Wall clock time and date at job start Tue Mar 31 2020 23:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47173 * 2 1 4 4 N 1.46491 * 109.47016 * 239.99432 * 2 1 3 5 5 C 1.34783 * 120.00000 * 85.00474 * 4 2 1 6 6 O 1.21277 * 120.00045 * 359.97438 * 5 4 2 7 7 C 1.50695 * 119.99969 * 179.97438 * 5 4 2 8 8 C 1.53003 * 109.47266 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47153 * 295.00745 * 8 7 5 10 10 C 1.53003 * 109.47153 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47296 * 59.99226 * 10 9 8 12 12 C 1.52999 * 109.47147 * 300.00431 * 11 10 9 13 13 C 1.52996 * 109.47300 * 60.00100 * 12 11 10 14 14 C 1.50701 * 109.46743 * 119.99390 * 2 1 3 15 15 O 1.21291 * 119.99522 * 89.70041 * 14 2 1 16 16 N 1.34776 * 120.00452 * 269.70200 * 14 2 1 17 17 C 1.37096 * 120.00257 * 185.27502 * 16 14 2 18 18 H 1.07997 * 120.00055 * 18.66310 * 17 16 14 19 19 C 1.38945 * 119.99954 * 198.67108 * 17 16 14 20 20 N 1.31413 * 120.00175 * 15.61272 * 19 17 16 21 21 Si 1.86800 * 119.99949 * 195.61629 * 19 17 16 22 22 H 1.48506 * 109.47081 * 89.99878 * 21 19 17 23 23 H 1.48508 * 109.47231 * 209.99761 * 21 19 17 24 24 H 1.48494 * 109.47037 * 329.99770 * 21 19 17 25 25 C 1.46504 * 119.99591 * 5.27204 * 16 14 2 26 26 C 1.50699 * 109.47130 * 87.18849 * 25 16 14 27 27 O 1.20828 * 120.00063 * 359.97438 * 26 25 16 28 28 O 1.34228 * 120.00099 * 179.97438 * 26 25 16 29 29 H 1.08997 * 109.47410 * 187.95463 * 1 2 3 30 30 H 1.09001 * 109.47252 * 307.96065 * 1 2 3 31 31 H 1.09000 * 109.46638 * 67.95587 * 1 2 3 32 32 H 0.97001 * 120.00007 * 265.00161 * 4 2 1 33 33 H 1.08997 * 109.47770 * 300.00303 * 7 5 4 34 34 H 1.09007 * 109.47141 * 60.00263 * 7 5 4 35 35 H 1.09001 * 109.46679 * 55.00312 * 8 7 5 36 36 H 1.09001 * 109.46975 * 299.99386 * 9 8 7 37 37 H 1.09000 * 109.47598 * 59.99310 * 9 8 7 38 38 H 1.09001 * 109.46679 * 299.99567 * 10 9 8 39 39 H 1.08996 * 109.47228 * 179.97438 * 10 9 8 40 40 H 1.08996 * 109.47005 * 180.02562 * 11 10 9 41 41 H 1.09001 * 109.46978 * 60.00525 * 11 10 9 42 42 H 1.08993 * 109.47184 * 299.99299 * 12 11 10 43 43 H 1.09000 * 109.46511 * 179.97438 * 12 11 10 44 44 H 1.08996 * 109.47154 * 179.97438 * 13 12 11 45 45 H 1.09001 * 109.47110 * 59.99731 * 13 12 11 46 46 H 0.97003 * 119.99930 * 179.97438 * 20 19 17 47 47 H 1.09003 * 109.46723 * 207.18695 * 25 16 14 48 48 H 1.08999 * 109.47378 * 327.18732 * 25 16 14 49 49 H 0.96700 * 117.00312 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 2.1471 -0.0184 -2.3571 6 8 1.8583 1.1582 -2.4118 7 6 2.6500 -0.7288 -3.5873 8 6 2.7008 0.2541 -4.7588 9 6 1.2816 0.7084 -5.1053 10 6 1.3324 1.6907 -6.2773 11 6 1.9589 1.0034 -7.4921 12 6 3.3781 0.5491 -7.1455 13 6 3.3273 -0.4333 -5.9737 14 6 2.0323 -0.7103 1.2306 15 8 2.2292 -1.9068 1.2022 16 7 2.2626 -0.0161 2.3626 17 6 2.8210 -0.6404 3.4480 18 1 3.3476 -1.5748 3.3217 19 6 2.7093 -0.0710 4.7105 20 7 1.8291 0.8805 4.9266 21 14 3.8105 -0.6580 6.1005 22 1 5.0569 0.1491 6.1192 23 1 3.0998 -0.5011 7.3950 24 1 4.1501 -2.0886 5.8926 25 6 1.9163 1.4056 2.4332 26 6 0.4794 1.5519 2.8630 27 8 -0.1873 0.5694 3.0869 28 8 -0.0600 2.7737 2.9972 29 1 -0.3634 -1.0177 0.1422 30 1 -0.3634 0.6321 0.8102 31 1 -0.3632 0.3857 -0.9526 32 1 2.2490 -1.6319 -1.1524 33 1 3.6492 -1.1207 -3.3978 34 1 1.9777 -1.5511 -3.8324 35 1 3.3018 1.1199 -4.4808 36 1 0.6806 -0.1574 -5.3834 37 1 0.8351 1.1977 -4.2397 38 1 1.9335 2.5566 -5.9997 39 1 0.3213 2.0141 -6.5244 40 1 1.9955 1.7034 -8.3268 41 1 1.3578 0.1375 -7.7698 42 1 3.9792 1.4149 -6.8680 43 1 3.8242 0.0590 -8.0109 44 1 4.3384 -0.7573 -5.7271 45 1 2.7262 -1.2992 -6.2513 46 1 1.7509 1.2778 5.8081 47 1 2.5641 1.9018 3.1560 48 1 2.0503 1.8614 1.4522 49 1 -0.9853 2.8171 3.2747 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736631162.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:21 Heat of formation + Delta-G solvation = -177.095563 kcal Electronic energy + Delta-G solvation = -31131.421770 eV Core-core repulsion = 26864.946977 eV Total energy + Delta-G solvation = -4266.474793 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.19416 -39.46514 -38.49248 -37.83478 -35.42563 -34.72046 -34.23302 -32.81733 -31.92692 -30.79921 -30.28397 -27.77039 -27.07665 -25.42712 -23.39492 -22.69797 -21.71358 -21.13052 -20.05509 -19.79371 -19.15139 -17.34246 -17.18090 -16.85613 -16.06212 -15.83698 -15.54951 -15.43441 -15.11655 -14.68641 -14.55426 -14.25138 -14.24216 -14.15410 -13.82459 -13.63667 -13.23587 -12.77759 -12.57827 -12.36255 -12.23388 -12.07980 -11.86244 -11.81308 -11.74369 -11.58822 -11.42656 -11.20762 -11.12546 -11.03635 -10.99129 -10.53605 -10.47913 -10.41773 -10.35533 -10.28002 -10.12372 -9.66867 -9.43547 -9.13709 -8.92698 -8.52556 -8.02714 -6.53507 -4.03207 2.84743 3.06001 3.18155 3.22972 3.30981 3.44264 3.58829 4.03215 4.21538 4.53587 4.61381 4.61793 4.65228 4.93487 4.97386 5.01529 5.13495 5.24891 5.34428 5.39147 5.40141 5.43574 5.49534 5.52976 5.57938 5.66264 5.69626 5.80062 5.88509 5.91785 6.01763 6.05565 6.08137 6.10734 6.18744 6.19121 6.40820 6.42494 6.45452 6.53101 6.56930 6.74305 7.42385 7.52895 7.78018 7.86463 8.23851 8.47741 8.94735 9.03314 9.19126 9.66660 10.54729 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019697 B = 0.002651 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.222413 B =10560.895866 C =11349.623359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.126 3.874 3 H 0.097 0.903 4 N -0.709 5.709 5 C 0.512 3.488 6 O -0.544 6.544 7 C -0.138 4.138 8 C -0.069 4.069 9 C -0.121 4.121 10 C -0.117 4.117 11 C -0.120 4.120 12 C -0.118 4.118 13 C -0.115 4.115 14 C 0.454 3.546 15 O -0.574 6.574 16 N -0.423 5.423 17 C -0.303 4.303 18 H 0.108 0.892 19 C 0.031 3.969 20 N -0.884 5.884 21 Si 0.937 3.063 22 H -0.276 1.276 23 H -0.284 1.284 24 H -0.269 1.269 25 C 0.141 3.859 26 C 0.496 3.504 27 O -0.502 6.502 28 O -0.534 6.534 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.408 0.592 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.273 0.727 47 H 0.128 0.872 48 H 0.079 0.921 49 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.714 2.890 -17.560 17.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.018 3.982 3 H 0.115 0.885 4 N -0.362 5.362 5 C 0.299 3.701 6 O -0.422 6.422 7 C -0.178 4.178 8 C -0.088 4.088 9 C -0.158 4.158 10 C -0.155 4.155 11 C -0.158 4.158 12 C -0.156 4.156 13 C -0.153 4.153 14 C 0.242 3.758 15 O -0.458 6.458 16 N -0.141 5.141 17 C -0.430 4.430 18 H 0.125 0.875 19 C -0.172 4.172 20 N -0.524 5.524 21 Si 0.764 3.236 22 H -0.202 1.202 23 H -0.209 1.209 24 H -0.193 1.193 25 C 0.015 3.985 26 C 0.336 3.664 27 O -0.387 6.387 28 O -0.345 6.345 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.244 0.756 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.146 0.854 48 H 0.097 0.903 49 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 0.798 2.923 -17.464 17.725 hybrid contribution -0.237 -0.594 1.289 1.439 sum 0.561 2.328 -16.175 16.352 Atomic orbital electron populations 1.22028 0.93454 1.03122 1.02154 1.20833 0.95440 0.97356 0.84591 0.88548 1.45917 1.66608 1.14823 1.08819 1.20670 0.77580 0.87429 0.84439 1.90642 1.50547 1.16031 1.84940 1.21755 1.03121 0.99748 0.93139 1.20898 0.97703 0.97641 0.92584 1.21716 0.96148 0.98927 0.98996 1.21501 1.00383 0.98576 0.95021 1.21556 0.96318 1.00123 0.97756 1.21507 0.97003 0.99247 0.97814 1.21606 1.00606 0.98237 0.94846 1.19946 0.83126 0.87438 0.85288 1.90516 1.56403 1.14225 1.84633 1.43382 1.52376 1.06564 1.11820 1.19747 1.30001 1.08573 0.84667 0.87452 1.25302 0.96455 0.96902 0.98528 1.69597 1.31496 1.27340 1.23926 0.85745 0.79237 0.79358 0.79298 1.20184 1.20944 1.19321 1.20719 0.90910 0.85432 1.01432 1.23491 0.90036 0.79808 0.73052 1.90610 1.62425 1.39474 1.46196 1.84514 1.32638 1.35097 1.82293 0.91934 0.91328 0.92062 0.75599 0.88888 0.89011 0.90333 0.92843 0.89739 0.92003 0.92382 0.92473 0.92246 0.91998 0.92296 0.92003 0.91999 0.91619 0.85432 0.90306 0.75144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.48 37.16 0.35 -2.38 16 2 C 0.13 2.41 2.34 -69.08 -0.16 2.25 16 3 H 0.10 1.83 5.40 -51.93 -0.28 1.55 16 4 N -0.71 -11.54 5.06 -54.94 -0.28 -11.82 16 5 C 0.51 7.57 7.51 -10.99 -0.08 7.48 16 6 O -0.54 -9.42 13.63 5.56 0.08 -9.34 16 7 C -0.14 -1.47 5.17 -27.88 -0.14 -1.61 16 8 C -0.07 -0.72 1.84 -90.62 -0.17 -0.89 16 9 C -0.12 -1.31 4.94 -26.73 -0.13 -1.44 16 10 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 11 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 12 C -0.12 -0.94 5.92 -26.73 -0.16 -1.09 16 13 C -0.12 -0.96 5.20 -26.73 -0.14 -1.10 16 14 C 0.45 10.66 6.71 -10.99 -0.07 10.59 16 15 O -0.57 -14.94 15.80 5.55 0.09 -14.85 16 16 N -0.42 -10.39 2.13 -116.10 -0.25 -10.64 16 17 C -0.30 -8.07 9.32 -14.94 -0.14 -8.21 16 18 H 0.11 2.98 7.41 -52.49 -0.39 2.59 16 19 C 0.03 0.78 5.02 -17.47 -0.09 0.70 16 20 N -0.88 -22.63 8.66 55.50 0.48 -22.15 16 21 Si 0.94 20.16 29.58 -169.99 -5.03 15.14 16 22 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 C 0.14 3.06 5.07 -5.19 -0.03 3.04 16 26 C 0.50 10.88 4.75 36.00 0.17 11.05 16 27 O -0.50 -12.73 15.55 -18.75 -0.29 -13.02 16 28 O -0.53 -9.65 13.42 -39.25 -0.53 -10.17 16 29 H 0.06 1.19 8.13 -51.93 -0.42 0.77 16 30 H 0.07 1.32 5.13 -51.93 -0.27 1.06 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.41 6.38 7.85 -40.82 -0.32 6.06 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.94 7.95 -51.93 -0.41 0.52 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 1.14 5.95 -51.93 -0.31 0.83 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 47 H 0.13 2.85 6.56 -51.93 -0.34 2.51 16 48 H 0.08 1.46 5.83 -51.93 -0.30 1.16 16 49 H 0.39 5.45 9.10 45.56 0.41 5.86 16 LS Contribution 385.61 15.07 5.81 5.81 Total: -1.00 -32.34 385.61 -7.86 -40.20 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -6.84 Total: 14.88 kcal Atomic # 6 Polarization: 17.07 SS G_CDS: -1.11 Total: 15.96 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: -0.04 Total: -44.60 kcal Atomic # 8 Polarization: -46.74 SS G_CDS: -0.66 Total: -47.39 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.14 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.34 -7.86 -40.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736631162.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.892 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds