * 26 25 24 28 28 C 1.53870 * 110.03530 * 180.69114 * 24 22 21 29 29 H 1.09005 * 109.46855 * 59.99655 * 1 2 3 30 30 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47041 * 300.00119 * 1 2 3 32 32 H 1.09002 * 109.47373 * 295.00066 * 4 2 1 33 33 H 1.09001 * 109.47302 * 55.00561 * 4 2 1 34 34 H 1.08998 * 109.47345 * 299.99817 * 8 7 5 35 35 H 1.09005 * 109.47564 * 60.00278 * 8 7 5 36 36 H 0.97005 * 119.99827 * 359.97438 * 11 9 8 37 37 H 1.08998 * 109.47529 * 299.99873 * 12 11 9 38 38 H 1.09004 * 109.47153 * 60.00181 * 12 11 9 39 39 H 0.97001 * 119.99496 * 179.97438 * 16 15 13 40 40 H 0.96995 * 120.00292 * 95.27206 * 21 2 1 41 41 H 1.08997 * 110.01573 * 59.29300 * 24 22 21 42 42 H 1.08999 * 110.48561 * 335.78565 * 25 24 22 43 43 H 1.09004 * 110.48438 * 98.42226 * 25 24 22 44 44 H 1.08994 * 110.72279 * 279.57290 * 26 25 24 45 45 H 1.09007 * 110.91921 * 156.29317 * 26 25 24 46 46 H 1.09000 * 110.48895 * 203.40575 * 27 26 25 47 47 H 1.08995 * 110.60291 * 80.81173 * 27 26 25 48 48 H 1.08993 * 110.03088 * 238.57172 * 28 24 22 49 49 H 1.09007 * 110.02608 * 359.97438 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 8 4.1427 -0.0233 -0.4474 7 8 4.2121 -1.1782 -2.3303 8 6 5.6572 -1.0364 -2.3264 9 6 6.2329 -1.7267 -3.5360 10 8 5.4977 -2.2837 -4.3235 11 7 7.5648 -1.7260 -3.7422 12 6 8.1244 -2.3974 -4.9177 13 6 9.6243 -2.2503 -4.9139 14 1 10.1118 -1.7108 -4.1152 15 6 10.3741 -2.8051 -5.9292 16 7 9.7804 -3.4624 -6.9013 17 14 12.2332 -2.6232 -5.9239 18 1 12.6512 -1.8462 -4.7294 19 1 12.8620 -3.9679 -5.8840 20 1 12.6644 -1.9114 -7.1538 21 7 2.0184 -0.6907 1.1961 22 6 2.1471 -0.0183 2.3571 23 8 1.8591 1.1585 2.4114 24 6 2.6500 -0.7286 3.5874 25 6 1.6794 -1.8628 3.9766 26 6 1.6764 -1.8442 5.5261 27 6 1.7424 -0.3311 5.8506 28 6 2.6905 0.2447 4.7785 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.7516 -1.7715 -1.2057 33 1 1.6054 -0.2617 -2.1370 34 1 5.9186 0.0214 -2.3535 35 1 6.0642 -1.4882 -1.4217 36 1 8.1528 -1.2807 -3.1121 37 1 7.8628 -3.4552 -4.8909 38 1 7.7177 -1.9454 -5.8224 39 1 10.3080 -3.8525 -7.6158 40 1 2.2528 -1.6308 1.1515 41 1 3.6444 -1.1350 3.4033 42 1 0.6804 -1.6592 3.5908 43 1 2.0443 -2.8210 3.6064 44 1 2.5509 -2.3623 5.9197 45 1 0.7595 -2.2839 5.9189 46 1 2.1530 -0.1724 6.8478 47 1 0.7545 0.1220 5.7693 48 1 3.7044 0.3100 5.1729 49 1 2.3468 1.2310 4.4665 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727202342.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:43 Heat of formation + Delta-G solvation = -185.670542 kcal Electronic energy + Delta-G solvation = -29079.182800 eV Core-core repulsion = 24812.336168 eV Total energy + Delta-G solvation = -4266.846632 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.93198 -40.25507 -38.81295 -37.68831 -36.63301 -35.76619 -34.29300 -32.45757 -32.26737 -29.86580 -29.21912 -28.96511 -28.34320 -26.57472 -23.45953 -22.66799 -21.76125 -21.08305 -20.69499 -19.99409 -19.81595 -17.95653 -17.76094 -17.49012 -16.98871 -16.47395 -16.24026 -15.91583 -15.51538 -15.19716 -15.02486 -14.95140 -14.72263 -14.29688 -13.82935 -13.74013 -13.54789 -13.27678 -13.11673 -12.88823 -12.48921 -12.44904 -12.31400 -12.04897 -12.03765 -11.80114 -11.67549 -11.50071 -11.45704 -11.41641 -11.16368 -11.02134 -10.97308 -10.84434 -10.75719 -10.66512 -10.37766 -9.92187 -9.45829 -9.37056 -9.22715 -8.82286 -8.03422 -6.23037 -4.30490 2.03136 2.32797 2.46936 2.87753 3.12403 3.20062 3.27434 3.30369 3.89580 4.08892 4.16517 4.20565 4.29616 4.36873 4.56724 4.71667 4.79161 4.92233 4.99668 5.05605 5.06944 5.11236 5.13020 5.13355 5.16545 5.18618 5.23980 5.29072 5.29413 5.33288 5.42240 5.54869 5.62380 5.73243 5.78139 5.82446 5.93955 6.01179 6.22705 6.28001 7.18243 7.23120 7.26071 7.41590 7.54513 7.61993 7.88263 8.02396 8.45426 8.67223 8.91785 9.36128 10.87117 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016891 B = 0.001778 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.320152 B =15742.224231 C =16771.711490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.153 3.847 3 H 0.099 0.901 4 C -0.124 4.124 5 C 0.455 3.545 6 O -0.501 6.501 7 O -0.330 6.330 8 C 0.050 3.950 9 C 0.499 3.501 10 O -0.535 6.535 11 N -0.706 5.706 12 C 0.251 3.749 13 C -0.545 4.545 14 H 0.065 0.935 15 C 0.064 3.936 16 N -0.884 5.884 17 Si 0.905 3.095 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.281 1.281 21 N -0.720 5.720 22 C 0.528 3.472 23 O -0.539 6.539 24 C -0.115 4.115 25 C -0.115 4.115 26 C -0.124 4.124 27 C -0.124 4.124 28 C -0.119 4.119 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.124 0.876 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.393 0.607 37 H 0.030 0.970 38 H 0.030 0.970 39 H 0.266 0.734 40 H 0.398 0.602 41 H 0.099 0.901 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.245 4.131 22.416 29.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.048 3.952 3 H 0.117 0.883 4 C -0.162 4.162 5 C 0.297 3.703 6 O -0.388 6.388 7 O -0.245 6.245 8 C -0.028 4.028 9 C 0.282 3.718 10 O -0.412 6.412 11 N -0.356 5.356 12 C 0.130 3.870 13 C -0.584 4.584 14 H 0.083 0.917 15 C -0.140 4.140 16 N -0.521 5.521 17 Si 0.733 3.267 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.207 1.207 21 N -0.371 5.371 22 C 0.315 3.685 23 O -0.415 6.415 24 C -0.136 4.136 25 C -0.153 4.153 26 C -0.162 4.162 27 C -0.162 4.162 28 C -0.157 4.157 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.131 0.869 33 H 0.142 0.858 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.226 0.774 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.076 0.924 40 H 0.232 0.768 41 H 0.117 0.883 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.716 4.647 21.912 29.840 hybrid contribution 1.711 -0.223 0.094 1.728 sum -18.005 4.425 22.006 28.775 Atomic orbital electron populations 1.22168 0.94057 1.02587 1.03210 1.20761 0.94031 0.98099 0.82282 0.88331 1.21784 0.88220 1.05084 1.01078 1.23691 0.91632 0.75762 0.79177 1.90717 1.70243 1.39365 1.38496 1.86567 1.21085 1.70244 1.46577 1.22854 0.77795 1.02648 0.99500 1.19897 0.83736 0.81793 0.86373 1.90709 1.59100 1.44875 1.46557 1.46373 1.05009 1.55547 1.28699 1.19187 0.93034 0.92861 0.81874 1.21246 0.90787 1.36617 1.09725 0.91705 1.24954 0.99401 0.94638 0.95009 1.69980 1.36016 1.34602 1.11551 0.86333 0.84289 0.77982 0.78146 1.19602 1.20757 1.20739 1.45927 1.67782 1.13845 1.09525 1.20470 0.76648 0.87051 0.84342 1.90655 1.50113 1.16007 1.84763 1.21962 1.00922 0.97091 0.93637 1.22371 0.99013 0.97179 0.96699 1.22510 1.01991 0.96724 0.94938 1.22364 0.99901 0.95277 0.98634 1.22162 1.00144 1.00058 0.93350 0.91116 0.92047 0.91461 0.86871 0.85784 0.88558 0.88608 0.77417 0.95235 0.95235 0.92405 0.76812 0.88328 0.91157 0.90865 0.91196 0.91347 0.91529 0.91590 0.91437 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.48 37.16 0.35 -0.68 16 2 C 0.15 1.26 2.14 -67.93 -0.15 1.11 16 3 H 0.10 1.08 7.39 -51.93 -0.38 0.70 16 4 C -0.12 -0.92 5.35 -27.88 -0.15 -1.07 16 5 C 0.46 5.37 7.82 36.01 0.28 5.66 16 6 O -0.50 -7.00 15.10 -18.75 -0.28 -7.28 16 7 O -0.33 -4.78 9.75 -45.91 -0.45 -5.23 16 8 C 0.05 0.72 5.94 36.01 0.21 0.94 16 9 C 0.50 9.75 7.91 -10.99 -0.09 9.66 16 10 O -0.53 -12.78 16.50 -14.11 -0.23 -13.01 16 11 N -0.71 -14.33 5.55 -61.47 -0.34 -14.68 16 12 C 0.25 6.47 5.43 -5.20 -0.03 6.44 16 13 C -0.55 -14.47 9.28 -34.44 -0.32 -14.79 16 14 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.88 -25.59 13.29 55.43 0.74 -24.85 16 17 Si 0.91 20.51 29.54 -169.99 -5.02 15.49 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 N -0.72 -5.96 4.16 -53.80 -0.22 -6.18 16 22 C 0.53 5.46 6.97 -10.98 -0.08 5.38 16 23 O -0.54 -7.54 14.87 5.56 0.08 -7.46 16 24 C -0.11 -0.90 3.29 -90.65 -0.30 -1.20 16 25 C -0.11 -0.66 6.30 -25.03 -0.16 -0.82 16 26 C -0.12 -0.68 6.91 -24.70 -0.17 -0.85 16 27 C -0.12 -0.81 6.83 -25.07 -0.17 -0.98 16 28 C -0.12 -0.98 6.40 -25.61 -0.16 -1.14 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 1.25 8.13 -51.93 -0.42 0.83 16 35 H 0.10 1.21 8.13 -51.93 -0.42 0.78 16 36 H 0.39 6.71 8.32 -40.82 -0.34 6.37 16 37 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.40 2.48 8.59 -40.82 -0.35 2.13 16 41 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.43 7.85 -51.93 -0.41 0.02 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.09 0.94 6.39 -51.92 -0.33 0.61 16 LS Contribution 410.29 15.07 6.18 6.18 Total: -1.00 -35.61 410.29 -8.67 -44.29 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -8.11 Total: 3.44 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -1.02 Total: 9.29 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.17 Total: -45.71 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -0.88 Total: -32.98 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.61 -8.67 -44.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727202342.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.383 kcal (2) G-P(sol) polarization free energy of solvation -35.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds