Wall clock time and date at job start Tue Mar 31 2020 23:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21283 * 120.00232 * 2 1 4 4 N 1.34775 * 120.00132 * 180.02562 * 2 1 3 5 5 C 1.48148 * 127.83584 * 0.02669 * 4 2 1 6 6 C 1.54388 * 104.61766 * 140.39380 * 5 4 2 7 7 C 1.54282 * 104.96405 * 23.86366 * 6 5 4 8 8 C 1.53001 * 110.34478 * 118.86798 * 7 6 5 9 9 C 1.50693 * 110.34475 * 241.02452 * 7 6 5 10 10 O 1.20832 * 119.99958 * 358.52829 * 9 7 6 11 11 O 1.34226 * 120.00221 * 178.51998 * 9 7 6 12 12 C 1.45197 * 117.00395 * 180.02562 * 11 9 7 13 13 H 1.09008 * 109.47240 * 30.00085 * 12 11 9 14 14 C 1.52996 * 109.47240 * 270.00693 * 12 11 9 15 15 C 1.50697 * 109.47660 * 150.00396 * 12 11 9 16 16 O 1.21287 * 119.99590 * 16.02378 * 15 12 11 17 17 N 1.34774 * 120.00164 * 196.03211 * 15 12 11 18 18 C 1.46500 * 120.00330 * 5.36003 * 17 15 12 19 19 C 1.46501 * 119.99877 * 185.36349 * 17 15 12 20 20 C 1.50699 * 109.47580 * 89.99797 * 19 17 15 21 21 H 1.08004 * 119.99567 * 359.97438 * 20 19 17 22 22 C 1.37870 * 120.00306 * 180.02562 * 20 19 17 23 23 N 1.31509 * 120.00436 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99979 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47034 * 89.99574 * 24 22 20 26 26 H 1.48498 * 109.46964 * 209.99555 * 24 22 20 27 27 H 1.48500 * 109.47161 * 329.99653 * 24 22 20 28 28 C 1.48142 * 127.84211 * 179.97438 * 4 2 1 29 29 H 1.09003 * 109.46936 * 239.99783 * 1 2 3 30 30 H 1.08998 * 109.46926 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47155 * 119.99904 * 1 2 3 32 32 H 1.08993 * 110.40965 * 21.60542 * 5 4 2 33 33 H 1.09008 * 110.50480 * 259.22362 * 5 4 2 34 34 H 1.09003 * 110.34041 * 264.99033 * 6 5 4 35 35 H 1.09006 * 110.34168 * 142.73543 * 6 5 4 36 36 H 1.09003 * 109.46445 * 60.00286 * 8 7 6 37 37 H 1.08995 * 109.47484 * 300.00563 * 8 7 6 38 38 H 1.08996 * 109.46976 * 180.02562 * 8 7 6 39 39 H 1.08999 * 109.47742 * 66.13273 * 14 12 11 40 40 H 1.08999 * 109.47274 * 186.13598 * 14 12 11 41 41 H 1.08998 * 109.47264 * 306.13078 * 14 12 11 42 42 H 1.08998 * 109.46980 * 84.82554 * 18 17 15 43 43 H 1.09001 * 109.46979 * 204.82886 * 18 17 15 44 44 H 1.09000 * 109.46936 * 324.82326 * 18 17 15 45 45 H 1.09004 * 109.47398 * 209.99967 * 19 17 15 46 46 H 1.08997 * 109.47317 * 329.99649 * 19 17 15 47 47 H 0.96998 * 120.01048 * 180.02562 * 23 22 20 48 48 H 1.09002 * 110.40926 * 100.82062 * 28 4 2 49 49 H 1.08999 * 110.40921 * 338.39554 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.6220 -2.5392 -0.0017 6 6 2.5413 -3.3336 -0.9542 7 6 3.8775 -2.5622 -0.9536 8 6 5.0056 -3.4528 -0.4292 9 6 4.2002 -2.0723 -2.3417 10 8 3.4597 -2.3305 -3.2609 11 8 5.3102 -1.3490 -2.5570 12 6 5.5574 -0.9102 -3.9188 13 1 4.6068 -0.7700 -4.4335 14 6 6.3838 -1.9677 -4.6534 15 6 6.3140 0.3929 -3.8973 16 8 6.8662 0.7567 -2.8805 17 7 6.3769 1.1540 -5.0077 18 6 5.6142 0.7751 -6.1998 19 6 7.2081 2.3603 -5.0228 20 6 8.5966 2.0080 -5.4905 21 1 8.8362 0.9873 -5.7501 22 6 9.5614 2.9882 -5.5859 23 7 9.2700 4.2309 -5.2693 24 14 11.2829 2.5511 -6.1650 25 1 11.3565 2.6828 -7.6424 26 1 12.2649 3.4708 -5.5365 27 1 11.5956 1.1524 -5.7765 28 6 3.6484 -1.3693 -0.0011 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3633 1.0277 0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 0.5992 -2.5327 -0.3782 33 1 1.6543 -2.9655 1.0011 34 1 2.1175 -3.3566 -1.9582 35 1 2.6887 -4.3471 -0.5809 36 1 5.1022 -4.3307 -1.0681 37 1 4.7765 -3.7678 0.5888 38 1 5.9416 -2.8944 -0.4344 39 1 5.7937 -2.8773 -4.7648 40 1 6.6618 -1.5921 -5.6381 41 1 7.2848 -2.1871 -4.0806 42 1 4.5973 1.1587 -6.1176 43 1 6.0909 1.1960 -7.0851 44 1 5.5872 -0.3113 -6.2836 45 1 6.7716 3.0939 -5.7007 46 1 7.2586 2.7793 -4.0178 47 1 9.9486 4.9206 -5.3368 48 1 3.9992 -1.6113 1.0021 49 1 4.1544 -0.4801 -0.3773 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747091357.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:01 Heat of formation + Delta-G solvation = -146.723139 kcal Electronic energy + Delta-G solvation = -31181.194624 eV Core-core repulsion = 26916.036878 eV Total energy + Delta-G solvation = -4265.157746 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.29056 -39.93833 -38.96159 -37.74252 -36.35852 -34.86284 -33.63543 -32.78802 -31.56145 -30.22734 -29.96734 -27.78034 -26.51161 -26.06808 -24.97129 -24.18596 -23.28323 -21.90870 -19.91096 -19.56937 -18.80435 -17.71569 -17.27296 -16.72280 -16.57033 -16.38369 -16.04687 -15.75946 -15.59250 -15.16238 -14.66443 -14.50869 -14.21415 -13.82983 -13.55424 -13.44536 -13.36561 -13.03437 -12.89551 -12.64905 -12.59374 -12.52571 -12.36620 -12.30012 -12.13607 -12.06623 -11.88676 -11.73277 -11.50278 -11.38279 -11.21959 -11.07737 -10.92084 -10.71735 -10.56609 -10.47453 -10.16982 -10.07762 -9.64920 -9.06407 -8.89416 -8.44458 -7.70014 -6.04848 -4.10485 2.05847 2.36389 2.45378 2.64840 3.25890 3.29799 3.36742 3.41185 3.83420 3.91007 4.09550 4.41855 4.45465 4.47949 4.62581 4.73284 4.85647 4.86803 4.93898 5.02426 5.05496 5.11000 5.11642 5.26351 5.29401 5.30208 5.35671 5.41467 5.50947 5.53905 5.65589 5.66401 5.71376 5.72721 5.80290 5.87733 5.95083 6.07452 6.23299 6.40726 7.00687 7.25596 7.43051 7.48241 7.65377 7.90874 7.93469 8.20793 8.31210 8.85225 9.00342 9.54510 11.03266 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015955 B = 0.002831 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.548729 B = 9888.170548 C =10544.769246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.529 3.471 3 O -0.534 6.534 4 N -0.630 5.630 5 C 0.102 3.898 6 C -0.129 4.129 7 C -0.066 4.066 8 C -0.138 4.138 9 C 0.474 3.526 10 O -0.508 6.508 11 O -0.320 6.320 12 C 0.070 3.930 13 H 0.101 0.899 14 C -0.164 4.164 15 C 0.510 3.490 16 O -0.518 6.518 17 N -0.596 5.596 18 C 0.074 3.926 19 C 0.246 3.754 20 C -0.530 4.530 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.893 5.893 24 Si 0.899 3.101 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.113 3.887 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.047 0.953 43 H 0.081 0.919 44 H 0.058 0.942 45 H 0.036 0.964 46 H 0.047 0.953 47 H 0.264 0.736 48 H 0.091 0.909 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.121 -19.381 8.737 27.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.319 3.681 3 O -0.410 6.410 4 N -0.366 5.366 5 C -0.021 4.021 6 C -0.167 4.167 7 C -0.069 4.069 8 C -0.196 4.196 9 C 0.316 3.684 10 O -0.396 6.396 11 O -0.235 6.235 12 C 0.012 3.988 13 H 0.118 0.882 14 C -0.221 4.221 15 C 0.294 3.706 16 O -0.394 6.394 17 N -0.330 5.330 18 C -0.070 4.070 19 C 0.127 3.873 20 C -0.568 4.568 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.532 5.532 24 Si 0.727 3.273 25 H -0.206 1.206 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.010 4.010 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.100 0.900 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.109 0.891 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.684 -18.318 8.993 27.003 hybrid contribution 0.905 -0.280 -0.677 1.164 sum -16.780 -18.598 8.316 26.393 Atomic orbital electron populations 1.21890 0.91074 1.05640 1.04116 1.20541 0.90384 0.81734 0.75483 1.90807 1.70679 1.30364 1.49143 1.49065 1.07381 1.05909 1.74224 1.22438 0.98384 0.81413 0.99833 1.22794 0.92530 0.98736 1.02656 1.21405 0.98243 0.97346 0.89875 1.21873 0.97222 0.98871 1.01609 1.23348 0.78494 0.75091 0.91430 1.90598 1.49199 1.54729 1.45052 1.86609 1.41397 1.63458 1.32003 1.22695 1.00664 0.94867 0.80577 0.88158 1.22154 1.00771 0.97782 1.01381 1.19733 0.81939 0.84404 0.84528 1.90702 1.45728 1.71662 1.31272 1.48065 1.46512 1.27342 1.11081 1.21826 0.95541 0.99911 0.89719 1.19369 0.88611 0.80182 0.99138 1.21419 0.95442 0.94928 1.45054 0.92374 1.24941 0.98959 0.94852 0.95320 1.69930 1.34522 1.00667 1.48032 0.86482 0.83860 0.78416 0.78573 1.20624 1.21043 1.19867 1.22404 0.81715 0.97825 0.99012 0.89412 0.88742 0.89362 0.89688 0.90422 0.88237 0.88871 0.91372 0.90537 0.90248 0.91355 0.89437 0.90581 0.93491 0.90033 0.92328 0.94649 0.93537 0.92629 0.89115 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 9.30 36.00 0.33 -0.91 16 2 C 0.53 6.64 8.02 -10.99 -0.09 6.55 16 3 O -0.53 -9.65 17.35 5.55 0.10 -9.56 16 4 N -0.63 -6.63 3.32 -169.33 -0.56 -7.19 16 5 C 0.10 0.63 6.92 -2.41 -0.02 0.61 16 6 C -0.13 -0.92 6.24 -25.33 -0.16 -1.08 16 7 C -0.07 -0.66 0.97 -154.28 -0.15 -0.81 16 8 C -0.14 -1.05 8.20 37.16 0.30 -0.75 16 9 C 0.47 6.76 6.50 36.00 0.23 6.99 16 10 O -0.51 -7.81 14.48 -18.75 -0.27 -8.08 16 11 O -0.32 -5.47 9.17 -45.74 -0.42 -5.89 16 12 C 0.07 1.23 2.14 -27.89 -0.06 1.17 16 13 H 0.10 1.65 6.31 -51.92 -0.33 1.32 16 14 C -0.16 -2.37 9.19 37.16 0.34 -2.03 16 15 C 0.51 11.42 6.95 -10.99 -0.08 11.34 16 16 O -0.52 -13.91 16.13 -13.54 -0.22 -14.12 16 17 N -0.60 -13.21 2.86 -182.96 -0.52 -13.74 16 18 C 0.07 1.22 9.79 59.85 0.59 1.81 16 19 C 0.25 6.60 5.18 -5.19 -0.03 6.57 16 20 C -0.53 -15.11 9.39 -34.44 -0.32 -15.43 16 21 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 22 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 24 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 28 C 0.11 1.28 6.13 -2.42 -0.01 1.26 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.73 8.12 -51.93 -0.42 0.30 16 31 H 0.09 0.52 7.95 -51.93 -0.41 0.11 16 32 H 0.08 0.37 7.30 -51.93 -0.38 -0.01 16 33 H 0.08 0.31 8.14 -51.92 -0.42 -0.12 16 34 H 0.10 0.89 6.47 -51.93 -0.34 0.55 16 35 H 0.09 0.41 7.71 -51.93 -0.40 0.01 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.39 8.10 -51.93 -0.42 -0.03 16 38 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 1.22 6.33 -51.93 -0.33 0.89 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 1.34 8.03 -51.93 -0.42 0.92 16 44 H 0.06 0.81 4.92 -51.93 -0.26 0.55 16 45 H 0.04 0.95 8.07 -51.93 -0.42 0.54 16 46 H 0.05 1.42 7.35 -51.93 -0.38 1.04 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.09 0.80 7.83 -51.93 -0.41 0.40 16 49 H 0.10 1.52 7.43 -51.93 -0.39 1.13 16 LS Contribution 402.82 15.07 6.07 6.07 Total: -1.00 -38.85 402.82 -7.12 -45.96 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.79 Total: -1.21 kcal Atomic # 6 Polarization: 16.18 SS G_CDS: 0.79 Total: 16.97 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: -0.35 Total: -47.03 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.81 Total: -37.65 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -38.85 -7.12 -45.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747091357.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.761 kcal (2) G-P(sol) polarization free energy of solvation -38.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds