Wall clock time and date at job start Wed Apr 1 2020 00:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46935 * 2 1 4 4 C 1.46507 * 119.99905 * 270.00100 * 3 2 1 5 5 C 1.50699 * 109.46814 * 269.99822 * 4 3 2 6 6 H 1.08002 * 120.00128 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99745 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99907 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99712 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47110 * 60.00447 * 9 7 5 11 11 H 1.48501 * 109.46915 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47315 * 299.99959 * 9 7 5 13 13 C 1.34776 * 120.00172 * 89.99979 * 3 2 1 14 14 O 1.21281 * 120.00160 * 179.97438 * 13 3 2 15 15 C 1.50693 * 119.99829 * 359.97438 * 13 3 2 16 16 O 1.45203 * 109.47382 * 180.02562 * 15 13 3 17 17 C 1.34231 * 117.00243 * 180.02562 * 16 15 13 18 18 O 1.20821 * 120.00081 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99678 * 179.97438 * 17 16 15 20 20 N 1.46500 * 110.43893 * 32.45602 * 19 17 16 21 21 C 1.34776 * 119.99652 * 302.53995 * 20 19 17 22 22 C 1.50696 * 119.99627 * 179.97438 * 21 20 19 23 23 O 1.21285 * 120.00204 * 0.02562 * 21 20 19 24 24 C 1.54893 * 110.48463 * 269.76900 * 19 17 16 25 25 C 1.54887 * 102.74533 * 203.38295 * 24 19 17 26 26 C 1.54266 * 104.19888 * 37.94403 * 25 24 19 27 27 C 1.53872 * 106.59640 * 336.38805 * 26 25 24 28 28 H 1.08999 * 109.47020 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47176 * 299.99944 * 1 2 3 30 30 H 1.09002 * 109.47201 * 60.00102 * 1 2 3 31 31 H 1.09000 * 109.46903 * 240.00120 * 2 1 3 32 32 H 1.09002 * 109.47201 * 119.99898 * 2 1 3 33 33 H 1.08994 * 109.47224 * 30.00228 * 4 3 2 34 34 H 1.09000 * 109.47078 * 150.00159 * 4 3 2 35 35 H 0.97000 * 119.99723 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.47572 * 59.99813 * 15 13 3 37 37 H 1.09002 * 109.47266 * 299.99962 * 15 13 3 38 38 H 0.97000 * 119.99888 * 122.53347 * 20 19 17 39 39 H 1.08998 * 109.47526 * 0.02562 * 22 21 20 40 40 H 1.09004 * 109.46812 * 120.00272 * 22 21 20 41 41 H 1.09003 * 109.47700 * 240.00228 * 22 21 20 42 42 H 1.09001 * 110.75228 * 85.07031 * 24 19 17 43 43 H 1.09000 * 110.75571 * 321.69664 * 24 19 17 44 44 H 1.09001 * 110.48816 * 279.26329 * 25 24 19 45 45 H 1.09004 * 110.48531 * 156.62545 * 25 24 19 46 46 H 1.09003 * 110.03179 * 95.67576 * 26 25 24 47 47 H 1.09003 * 110.02980 * 217.05505 * 26 25 24 48 48 H 1.09002 * 110.03208 * 119.28196 * 27 26 25 49 49 H 1.08996 * 110.03362 * 240.71095 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0961 7 6 4.1490 2.3897 -2.8780 8 7 3.3490 3.1257 -3.6181 9 14 5.9131 2.0956 -3.4176 10 1 6.1402 0.6388 -3.5948 11 1 6.1606 2.7957 -4.7036 12 1 6.8410 2.6190 -2.3830 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9912 1.3064 2.4722 16 8 2.3052 2.1961 3.5759 17 6 2.1342 1.7124 4.8163 18 8 1.7349 0.5832 4.9746 19 6 2.4403 2.5780 6.0114 20 7 2.1558 3.9834 5.7114 21 6 2.7659 4.5875 4.6725 22 6 2.4729 6.0331 4.3636 23 8 3.5500 3.9675 3.9857 24 6 3.9168 2.4012 6.4448 25 6 3.8886 2.8241 7.9345 26 6 2.5487 2.2689 8.4601 27 6 1.6278 2.1125 7.2374 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.5816 1.6878 -2.0284 34 1 2.0954 3.1411 -1.1385 35 1 3.6750 3.5162 -4.4440 36 1 2.6210 0.4187 2.5302 37 1 0.9431 1.0126 2.5298 38 1 1.5284 4.4792 6.2605 39 1 1.7501 6.4190 5.0824 40 1 3.3940 6.6123 4.4283 41 1 2.0630 6.1137 3.3568 42 1 4.5695 3.0576 5.8692 43 1 4.2270 1.3611 6.3442 44 1 3.9126 3.9102 8.0234 45 1 4.7242 2.3777 8.4737 46 1 2.7063 1.3006 8.9353 47 1 2.1091 2.9670 9.1727 48 1 1.3386 1.0682 7.1189 49 1 0.7409 2.7348 7.3558 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731255951.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:27 Heat of formation + Delta-G solvation = -179.074293 kcal Electronic energy + Delta-G solvation = -31605.794393 eV Core-core repulsion = 27339.233795 eV Total energy + Delta-G solvation = -4266.560597 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.27909 -40.87747 -40.15551 -38.68413 -37.39685 -36.91230 -34.95868 -34.54220 -31.80032 -31.35313 -30.50411 -29.87042 -28.85117 -28.19708 -25.04688 -24.33673 -23.59121 -22.47962 -21.11916 -20.77898 -20.18872 -19.26771 -18.66519 -18.22309 -17.76371 -17.63134 -17.51629 -17.02799 -16.74383 -16.28899 -15.95519 -15.88081 -15.69998 -14.98637 -14.78836 -14.58376 -14.49976 -14.36410 -13.95677 -13.78748 -13.60820 -13.46086 -13.30059 -13.22191 -13.10482 -12.96045 -12.69198 -12.66208 -12.55006 -12.42420 -12.25409 -12.22750 -12.05902 -12.04228 -11.80750 -11.74379 -11.69994 -11.29813 -10.66451 -10.65602 -10.64581 -10.15042 -9.52745 -8.24993 -6.39438 0.93281 1.30098 1.34004 1.38812 1.45997 1.66435 1.85740 2.21097 2.31640 2.44310 3.04453 3.22659 3.42660 3.47621 3.60782 3.85623 3.92401 4.00473 4.10371 4.23210 4.27286 4.34281 4.37908 4.41596 4.52587 4.54130 4.63646 4.69678 4.77410 4.85406 4.90665 4.94535 4.99573 5.03373 5.12972 5.15213 5.17324 5.24342 5.30131 5.31503 5.41730 5.47190 5.53055 5.79835 6.03320 6.51255 6.64026 6.66076 6.69702 7.23053 7.38300 7.46126 8.82175 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014448 B = 0.003167 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.464249 B = 8837.817151 C = 9613.842372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.095 3.905 3 N -0.599 5.599 4 C 0.267 3.733 5 C -0.547 4.547 6 H 0.049 0.951 7 C 0.011 3.989 8 N -0.926 5.926 9 Si 0.966 3.034 10 H -0.259 1.259 11 H -0.274 1.274 12 H -0.281 1.281 13 C 0.498 3.502 14 O -0.559 6.559 15 C 0.053 3.947 16 O -0.310 6.310 17 C 0.451 3.549 18 O -0.528 6.528 19 C 0.183 3.817 20 N -0.706 5.706 21 C 0.492 3.508 22 C -0.160 4.160 23 O -0.538 6.538 24 C -0.127 4.127 25 C -0.111 4.111 26 C -0.113 4.113 27 C -0.114 4.114 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.029 0.971 34 H -0.002 1.002 35 H 0.268 0.732 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.423 0.577 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.077 0.923 47 H 0.097 0.903 48 H 0.086 0.914 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.061 -1.351 27.122 28.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.027 4.027 3 N -0.332 5.332 4 C 0.147 3.853 5 C -0.586 4.586 6 H 0.067 0.933 7 C -0.189 4.189 8 N -0.565 5.565 9 Si 0.790 3.210 10 H -0.184 1.184 11 H -0.199 1.199 12 H -0.207 1.207 13 C 0.284 3.716 14 O -0.437 6.437 15 C -0.024 4.024 16 O -0.223 6.223 17 C 0.294 3.706 18 O -0.418 6.418 19 C 0.093 3.907 20 N -0.365 5.365 21 C 0.279 3.721 22 C -0.219 4.219 23 O -0.413 6.413 24 C -0.165 4.165 25 C -0.148 4.148 26 C -0.151 4.151 27 C -0.152 4.152 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.047 0.953 34 H 0.016 0.984 35 H 0.077 0.923 36 H 0.120 0.880 37 H 0.132 0.868 38 H 0.262 0.738 39 H 0.132 0.868 40 H 0.116 0.884 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.096 0.904 47 H 0.116 0.884 48 H 0.104 0.896 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.430 -1.419 26.428 27.236 hybrid contribution 0.640 0.007 -1.080 1.256 sum -5.789 -1.411 25.348 26.039 Atomic orbital electron populations 1.22153 0.94167 1.03757 1.01757 1.21811 0.95683 0.81242 1.03963 1.48200 1.64210 1.15143 1.05689 1.18724 0.95387 0.91532 0.79691 1.21671 0.97937 1.32340 1.06639 0.93265 1.25822 1.02370 0.94371 0.96304 1.70031 1.37739 1.33969 1.14781 0.85499 0.79001 0.79106 0.77386 1.18388 1.19868 1.20721 1.20455 0.78609 0.86894 0.85607 1.90709 1.45782 1.19748 1.87453 1.22779 1.03601 0.92444 0.83620 1.87035 1.77314 1.43567 1.14396 1.24960 0.72870 0.87550 0.85251 1.90605 1.43642 1.20704 1.86821 1.21128 0.99249 0.81321 0.88971 1.45975 1.47670 1.09887 1.32963 1.21472 0.80494 0.90810 0.79278 1.21779 1.05254 0.90657 1.04205 1.90877 1.35360 1.66512 1.48515 1.22854 0.92516 1.02100 0.99059 1.22337 0.98845 1.01867 0.91758 1.22140 0.93864 1.02886 0.96177 1.22513 0.98790 1.03665 0.90234 0.88330 0.92697 0.93484 0.90065 0.89168 0.95284 0.98370 0.92275 0.88026 0.86822 0.73757 0.86772 0.88408 0.90750 0.91725 0.91234 0.90132 0.89863 0.90408 0.88408 0.89571 0.87734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.31 10.24 71.98 0.74 -3.57 16 2 C 0.10 3.18 5.93 86.38 0.51 3.69 16 3 N -0.60 -27.49 2.46 -826.16 -2.03 -29.52 16 4 C 0.27 15.11 5.16 85.63 0.44 15.55 16 5 C -0.55 -33.14 9.39 25.60 0.24 -32.89 16 6 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.63 5.46 84.66 0.46 1.09 16 8 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 9 Si 0.97 46.75 29.54 68.60 2.03 48.78 16 10 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 13 C 0.50 23.57 7.75 87.65 0.68 24.25 16 14 O -0.56 -32.31 16.08 15.76 0.25 -32.05 16 15 C 0.05 1.95 4.50 71.23 0.32 2.27 16 16 O -0.31 -11.85 5.80 -41.15 -0.24 -12.08 16 17 C 0.45 13.97 6.77 71.24 0.48 14.46 16 18 O -0.53 -16.93 15.36 21.98 0.34 -16.59 16 19 C 0.18 3.94 0.76 3.93 0.00 3.94 16 20 N -0.71 -13.25 5.11 -421.43 -2.15 -15.40 16 21 C 0.49 13.48 6.82 87.66 0.60 14.08 16 22 C -0.16 -3.20 10.39 71.23 0.74 -2.46 16 23 O -0.54 -21.59 12.79 20.60 0.26 -21.33 16 24 C -0.13 -2.72 5.72 31.89 0.18 -2.54 16 25 C -0.11 -1.35 6.79 31.67 0.22 -1.13 16 26 C -0.11 -0.99 6.80 31.32 0.21 -0.78 16 27 C -0.11 -1.53 5.98 31.32 0.19 -1.34 16 28 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.05 1.41 7.22 -2.39 -0.02 1.40 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 2.79 8.07 -2.39 -0.02 2.77 16 32 H 0.09 2.52 6.44 -2.39 -0.02 2.50 16 33 H 0.03 1.64 8.07 -2.39 -0.02 1.62 16 34 H 0.00 -0.12 7.42 -2.39 -0.02 -0.14 16 35 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 36 H 0.10 3.46 7.39 -2.39 -0.02 3.44 16 37 H 0.11 3.52 7.18 -2.39 -0.02 3.50 16 38 H 0.42 4.08 8.12 -92.71 -0.75 3.33 16 39 H 0.11 1.16 7.91 -2.39 -0.02 1.14 16 40 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.06 1.76 6.63 -2.39 -0.02 1.74 16 43 H 0.07 1.61 8.05 -2.39 -0.02 1.59 16 44 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 45 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 46 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.09 1.45 6.80 -2.39 -0.02 1.43 16 49 H 0.10 0.86 7.76 -2.39 -0.02 0.84 16 Total: -1.00 -89.13 398.53 4.97 -84.16 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.21 Total: 16.53 kcal Atomic # 6 Polarization: 28.60 SS G_CDS: 6.01 Total: 34.61 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -3.90 Total: -102.02 kcal Atomic # 8 Polarization: -82.68 SS G_CDS: 0.62 Total: -82.06 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -89.13 4.97 -84.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731255951.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.915 kcal (2) G-P(sol) polarization free energy of solvation -89.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds