Wall clock time and date at job start Tue Mar 31 2020 23:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47370 * 2 1 4 4 C 1.53009 * 109.47221 * 240.00324 * 2 1 3 5 5 C 1.50696 * 109.47037 * 174.99795 * 4 2 1 6 6 O 1.21294 * 120.00295 * 354.44231 * 5 4 2 7 7 N 1.34776 * 119.99815 * 174.43479 * 5 4 2 8 8 C 1.37105 * 120.00127 * 5.02125 * 7 5 4 9 9 H 1.08002 * 119.99507 * 22.99539 * 8 7 5 10 10 C 1.38941 * 120.00269 * 202.99275 * 8 7 5 11 11 N 1.31411 * 120.00097 * 351.25680 * 10 8 7 12 12 Si 1.86795 * 120.00130 * 171.25873 * 10 8 7 13 13 H 1.48501 * 109.47163 * 90.00097 * 12 10 8 14 14 H 1.48507 * 109.47094 * 210.00066 * 12 10 8 15 15 H 1.48501 * 109.47300 * 329.99810 * 12 10 8 16 16 C 1.46501 * 120.00284 * 185.01902 * 7 5 4 17 17 C 1.50704 * 109.47034 * 90.00107 * 16 7 5 18 18 O 1.20823 * 119.99956 * 0.02562 * 17 16 7 19 19 O 1.34226 * 119.99839 * 180.02562 * 17 16 7 20 20 N 1.46504 * 109.47330 * 120.00297 * 2 1 3 21 21 C 1.34777 * 119.99597 * 274.99852 * 20 2 1 22 22 O 1.21280 * 120.00281 * 0.02562 * 21 20 2 23 23 C 1.50703 * 119.99661 * 179.97438 * 21 20 2 24 24 C 1.53000 * 109.47323 * 300.00642 * 23 21 20 25 25 C 1.52999 * 109.47205 * 179.97438 * 24 23 21 26 26 C 1.53003 * 109.47212 * 59.99442 * 25 24 23 27 27 C 1.52998 * 109.47137 * 300.00475 * 26 25 24 28 28 C 1.52993 * 109.47091 * 180.02562 * 23 21 20 29 29 H 1.08996 * 109.46983 * 59.99919 * 1 2 3 30 30 H 1.08996 * 109.47035 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46898 * 300.00053 * 1 2 3 32 32 H 1.09003 * 109.46770 * 294.99810 * 4 2 1 33 33 H 1.09005 * 109.46808 * 54.99826 * 4 2 1 34 34 H 0.97001 * 120.00495 * 185.01121 * 11 10 8 35 35 H 1.08999 * 109.47204 * 210.00038 * 16 7 5 36 36 H 1.09000 * 109.46992 * 330.00512 * 16 7 5 37 37 H 0.96697 * 117.00153 * 180.02562 * 19 17 16 38 38 H 0.96994 * 119.99948 * 95.27309 * 20 2 1 39 39 H 1.09005 * 109.46931 * 60.00209 * 23 21 20 40 40 H 1.08998 * 109.47081 * 299.99481 * 24 23 21 41 41 H 1.09000 * 109.47588 * 59.99895 * 24 23 21 42 42 H 1.09005 * 109.47021 * 299.99551 * 25 24 23 43 43 H 1.08997 * 109.47515 * 179.97438 * 25 24 23 44 44 H 1.08996 * 109.47354 * 179.97438 * 26 25 24 45 45 H 1.09004 * 109.46532 * 60.00008 * 26 25 24 46 46 H 1.09004 * 109.47028 * 299.99229 * 27 26 25 47 47 H 1.08997 * 109.47098 * 180.02562 * 27 26 25 48 48 H 1.09000 * 109.47641 * 300.00491 * 28 23 21 49 49 H 1.08998 * 109.47091 * 60.00654 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 8 4.1368 0.0631 -0.5017 7 7 4.2242 -1.2730 -2.2708 8 6 3.5473 -1.9553 -3.2486 9 1 2.5297 -1.6854 -3.4895 10 6 4.1705 -2.9939 -3.9294 11 7 5.4555 -3.2118 -3.7617 12 14 3.1818 -4.0802 -5.0833 13 1 3.2055 -3.5008 -6.4505 14 1 3.7754 -5.4411 -5.1121 15 1 1.7784 -4.1624 -4.6048 16 6 5.6892 -1.2595 -2.2673 17 6 6.2004 -2.4229 -1.4572 18 8 5.4210 -3.1854 -0.9366 19 8 7.5215 -2.6120 -1.3141 20 7 2.0184 -0.6907 1.1961 21 6 2.1471 -0.0183 2.3571 22 8 1.8583 1.1583 2.4117 23 6 2.6490 -0.7289 3.5877 24 6 1.7046 -1.8825 3.9313 25 6 2.2144 -2.6043 5.1803 26 6 2.2665 -1.6215 6.3517 27 6 3.2110 -0.4680 6.0080 28 6 2.7000 0.2540 4.7590 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.7517 -1.7715 -1.2057 33 1 1.6054 -0.2616 -2.1371 34 1 5.9057 -3.8890 -4.2906 35 1 6.0557 -1.3404 -3.2907 36 1 6.0428 -0.3271 -1.8273 37 1 7.8015 -3.3720 -0.7859 38 1 2.2529 -1.6308 1.1516 39 1 3.6482 -1.1214 3.3985 40 1 0.7054 -1.4901 4.1205 41 1 1.6678 -2.5829 3.0969 42 1 3.2135 -2.9969 4.9906 43 1 1.5414 -3.4259 5.4254 44 1 2.6293 -2.1358 7.2416 45 1 1.2675 -1.2290 6.5413 46 1 4.2100 -0.8605 5.8185 47 1 3.2484 0.2319 6.8428 48 1 3.3726 1.0762 4.5145 49 1 1.7007 0.6461 4.9481 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736544755.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:37 Heat of formation + Delta-G solvation = -203.732342 kcal Electronic energy + Delta-G solvation = -31587.926629 eV Core-core repulsion = 27320.296779 eV Total energy + Delta-G solvation = -4267.629850 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.43235 -41.01743 -39.99252 -38.58685 -37.19697 -36.51572 -36.27033 -33.45562 -33.11873 -31.67091 -31.36328 -30.23573 -28.25484 -26.49518 -24.93724 -23.52626 -23.03666 -22.00571 -21.33501 -21.04705 -20.58305 -19.01912 -18.73624 -18.03454 -17.92298 -17.44993 -17.15936 -16.29849 -16.19163 -16.13642 -16.02099 -15.79020 -15.37128 -15.02877 -15.01731 -14.82340 -14.48767 -13.95580 -13.84112 -13.77170 -13.38032 -13.26884 -13.24690 -13.09801 -12.97528 -12.82234 -12.74934 -12.65593 -12.47503 -12.22584 -12.13299 -12.10666 -12.06253 -11.86212 -11.53461 -11.45018 -11.36510 -11.02136 -10.93007 -10.56482 -10.45762 -9.95597 -9.86790 -8.31513 -5.99442 1.42852 1.50102 1.59918 1.73786 1.77216 1.93532 2.26447 2.34026 2.56142 2.96621 3.20861 3.63250 3.73085 3.78984 3.90081 4.09602 4.25160 4.27114 4.33220 4.34327 4.43685 4.44587 4.54597 4.58006 4.65081 4.70134 4.70998 4.83298 4.86874 4.90275 4.94764 5.01906 5.10443 5.12975 5.16682 5.23163 5.24537 5.32750 5.34928 5.38014 5.44651 5.53804 5.64883 5.76156 5.93427 6.35910 6.62873 7.09503 7.34234 7.40757 7.51261 7.91111 8.69917 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012863 B = 0.003450 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.293433 B = 8114.953635 C = 8877.705601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.159 3.841 3 H 0.057 0.943 4 C -0.118 4.118 5 C 0.459 3.541 6 O -0.624 6.624 7 N -0.446 5.446 8 C -0.340 4.340 9 H 0.121 0.879 10 C -0.001 4.001 11 N -0.908 5.908 12 Si 0.996 3.004 13 H -0.270 1.270 14 H -0.295 1.295 15 H -0.256 1.256 16 C 0.151 3.849 17 C 0.508 3.492 18 O -0.556 6.556 19 O -0.524 6.524 20 N -0.705 5.705 21 C 0.516 3.484 22 O -0.589 6.589 23 C -0.103 4.103 24 C -0.104 4.104 25 C -0.116 4.116 26 C -0.117 4.117 27 C -0.116 4.116 28 C -0.094 4.094 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.271 0.729 35 H 0.130 0.870 36 H 0.073 0.927 37 H 0.410 0.590 38 H 0.401 0.599 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.075 0.925 48 H 0.045 0.955 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.445 -1.906 10.448 12.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.054 3.946 3 H 0.075 0.925 4 C -0.158 4.158 5 C 0.250 3.750 6 O -0.511 6.511 7 N -0.165 5.165 8 C -0.467 4.467 9 H 0.138 0.862 10 C -0.202 4.202 11 N -0.549 5.549 12 Si 0.820 3.180 13 H -0.195 1.195 14 H -0.221 1.221 15 H -0.180 1.180 16 C 0.025 3.975 17 C 0.352 3.648 18 O -0.446 6.446 19 O -0.336 6.336 20 N -0.354 5.354 21 C 0.304 3.696 22 O -0.469 6.469 23 C -0.124 4.124 24 C -0.141 4.141 25 C -0.154 4.154 26 C -0.155 4.155 27 C -0.153 4.153 28 C -0.132 4.132 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.120 0.880 33 H 0.134 0.866 34 H 0.081 0.919 35 H 0.148 0.852 36 H 0.091 0.909 37 H 0.269 0.731 38 H 0.236 0.764 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.093 0.907 48 H 0.064 0.936 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.573 -0.786 10.707 12.588 hybrid contribution 0.648 -1.401 -0.739 1.711 sum -5.926 -2.187 9.969 11.801 Atomic orbital electron populations 1.22059 0.92660 1.03196 1.02658 1.20665 0.94669 0.96086 0.83188 0.92521 1.21739 0.91252 1.03476 0.99310 1.20984 0.91408 0.82179 0.80447 1.90563 1.71913 1.45686 1.42929 1.43576 1.03418 1.45574 1.23940 1.20100 1.00290 1.12078 1.14223 0.86185 1.26119 0.96699 0.97187 1.00148 1.69697 1.09925 1.34269 1.40995 0.84863 0.78667 0.76697 0.77773 1.19526 1.22092 1.17988 1.20545 0.83356 0.92068 1.01525 1.23676 0.79299 0.86436 0.75415 1.90492 1.58152 1.47266 1.48679 1.84468 1.26265 1.52537 1.70287 1.45943 1.66114 1.13972 1.09356 1.21083 0.76316 0.86742 0.85448 1.90603 1.52604 1.17669 1.86067 1.21361 1.01112 0.97715 0.92223 1.21501 0.98038 0.95227 0.99383 1.21542 1.01835 0.98125 0.93857 1.21555 0.99851 0.95932 0.98139 1.21561 0.99372 0.97922 0.96476 1.21287 1.01606 0.96565 0.93740 0.89836 0.90724 0.93269 0.88014 0.86593 0.91911 0.85208 0.90901 0.73126 0.76396 0.89325 0.91365 0.91193 0.91865 0.90090 0.90384 0.91676 0.91932 0.90682 0.93569 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 9.48 71.98 0.68 -3.13 16 2 C 0.16 5.37 2.14 44.99 0.10 5.47 16 3 H 0.06 2.33 7.31 -2.39 -0.02 2.31 16 4 C -0.12 -4.13 3.79 29.85 0.11 -4.01 16 5 C 0.46 20.92 7.44 87.66 0.65 21.57 16 6 O -0.62 -31.97 15.01 -3.07 -0.05 -32.02 16 7 N -0.45 -21.28 2.11 -639.59 -1.35 -22.63 16 8 C -0.34 -15.74 8.99 84.04 0.76 -14.98 16 9 H 0.12 4.96 6.73 -2.91 -0.02 4.94 16 10 C 0.00 -0.07 5.41 84.92 0.46 0.39 16 11 N -0.91 -44.64 8.21 21.66 0.18 -44.46 16 12 Si 1.00 37.39 29.56 68.60 2.03 39.42 16 13 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 14 H -0.29 -11.58 7.11 99.48 0.71 -10.87 16 15 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 16 C 0.15 7.20 5.29 85.63 0.45 7.65 16 17 C 0.51 24.17 6.29 71.24 0.45 24.61 16 18 O -0.56 -29.19 16.95 21.97 0.37 -28.82 16 19 O -0.52 -20.49 13.42 -51.38 -0.69 -21.18 16 20 N -0.70 -23.78 4.25 -442.50 -1.88 -25.66 16 21 C 0.52 18.23 7.12 87.66 0.62 18.85 16 22 O -0.59 -24.87 15.65 -3.03 -0.05 -24.92 16 23 C -0.10 -2.84 2.53 -11.54 -0.03 -2.87 16 24 C -0.10 -2.20 5.10 30.59 0.16 -2.05 16 25 C -0.12 -1.98 5.92 30.59 0.18 -1.80 16 26 C -0.12 -1.87 5.92 30.59 0.18 -1.69 16 27 C -0.12 -2.22 5.93 30.61 0.18 -2.03 16 28 C -0.09 -2.44 4.49 30.61 0.14 -2.30 16 29 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 31 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.10 3.39 8.02 -2.39 -0.02 3.37 16 33 H 0.12 3.55 7.76 -2.38 -0.02 3.53 16 34 H 0.27 12.90 8.32 -92.71 -0.77 12.13 16 35 H 0.13 6.33 6.28 -2.39 -0.01 6.31 16 36 H 0.07 3.43 7.36 -2.39 -0.02 3.42 16 37 H 0.41 12.09 9.10 -74.06 -0.67 11.41 16 38 H 0.40 12.80 8.03 -92.71 -0.74 12.06 16 39 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 40 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.07 1.45 7.57 -2.39 -0.02 1.43 16 42 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.05 1.38 8.10 -2.39 -0.02 1.36 16 49 H 0.06 1.65 8.10 -2.39 -0.02 1.63 16 Total: -1.00 -68.76 394.57 3.21 -65.55 By element: Atomic # 1 Polarization: 51.48 SS G_CDS: -0.45 Total: 51.03 kcal Atomic # 6 Polarization: 38.60 SS G_CDS: 5.09 Total: 43.70 kcal Atomic # 7 Polarization: -89.70 SS G_CDS: -3.05 Total: -92.76 kcal Atomic # 8 Polarization: -106.53 SS G_CDS: -0.41 Total: -106.94 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.42 kcal Total: -68.76 3.21 -65.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736544755.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.181 kcal (2) G-P(sol) polarization free energy of solvation -68.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds