Wall clock time and date at job start Tue Mar 31 2020 23:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 109.47055 * 2 1 4 4 N 1.46506 * 109.47382 * 119.99246 * 2 1 3 5 5 C 1.34771 * 119.99879 * 275.00525 * 4 2 1 6 6 O 1.21272 * 120.00510 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99517 * 179.97438 * 5 4 2 8 8 C 1.53005 * 109.47006 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.46645 * 294.99912 * 8 7 5 10 10 C 1.53005 * 109.46645 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47174 * 60.00292 * 10 9 8 12 12 C 1.53002 * 109.46969 * 299.99805 * 11 10 9 13 13 C 1.52996 * 109.47147 * 60.00026 * 12 11 10 14 14 C 1.50696 * 109.47495 * 239.99997 * 2 1 3 15 15 O 1.20833 * 119.99595 * 239.99944 * 14 2 1 16 16 O 1.34224 * 120.00302 * 59.99416 * 14 2 1 17 17 C 1.45206 * 117.00077 * 180.02562 * 16 14 2 18 18 C 1.50699 * 109.47021 * 180.02562 * 17 16 14 19 19 O 1.21297 * 119.99980 * 359.97438 * 18 17 16 20 20 N 1.34779 * 120.00037 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99944 * 180.02562 * 20 18 17 22 22 H 1.08003 * 120.00055 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99682 * 179.97438 * 21 20 18 24 24 N 1.31418 * 119.99941 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 120.00091 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47394 * 90.00283 * 25 23 21 27 27 H 1.48507 * 109.46828 * 210.00133 * 25 23 21 28 28 H 1.48495 * 109.47159 * 329.99467 * 25 23 21 29 29 H 1.08994 * 109.47081 * 300.00323 * 1 2 3 30 30 H 1.08998 * 109.47013 * 60.00785 * 1 2 3 31 31 H 1.09005 * 109.46409 * 180.02562 * 1 2 3 32 32 H 0.96996 * 119.99197 * 95.00244 * 4 2 1 33 33 H 1.08996 * 109.47297 * 300.00134 * 7 5 4 34 34 H 1.09005 * 109.47317 * 60.00388 * 7 5 4 35 35 H 1.08999 * 109.47039 * 54.99907 * 8 7 5 36 36 H 1.08999 * 109.47397 * 299.99775 * 9 8 7 37 37 H 1.08996 * 109.47458 * 60.00691 * 9 8 7 38 38 H 1.08999 * 109.47039 * 299.99994 * 10 9 8 39 39 H 1.09006 * 109.46886 * 180.02562 * 10 9 8 40 40 H 1.08996 * 109.47239 * 179.97438 * 11 10 9 41 41 H 1.08999 * 109.47381 * 59.99911 * 11 10 9 42 42 H 1.08999 * 109.47156 * 300.00244 * 12 11 10 43 43 H 1.08999 * 109.46764 * 180.02562 * 12 11 10 44 44 H 1.08997 * 109.46979 * 179.97438 * 13 12 11 45 45 H 1.09005 * 109.47311 * 59.99947 * 13 12 11 46 46 H 1.09000 * 109.47070 * 300.00162 * 17 16 14 47 47 H 1.09001 * 109.46626 * 60.00180 * 17 16 14 48 48 H 0.96996 * 119.99844 * 359.97438 * 20 18 17 49 49 H 0.97002 * 120.00138 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1470 -0.0180 2.3571 6 8 1.8590 1.1588 2.4114 7 6 2.6489 -0.7285 3.5878 8 6 2.6998 0.2546 4.7591 9 6 3.7367 1.3414 4.4679 10 6 3.7871 2.3249 5.6390 11 6 4.1764 1.5777 6.9161 12 6 3.1396 0.4909 7.2072 13 6 3.0891 -0.4926 6.0362 14 6 2.0324 -0.7104 -1.2304 15 8 2.7271 -1.6928 -1.1194 16 8 1.7081 -0.2519 -2.4495 17 6 2.2270 -0.9865 -3.5896 18 6 1.7631 -0.3294 -4.8639 19 8 1.0635 0.6604 -4.8160 20 7 2.1245 -0.8420 -6.0568 21 6 1.7029 -0.2439 -7.2161 22 1 1.0808 0.6379 -7.1735 23 6 2.0761 -0.7722 -8.4459 24 7 1.6715 -0.1991 -9.5572 25 14 3.1527 -2.2969 -8.5195 26 1 2.2945 -3.5085 -8.5392 27 1 3.9824 -2.2579 -9.7506 28 1 4.0375 -2.3361 -7.3276 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0278 0.0005 32 1 2.2491 -1.6316 1.1527 33 1 1.9761 -1.5503 3.8327 34 1 3.6481 -1.1209 3.3987 35 1 1.7199 0.7134 4.8913 36 1 4.7166 0.8827 4.3358 37 1 3.4592 1.8741 3.5584 38 1 2.8072 2.7836 5.7707 39 1 4.5255 3.0994 5.4314 40 1 4.2128 2.2783 7.7502 41 1 5.1564 1.1190 6.7844 42 1 2.1596 0.9495 7.3389 43 1 3.4166 -0.0411 8.1173 44 1 2.3508 -1.2670 6.2438 45 1 4.0691 -0.9513 5.9044 46 1 3.3165 -0.9861 -3.5567 47 1 1.8628 -2.0133 -3.5563 48 1 2.6836 -1.6338 -6.0951 49 1 1.9317 -0.5681 -10.4158 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731245421.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:41 Heat of formation + Delta-G solvation = -182.862392 kcal Electronic energy + Delta-G solvation = -29093.705475 eV Core-core repulsion = 24826.980614 eV Total energy + Delta-G solvation = -4266.724862 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.98951 -40.14526 -38.61787 -38.28072 -36.50536 -35.31772 -34.10383 -33.15691 -31.84275 -31.25084 -31.01786 -28.68056 -27.46463 -25.21472 -24.20526 -22.94979 -22.24761 -20.85984 -20.56302 -20.03662 -19.70678 -18.67509 -18.12928 -17.19402 -16.85390 -16.54543 -15.80880 -15.76233 -15.62325 -15.36353 -14.90248 -14.57396 -14.46982 -14.38858 -14.27055 -13.81306 -13.69032 -13.22557 -12.99369 -12.78563 -12.59165 -12.51447 -12.39382 -12.34102 -12.27269 -12.20449 -12.00174 -11.77297 -11.42784 -11.30017 -11.27990 -10.77202 -10.68808 -10.65593 -10.64360 -10.58995 -10.37034 -10.08057 -9.91791 -9.71122 -9.49403 -8.71505 -8.32664 -6.42103 -3.95260 1.99532 2.13407 2.37737 2.95658 2.99539 3.01330 3.09792 3.50730 4.00637 4.16487 4.26637 4.31945 4.37246 4.58460 4.71198 4.75423 4.80495 4.87015 4.88454 5.02390 5.07305 5.12336 5.14780 5.22630 5.23992 5.27073 5.34714 5.37801 5.46273 5.48533 5.53246 5.58643 5.61890 5.72379 5.80991 5.85593 5.88176 5.94325 5.97051 6.01873 6.19512 6.20987 6.33064 7.13981 7.39870 7.57336 7.90447 7.97337 8.44119 8.80508 9.26401 9.61401 10.70068 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.030442 B = 0.001664 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.564316 B =16822.187011 C =16989.167798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.155 3.845 3 H 0.129 0.871 4 N -0.720 5.720 5 C 0.519 3.481 6 O -0.531 6.531 7 C -0.136 4.136 8 C -0.070 4.070 9 C -0.121 4.121 10 C -0.118 4.118 11 C -0.121 4.121 12 C -0.118 4.118 13 C -0.115 4.115 14 C 0.459 3.541 15 O -0.512 6.512 16 O -0.316 6.316 17 C 0.058 3.942 18 C 0.446 3.554 19 O -0.555 6.555 20 N -0.578 5.578 21 C -0.309 4.309 22 H 0.123 0.877 23 C 0.046 3.954 24 N -0.874 5.874 25 Si 0.879 3.121 26 H -0.269 1.269 27 H -0.274 1.274 28 H -0.268 1.268 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.410 0.590 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.373 0.627 49 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.323 -4.647 31.399 32.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.048 3.952 3 H 0.146 0.854 4 N -0.375 5.375 5 C 0.306 3.694 6 O -0.407 6.407 7 C -0.176 4.176 8 C -0.089 4.089 9 C -0.159 4.159 10 C -0.155 4.155 11 C -0.158 4.158 12 C -0.156 4.156 13 C -0.153 4.153 14 C 0.301 3.699 15 O -0.401 6.401 16 O -0.229 6.229 17 C -0.020 4.020 18 C 0.231 3.769 19 O -0.437 6.437 20 N -0.218 5.218 21 C -0.437 4.437 22 H 0.140 0.860 23 C -0.158 4.158 24 N -0.513 5.513 25 Si 0.705 3.295 26 H -0.194 1.194 27 H -0.199 1.199 28 H -0.194 1.194 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.246 0.754 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.206 0.794 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.838 -3.397 31.194 31.612 hybrid contribution 1.183 -1.957 -0.483 2.338 sum 5.021 -5.355 30.711 31.576 Atomic orbital electron populations 1.22132 0.91440 1.03363 1.04783 1.20314 0.96524 0.97873 0.80460 0.85386 1.45929 1.68146 1.14890 1.08551 1.20754 0.77073 0.87380 0.84209 1.90698 1.49321 1.15815 1.84857 1.21770 1.03299 0.99773 0.92793 1.20925 1.00728 0.94953 0.92330 1.21725 0.98025 0.96692 0.99436 1.21499 1.01566 0.97829 0.94620 1.21559 0.98851 0.97685 0.97742 1.21507 0.99601 0.96845 0.97642 1.21599 1.01584 0.97734 0.94347 1.23667 0.77548 0.82947 0.85775 1.90644 1.35989 1.26123 1.87379 1.86548 1.68373 1.54324 1.13653 1.22816 0.99734 0.95690 0.83743 1.19149 0.86679 0.87582 0.83477 1.90617 1.40130 1.26697 1.86266 1.42027 1.46941 1.27425 1.05429 1.19432 1.30662 1.12675 0.80967 0.85959 1.25038 0.97689 0.98170 0.94936 1.69615 1.44169 1.39882 0.97598 0.86679 0.80834 0.83280 0.78698 1.19403 1.19914 1.19391 0.90446 0.89284 0.91834 0.75383 0.88650 0.88638 0.90251 0.92680 0.89913 0.91971 0.92222 0.92320 0.92173 0.91974 0.92157 0.91980 0.91903 0.89292 0.89251 0.79403 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.42 37.16 0.35 -1.28 16 2 C 0.15 1.75 3.09 -69.08 -0.21 1.53 16 3 H 0.13 1.52 7.58 -51.92 -0.39 1.13 16 4 N -0.72 -6.75 4.95 -54.93 -0.27 -7.02 16 5 C 0.52 4.94 7.51 -10.99 -0.08 4.85 16 6 O -0.53 -6.71 13.63 5.56 0.08 -6.63 16 7 C -0.14 -0.87 5.18 -27.88 -0.14 -1.01 16 8 C -0.07 -0.50 1.84 -90.62 -0.17 -0.66 16 9 C -0.12 -0.99 4.94 -26.73 -0.13 -1.12 16 10 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 11 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16 12 C -0.12 -0.67 5.92 -26.73 -0.16 -0.83 16 13 C -0.12 -0.64 5.20 -26.73 -0.14 -0.78 16 14 C 0.46 6.38 7.32 36.00 0.26 6.64 16 15 O -0.51 -7.54 15.59 -18.76 -0.29 -7.83 16 16 O -0.32 -5.31 9.66 -45.89 -0.44 -5.76 16 17 C 0.06 0.99 5.94 36.01 0.21 1.20 16 18 C 0.45 10.07 7.86 -10.99 -0.09 9.98 16 19 O -0.56 -14.95 16.08 -14.12 -0.23 -15.18 16 20 N -0.58 -13.44 5.09 -10.96 -0.06 -13.49 16 21 C -0.31 -8.53 10.16 -14.93 -0.15 -8.69 16 22 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 23 C 0.05 1.22 5.50 -17.47 -0.10 1.13 16 24 N -0.87 -24.85 13.96 55.50 0.77 -24.07 16 25 Si 0.88 18.75 27.74 -169.99 -4.71 14.03 16 26 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 27 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 28 H -0.27 -5.21 6.52 56.52 0.37 -4.84 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.09 0.99 8.11 -51.93 -0.42 0.57 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.41 3.32 7.79 -40.82 -0.32 3.00 16 33 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.67 7.96 -51.93 -0.41 0.26 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.87 5.95 -51.93 -0.31 0.56 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.09 1.35 8.13 -51.93 -0.42 0.92 16 47 H 0.09 1.32 8.13 -51.93 -0.42 0.90 16 48 H 0.37 7.50 5.76 -40.82 -0.24 7.27 16 49 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 400.11 15.07 6.03 6.03 Total: -1.00 -33.33 400.11 -7.97 -41.31 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -7.99 Total: 9.59 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -0.86 Total: 9.03 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.45 Total: -44.58 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -0.89 Total: -35.40 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -4.71 Total: 14.03 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.33 -7.97 -41.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731245421.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.557 kcal (2) G-P(sol) polarization free energy of solvation -33.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds