Wall clock time and date at job start Tue Mar 31 2020 23:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47173 * 2 1 4 4 N 1.46491 * 109.47016 * 239.99432 * 2 1 3 5 5 C 1.34783 * 120.00000 * 85.00474 * 4 2 1 6 6 O 1.21277 * 120.00045 * 359.97438 * 5 4 2 7 7 C 1.50695 * 119.99969 * 179.97438 * 5 4 2 8 8 C 1.53003 * 109.47266 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47153 * 295.00745 * 8 7 5 10 10 C 1.53003 * 109.47153 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47296 * 59.99226 * 10 9 8 12 12 C 1.52999 * 109.47147 * 300.00431 * 11 10 9 13 13 C 1.52996 * 109.47300 * 60.00100 * 12 11 10 14 14 C 1.50701 * 109.46743 * 119.99390 * 2 1 3 15 15 O 1.21291 * 119.99522 * 89.70041 * 14 2 1 16 16 N 1.34776 * 120.00452 * 269.70200 * 14 2 1 17 17 C 1.37096 * 120.00257 * 185.27502 * 16 14 2 18 18 H 1.07997 * 120.00055 * 18.66310 * 17 16 14 19 19 C 1.38945 * 119.99954 * 198.67108 * 17 16 14 20 20 N 1.31413 * 120.00175 * 15.61272 * 19 17 16 21 21 Si 1.86800 * 119.99949 * 195.61629 * 19 17 16 22 22 H 1.48506 * 109.47081 * 89.99878 * 21 19 17 23 23 H 1.48508 * 109.47231 * 209.99761 * 21 19 17 24 24 H 1.48494 * 109.47037 * 329.99770 * 21 19 17 25 25 C 1.46504 * 119.99591 * 5.27204 * 16 14 2 26 26 C 1.50699 * 109.47130 * 87.18849 * 25 16 14 27 27 O 1.20828 * 120.00063 * 359.97438 * 26 25 16 28 28 O 1.34228 * 120.00099 * 179.97438 * 26 25 16 29 29 H 1.08997 * 109.47410 * 187.95463 * 1 2 3 30 30 H 1.09001 * 109.47252 * 307.96065 * 1 2 3 31 31 H 1.09000 * 109.46638 * 67.95587 * 1 2 3 32 32 H 0.97001 * 120.00007 * 265.00161 * 4 2 1 33 33 H 1.08997 * 109.47770 * 300.00303 * 7 5 4 34 34 H 1.09007 * 109.47141 * 60.00263 * 7 5 4 35 35 H 1.09001 * 109.46679 * 55.00312 * 8 7 5 36 36 H 1.09001 * 109.46975 * 299.99386 * 9 8 7 37 37 H 1.09000 * 109.47598 * 59.99310 * 9 8 7 38 38 H 1.09001 * 109.46679 * 299.99567 * 10 9 8 39 39 H 1.08996 * 109.47228 * 179.97438 * 10 9 8 40 40 H 1.08996 * 109.47005 * 180.02562 * 11 10 9 41 41 H 1.09001 * 109.46978 * 60.00525 * 11 10 9 42 42 H 1.08993 * 109.47184 * 299.99299 * 12 11 10 43 43 H 1.09000 * 109.46511 * 179.97438 * 12 11 10 44 44 H 1.08996 * 109.47154 * 179.97438 * 13 12 11 45 45 H 1.09001 * 109.47110 * 59.99731 * 13 12 11 46 46 H 0.97003 * 119.99930 * 179.97438 * 20 19 17 47 47 H 1.09003 * 109.46723 * 207.18695 * 25 16 14 48 48 H 1.08999 * 109.47378 * 327.18732 * 25 16 14 49 49 H 0.96700 * 117.00312 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 2.1471 -0.0184 -2.3571 6 8 1.8583 1.1582 -2.4118 7 6 2.6500 -0.7288 -3.5873 8 6 2.7008 0.2541 -4.7588 9 6 1.2816 0.7084 -5.1053 10 6 1.3324 1.6907 -6.2773 11 6 1.9589 1.0034 -7.4921 12 6 3.3781 0.5491 -7.1455 13 6 3.3273 -0.4333 -5.9737 14 6 2.0323 -0.7103 1.2306 15 8 2.2292 -1.9068 1.2022 16 7 2.2626 -0.0161 2.3626 17 6 2.8210 -0.6404 3.4480 18 1 3.3476 -1.5748 3.3217 19 6 2.7093 -0.0710 4.7105 20 7 1.8291 0.8805 4.9266 21 14 3.8105 -0.6580 6.1005 22 1 5.0569 0.1491 6.1192 23 1 3.0998 -0.5011 7.3950 24 1 4.1501 -2.0886 5.8926 25 6 1.9163 1.4056 2.4332 26 6 0.4794 1.5519 2.8630 27 8 -0.1873 0.5694 3.0869 28 8 -0.0600 2.7737 2.9972 29 1 -0.3634 -1.0177 0.1422 30 1 -0.3634 0.6321 0.8102 31 1 -0.3632 0.3857 -0.9526 32 1 2.2490 -1.6319 -1.1524 33 1 3.6492 -1.1207 -3.3978 34 1 1.9777 -1.5511 -3.8324 35 1 3.3018 1.1199 -4.4808 36 1 0.6806 -0.1574 -5.3834 37 1 0.8351 1.1977 -4.2397 38 1 1.9335 2.5566 -5.9997 39 1 0.3213 2.0141 -6.5244 40 1 1.9955 1.7034 -8.3268 41 1 1.3578 0.1375 -7.7698 42 1 3.9792 1.4149 -6.8680 43 1 3.8242 0.0590 -8.0109 44 1 4.3384 -0.7573 -5.7271 45 1 2.7262 -1.2992 -6.2513 46 1 1.7509 1.2778 5.8081 47 1 2.5641 1.9018 3.1560 48 1 2.0503 1.8614 1.4522 49 1 -0.9853 2.8171 3.2747 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736631162.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:20 Heat of formation + Delta-G solvation = -198.109894 kcal Electronic energy + Delta-G solvation = -31132.333020 eV Core-core repulsion = 26864.946977 eV Total energy + Delta-G solvation = -4267.386043 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.67415 -40.89952 -40.01099 -38.93657 -37.15401 -36.40721 -35.84173 -33.90962 -33.59457 -31.69108 -31.51112 -29.56347 -28.00856 -27.26925 -24.93532 -23.43754 -22.91966 -22.58362 -21.22508 -20.84177 -20.51697 -19.05625 -18.84711 -18.48614 -17.68066 -17.26406 -17.16320 -16.48960 -16.30710 -16.24955 -16.07847 -15.77145 -15.45972 -15.18203 -14.92876 -14.84958 -14.51535 -14.28000 -13.98946 -13.59600 -13.53241 -13.47431 -13.24216 -13.15729 -12.97097 -12.80507 -12.77909 -12.66464 -12.45009 -12.35124 -12.17478 -12.00466 -11.91439 -11.78380 -11.51488 -11.27340 -11.22476 -10.99765 -10.86315 -10.63609 -10.48090 -10.09367 -9.93674 -8.46745 -6.04148 1.32967 1.41614 1.53516 1.62708 1.69641 1.82443 1.99821 2.32898 2.54986 2.89769 3.06088 3.59241 3.73936 3.78863 3.86364 3.89603 4.09249 4.13359 4.28588 4.30410 4.39314 4.52148 4.57591 4.62648 4.64117 4.68372 4.71621 4.73487 4.81395 4.88720 4.90459 4.92835 5.03068 5.10738 5.24852 5.30966 5.33381 5.37661 5.39865 5.40535 5.48211 5.62798 5.68278 5.92681 5.98398 6.29428 6.57445 7.01588 7.20234 7.27342 7.46082 7.78227 8.59241 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019697 B = 0.002651 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.222413 B =10560.895866 C =11349.623359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.138 3.862 3 H 0.099 0.901 4 N -0.710 5.710 5 C 0.511 3.489 6 O -0.569 6.569 7 C -0.131 4.131 8 C -0.067 4.067 9 C -0.120 4.120 10 C -0.117 4.117 11 C -0.117 4.117 12 C -0.119 4.119 13 C -0.111 4.111 14 C 0.447 3.553 15 O -0.608 6.608 16 N -0.435 5.435 17 C -0.337 4.337 18 H 0.085 0.915 19 C -0.001 4.001 20 N -0.894 5.894 21 Si 0.999 3.001 22 H -0.260 1.260 23 H -0.281 1.281 24 H -0.276 1.276 25 C 0.139 3.861 26 C 0.503 3.497 27 O -0.541 6.541 28 O -0.521 6.521 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.411 0.589 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.276 0.724 47 H 0.121 0.879 48 H 0.109 0.891 49 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.198 3.126 -18.905 19.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.029 3.971 3 H 0.117 0.883 4 N -0.363 5.363 5 C 0.300 3.700 6 O -0.449 6.449 7 C -0.170 4.170 8 C -0.086 4.086 9 C -0.157 4.157 10 C -0.155 4.155 11 C -0.154 4.154 12 C -0.156 4.156 13 C -0.148 4.148 14 C 0.237 3.763 15 O -0.494 6.494 16 N -0.153 5.153 17 C -0.464 4.464 18 H 0.103 0.897 19 C -0.202 4.202 20 N -0.533 5.533 21 Si 0.822 3.178 22 H -0.185 1.185 23 H -0.206 1.206 24 H -0.201 1.201 25 C 0.014 3.986 26 C 0.346 3.654 27 O -0.430 6.430 28 O -0.333 6.333 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.248 0.752 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.139 0.861 48 H 0.127 0.873 49 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 1.269 3.211 -18.829 19.143 hybrid contribution -0.454 -0.588 1.699 1.855 sum 0.815 2.623 -17.130 17.349 Atomic orbital electron populations 1.21927 0.92831 1.02262 1.02653 1.20585 0.95681 0.97003 0.83824 0.88289 1.45947 1.66987 1.14977 1.08406 1.21427 0.76563 0.87199 0.84793 1.90638 1.51552 1.17382 1.85299 1.21829 1.04427 0.99920 0.90837 1.20874 0.97175 0.97104 0.93437 1.21667 0.96474 0.99268 0.98292 1.21494 1.00545 0.98090 0.95368 1.21539 0.96412 1.00399 0.97093 1.21526 0.96810 0.99091 0.98215 1.21578 1.01087 0.98371 0.93775 1.20665 0.82139 0.87314 0.86220 1.90476 1.57717 1.15811 1.85425 1.43531 1.52406 1.07683 1.11692 1.19701 1.31695 1.08810 0.86198 0.89742 1.26048 0.97205 0.96855 1.00085 1.69683 1.31697 1.27526 1.24425 0.84842 0.78060 0.78572 0.76290 1.18462 1.20632 1.20076 1.20821 0.90819 0.84096 1.02910 1.23420 0.89908 0.80074 0.72046 1.90598 1.63385 1.40938 1.48062 1.84442 1.34352 1.32813 1.81704 0.93076 0.92328 0.90258 0.75169 0.86950 0.86813 0.92309 0.91955 0.92713 0.93098 0.92195 0.91623 0.91593 0.92624 0.90789 0.91056 0.90917 0.91393 0.86146 0.87306 0.72697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.04 9.48 71.98 0.68 -4.36 16 2 C 0.14 5.26 2.34 44.25 0.10 5.37 16 3 H 0.10 3.71 5.40 -2.39 -0.01 3.70 16 4 N -0.71 -22.75 5.06 -446.10 -2.26 -25.00 16 5 C 0.51 14.62 7.51 87.65 0.66 15.28 16 6 O -0.57 -19.50 13.63 -3.02 -0.04 -19.54 16 7 C -0.13 -2.52 5.17 29.85 0.15 -2.37 16 8 C -0.07 -1.28 1.84 -10.79 -0.02 -1.30 16 9 C -0.12 -2.48 4.94 30.59 0.15 -2.33 16 10 C -0.12 -2.13 5.92 30.59 0.18 -1.95 16 11 C -0.12 -1.65 5.92 30.59 0.18 -1.47 16 12 C -0.12 -1.60 5.92 30.59 0.18 -1.42 16 13 C -0.11 -1.55 5.20 30.59 0.16 -1.39 16 14 C 0.45 21.42 6.71 87.66 0.59 22.01 16 15 O -0.61 -32.58 15.80 -3.07 -0.05 -32.63 16 16 N -0.43 -21.77 2.13 -639.60 -1.36 -23.14 16 17 C -0.34 -18.41 9.32 84.04 0.78 -17.63 16 18 H 0.08 4.89 7.41 -2.91 -0.02 4.87 16 19 C 0.00 -0.03 5.02 84.92 0.43 0.40 16 20 N -0.89 -45.64 8.66 21.66 0.19 -45.45 16 21 Si 1.00 41.34 29.58 68.60 2.03 43.37 16 22 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 23 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 24 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 25 C 0.14 6.02 5.07 85.63 0.43 6.45 16 26 C 0.50 21.90 4.75 71.24 0.34 22.24 16 27 O -0.54 -27.65 15.55 21.96 0.34 -27.31 16 28 O -0.52 -18.02 13.42 -51.40 -0.69 -18.71 16 29 H 0.05 1.96 8.13 -2.39 -0.02 1.94 16 30 H 0.06 2.25 5.13 -2.39 -0.01 2.24 16 31 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.41 12.70 7.85 -92.71 -0.73 11.97 16 33 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.06 1.37 7.95 -2.39 -0.02 1.35 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.05 1.47 5.95 -2.39 -0.01 1.46 16 38 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.28 13.39 8.31 -92.71 -0.77 12.62 16 47 H 0.12 5.38 6.56 -2.39 -0.02 5.36 16 48 H 0.11 3.96 5.83 -2.39 -0.01 3.95 16 49 H 0.41 10.73 9.10 -74.06 -0.67 10.05 16 Total: -1.00 -70.92 385.61 2.75 -68.17 By element: Atomic # 1 Polarization: 43.10 SS G_CDS: -0.41 Total: 42.69 kcal Atomic # 6 Polarization: 32.54 SS G_CDS: 5.00 Total: 37.54 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -3.43 Total: -93.59 kcal Atomic # 8 Polarization: -97.74 SS G_CDS: -0.44 Total: -98.18 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -70.92 2.75 -68.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736631162.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.938 kcal (2) G-P(sol) polarization free energy of solvation -70.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds