Wall clock time and date at job start Wed Apr 1 2020 00:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46935 * 2 1 4 4 C 1.46507 * 119.99905 * 270.00100 * 3 2 1 5 5 C 1.50699 * 109.46814 * 269.99822 * 4 3 2 6 6 H 1.08002 * 120.00128 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99745 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99907 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99712 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47110 * 60.00447 * 9 7 5 11 11 H 1.48501 * 109.46915 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47315 * 299.99959 * 9 7 5 13 13 C 1.34776 * 120.00172 * 89.99979 * 3 2 1 14 14 O 1.21281 * 120.00160 * 179.97438 * 13 3 2 15 15 C 1.50693 * 119.99829 * 359.97438 * 13 3 2 16 16 O 1.45203 * 109.47382 * 180.02562 * 15 13 3 17 17 C 1.34231 * 117.00243 * 180.02562 * 16 15 13 18 18 O 1.20821 * 120.00081 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99678 * 179.97438 * 17 16 15 20 20 N 1.46500 * 110.43893 * 32.45602 * 19 17 16 21 21 C 1.34776 * 119.99652 * 302.53995 * 20 19 17 22 22 C 1.50696 * 119.99627 * 179.97438 * 21 20 19 23 23 O 1.21285 * 120.00204 * 0.02562 * 21 20 19 24 24 C 1.54893 * 110.48463 * 269.76900 * 19 17 16 25 25 C 1.54887 * 102.74533 * 203.38295 * 24 19 17 26 26 C 1.54266 * 104.19888 * 37.94403 * 25 24 19 27 27 C 1.53872 * 106.59640 * 336.38805 * 26 25 24 28 28 H 1.08999 * 109.47020 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47176 * 299.99944 * 1 2 3 30 30 H 1.09002 * 109.47201 * 60.00102 * 1 2 3 31 31 H 1.09000 * 109.46903 * 240.00120 * 2 1 3 32 32 H 1.09002 * 109.47201 * 119.99898 * 2 1 3 33 33 H 1.08994 * 109.47224 * 30.00228 * 4 3 2 34 34 H 1.09000 * 109.47078 * 150.00159 * 4 3 2 35 35 H 0.97000 * 119.99723 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.47572 * 59.99813 * 15 13 3 37 37 H 1.09002 * 109.47266 * 299.99962 * 15 13 3 38 38 H 0.97000 * 119.99888 * 122.53347 * 20 19 17 39 39 H 1.08998 * 109.47526 * 0.02562 * 22 21 20 40 40 H 1.09004 * 109.46812 * 120.00272 * 22 21 20 41 41 H 1.09003 * 109.47700 * 240.00228 * 22 21 20 42 42 H 1.09001 * 110.75228 * 85.07031 * 24 19 17 43 43 H 1.09000 * 110.75571 * 321.69664 * 24 19 17 44 44 H 1.09001 * 110.48816 * 279.26329 * 25 24 19 45 45 H 1.09004 * 110.48531 * 156.62545 * 25 24 19 46 46 H 1.09003 * 110.03179 * 95.67576 * 26 25 24 47 47 H 1.09003 * 110.02980 * 217.05505 * 26 25 24 48 48 H 1.09002 * 110.03208 * 119.28196 * 27 26 25 49 49 H 1.08996 * 110.03362 * 240.71095 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0961 7 6 4.1490 2.3897 -2.8780 8 7 3.3490 3.1257 -3.6181 9 14 5.9131 2.0956 -3.4176 10 1 6.1402 0.6388 -3.5948 11 1 6.1606 2.7957 -4.7036 12 1 6.8410 2.6190 -2.3830 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9912 1.3064 2.4722 16 8 2.3052 2.1961 3.5759 17 6 2.1342 1.7124 4.8163 18 8 1.7349 0.5832 4.9746 19 6 2.4403 2.5780 6.0114 20 7 2.1558 3.9834 5.7114 21 6 2.7659 4.5875 4.6725 22 6 2.4729 6.0331 4.3636 23 8 3.5500 3.9675 3.9857 24 6 3.9168 2.4012 6.4448 25 6 3.8886 2.8241 7.9345 26 6 2.5487 2.2689 8.4601 27 6 1.6278 2.1125 7.2374 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.5816 1.6878 -2.0284 34 1 2.0954 3.1411 -1.1385 35 1 3.6750 3.5162 -4.4440 36 1 2.6210 0.4187 2.5302 37 1 0.9431 1.0126 2.5298 38 1 1.5284 4.4792 6.2605 39 1 1.7501 6.4190 5.0824 40 1 3.3940 6.6123 4.4283 41 1 2.0630 6.1137 3.3568 42 1 4.5695 3.0576 5.8692 43 1 4.2270 1.3611 6.3442 44 1 3.9126 3.9102 8.0234 45 1 4.7242 2.3777 8.4737 46 1 2.7063 1.3006 8.9353 47 1 2.1091 2.9670 9.1727 48 1 1.3386 1.0682 7.1189 49 1 0.7409 2.7348 7.3558 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731255951.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:28 Heat of formation + Delta-G solvation = -153.891366 kcal Electronic energy + Delta-G solvation = -31604.702379 eV Core-core repulsion = 27339.233795 eV Total energy + Delta-G solvation = -4265.468584 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.16478 -39.44765 -38.70473 -37.68317 -36.07913 -35.14333 -33.61060 -32.77565 -30.44712 -30.08416 -29.20309 -28.97060 -27.83983 -26.40685 -23.26910 -22.96299 -22.15473 -21.61728 -20.41360 -19.66070 -18.51570 -18.10373 -17.02670 -16.56151 -16.48469 -16.27379 -16.03574 -15.77068 -15.39331 -15.07856 -14.78133 -14.34960 -14.24449 -13.70431 -13.65288 -13.36853 -13.17688 -12.97812 -12.71172 -12.51264 -12.30436 -12.04330 -12.01350 -11.97860 -11.79242 -11.66021 -11.63325 -11.53940 -11.39306 -11.15974 -10.89393 -10.85860 -10.77422 -10.51482 -10.47912 -10.38228 -10.07970 -9.60139 -9.53133 -9.15343 -8.79626 -8.38624 -7.63165 -5.99927 -4.04147 2.11727 2.57634 2.92393 3.09932 3.36057 3.40012 3.41023 3.47205 3.93275 4.02271 4.21028 4.48794 4.56854 4.81107 4.97221 5.02590 5.03841 5.06347 5.09388 5.21045 5.25631 5.27946 5.33365 5.34687 5.42480 5.47294 5.54190 5.56550 5.65600 5.69259 5.72294 5.79341 5.90472 5.96394 5.97399 6.05181 6.24609 6.32037 6.48703 6.51506 7.08768 7.46802 7.47257 7.57632 7.80748 7.97088 8.27954 8.41818 8.42340 8.94712 9.13196 9.60682 11.08162 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014448 B = 0.003167 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.464249 B = 8837.817151 C = 9613.842372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.103 3.897 3 N -0.597 5.597 4 C 0.251 3.749 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.506 3.494 14 O -0.504 6.504 15 C 0.042 3.958 16 O -0.288 6.288 17 C 0.459 3.541 18 O -0.517 6.517 19 C 0.186 3.814 20 N -0.727 5.727 21 C 0.498 3.502 22 C -0.165 4.165 23 O -0.476 6.476 24 C -0.123 4.123 25 C -0.119 4.119 26 C -0.122 4.122 27 C -0.121 4.121 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.033 0.967 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.401 0.599 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.099 0.901 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.395 -0.457 24.405 25.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.021 4.021 3 N -0.331 5.331 4 C 0.132 3.868 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.290 3.710 14 O -0.378 6.378 15 C -0.036 4.036 16 O -0.200 6.200 17 C 0.301 3.699 18 O -0.406 6.406 19 C 0.097 3.903 20 N -0.385 5.385 21 C 0.284 3.716 22 C -0.224 4.224 23 O -0.346 6.346 24 C -0.162 4.162 25 C -0.157 4.157 26 C -0.159 4.159 27 C -0.159 4.159 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.237 0.763 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.088 0.912 48 H 0.117 0.883 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.698 -0.486 23.658 24.339 hybrid contribution 0.466 -0.255 -0.253 0.588 sum -5.233 -0.741 23.404 23.994 Atomic orbital electron populations 1.22227 0.96727 1.01530 1.02276 1.21462 0.93600 0.84231 1.02821 1.48193 1.64460 1.13294 1.07165 1.19264 0.96283 0.93612 0.77650 1.21416 0.96945 1.31919 1.06207 0.92500 1.24919 0.97831 0.94908 0.96365 1.69921 1.35713 1.33491 1.14378 0.86562 0.84895 0.78223 0.77776 1.20273 1.21197 1.20121 1.19674 0.79858 0.87331 0.84133 1.90742 1.43311 1.17207 1.86493 1.22969 1.01892 0.93117 0.85599 1.86981 1.76735 1.42966 1.13356 1.24003 0.73597 0.86916 0.85404 1.90629 1.43074 1.20088 1.86815 1.20842 0.98197 0.81462 0.89807 1.46178 1.48272 1.10300 1.33783 1.20866 0.81427 0.89787 0.79478 1.21789 1.03770 0.92494 1.04383 1.90897 1.32528 1.64934 1.46256 1.22856 0.93385 1.03304 0.96617 1.22345 0.97497 1.01131 0.94715 1.22138 0.95204 1.01781 0.96795 1.22460 0.97906 1.04117 0.91377 0.92024 0.93269 0.91854 0.89595 0.91943 0.94858 0.93845 0.92709 0.89232 0.89500 0.76324 0.91346 0.89033 0.88293 0.88939 0.90091 0.91119 0.90895 0.91037 0.91186 0.88264 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 10.24 37.16 0.38 -2.02 16 2 C 0.10 1.75 5.93 -4.04 -0.02 1.73 16 3 N -0.60 -13.25 2.46 -175.06 -0.43 -13.68 16 4 C 0.25 6.72 5.16 -5.19 -0.03 6.70 16 5 C -0.53 -15.37 9.39 -34.44 -0.32 -15.70 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 8 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 9 Si 0.90 22.49 29.54 -169.99 -5.02 17.47 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 13 C 0.51 11.50 7.75 -10.99 -0.09 11.42 16 14 O -0.50 -13.65 16.08 -14.10 -0.23 -13.88 16 15 C 0.04 0.77 4.50 36.00 0.16 0.93 16 16 O -0.29 -5.38 5.80 -50.01 -0.29 -5.67 16 17 C 0.46 7.17 6.77 36.01 0.24 7.41 16 18 O -0.52 -8.50 15.36 -18.75 -0.29 -8.79 16 19 C 0.19 2.11 0.76 -131.31 -0.10 2.01 16 20 N -0.73 -7.33 5.11 -47.14 -0.24 -7.58 16 21 C 0.50 6.75 6.82 -10.99 -0.07 6.67 16 22 C -0.16 -1.68 10.39 36.00 0.37 -1.31 16 23 O -0.48 -9.04 12.79 -19.18 -0.25 -9.28 16 24 C -0.12 -1.34 5.72 -24.74 -0.14 -1.48 16 25 C -0.12 -0.87 6.79 -25.07 -0.17 -1.04 16 26 C -0.12 -0.76 6.80 -25.61 -0.17 -0.93 16 27 C -0.12 -0.98 5.98 -25.61 -0.15 -1.14 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.68 7.22 -51.93 -0.37 0.30 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.09 1.49 8.07 -51.93 -0.42 1.07 16 32 H 0.06 0.93 6.44 -51.93 -0.33 0.59 16 33 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.09 1.54 7.39 -51.93 -0.38 1.16 16 37 H 0.09 1.40 7.18 -51.93 -0.37 1.02 16 38 H 0.40 2.56 8.12 -40.82 -0.33 2.23 16 39 H 0.07 0.44 7.91 -51.93 -0.41 0.03 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.09 1.20 6.63 -51.93 -0.34 0.86 16 43 H 0.08 0.91 8.05 -51.93 -0.42 0.50 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.10 0.95 6.80 -51.93 -0.35 0.60 16 49 H 0.08 0.49 7.76 -51.93 -0.40 0.09 16 LS Contribution 398.53 15.07 6.01 6.01 Total: -1.00 -37.88 398.53 -8.09 -45.97 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.88 Total: 0.82 kcal Atomic # 6 Polarization: 15.16 SS G_CDS: -0.21 Total: 14.95 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: 0.07 Total: -47.59 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -1.05 Total: -37.61 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.88 -8.09 -45.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731255951.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.925 kcal (2) G-P(sol) polarization free energy of solvation -37.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds