Wall clock time and date at job start Tue Mar 31 2020 23:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21283 * 120.00232 * 2 1 4 4 N 1.34775 * 120.00132 * 180.02562 * 2 1 3 5 5 C 1.48148 * 127.83584 * 0.02669 * 4 2 1 6 6 C 1.54388 * 104.61766 * 140.39380 * 5 4 2 7 7 C 1.54282 * 104.96405 * 23.86366 * 6 5 4 8 8 C 1.53001 * 110.34478 * 118.86798 * 7 6 5 9 9 C 1.50693 * 110.34475 * 241.02452 * 7 6 5 10 10 O 1.20832 * 119.99958 * 358.52829 * 9 7 6 11 11 O 1.34226 * 120.00221 * 178.51998 * 9 7 6 12 12 C 1.45197 * 117.00395 * 180.02562 * 11 9 7 13 13 H 1.09008 * 109.47240 * 30.00085 * 12 11 9 14 14 C 1.52996 * 109.47240 * 270.00693 * 12 11 9 15 15 C 1.50697 * 109.47660 * 150.00396 * 12 11 9 16 16 O 1.21287 * 119.99590 * 16.02378 * 15 12 11 17 17 N 1.34774 * 120.00164 * 196.03211 * 15 12 11 18 18 C 1.46500 * 120.00330 * 5.36003 * 17 15 12 19 19 C 1.46501 * 119.99877 * 185.36349 * 17 15 12 20 20 C 1.50699 * 109.47580 * 89.99797 * 19 17 15 21 21 H 1.08004 * 119.99567 * 359.97438 * 20 19 17 22 22 C 1.37870 * 120.00306 * 180.02562 * 20 19 17 23 23 N 1.31509 * 120.00436 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99979 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47034 * 89.99574 * 24 22 20 26 26 H 1.48498 * 109.46964 * 209.99555 * 24 22 20 27 27 H 1.48500 * 109.47161 * 329.99653 * 24 22 20 28 28 C 1.48142 * 127.84211 * 179.97438 * 4 2 1 29 29 H 1.09003 * 109.46936 * 239.99783 * 1 2 3 30 30 H 1.08998 * 109.46926 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47155 * 119.99904 * 1 2 3 32 32 H 1.08993 * 110.40965 * 21.60542 * 5 4 2 33 33 H 1.09008 * 110.50480 * 259.22362 * 5 4 2 34 34 H 1.09003 * 110.34041 * 264.99033 * 6 5 4 35 35 H 1.09006 * 110.34168 * 142.73543 * 6 5 4 36 36 H 1.09003 * 109.46445 * 60.00286 * 8 7 6 37 37 H 1.08995 * 109.47484 * 300.00563 * 8 7 6 38 38 H 1.08996 * 109.46976 * 180.02562 * 8 7 6 39 39 H 1.08999 * 109.47742 * 66.13273 * 14 12 11 40 40 H 1.08999 * 109.47274 * 186.13598 * 14 12 11 41 41 H 1.08998 * 109.47264 * 306.13078 * 14 12 11 42 42 H 1.08998 * 109.46980 * 84.82554 * 18 17 15 43 43 H 1.09001 * 109.46979 * 204.82886 * 18 17 15 44 44 H 1.09000 * 109.46936 * 324.82326 * 18 17 15 45 45 H 1.09004 * 109.47398 * 209.99967 * 19 17 15 46 46 H 1.08997 * 109.47317 * 329.99649 * 19 17 15 47 47 H 0.96998 * 120.01048 * 180.02562 * 23 22 20 48 48 H 1.09002 * 110.40926 * 100.82062 * 28 4 2 49 49 H 1.08999 * 110.40921 * 338.39554 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.6220 -2.5392 -0.0017 6 6 2.5413 -3.3336 -0.9542 7 6 3.8775 -2.5622 -0.9536 8 6 5.0056 -3.4528 -0.4292 9 6 4.2002 -2.0723 -2.3417 10 8 3.4597 -2.3305 -3.2609 11 8 5.3102 -1.3490 -2.5570 12 6 5.5574 -0.9102 -3.9188 13 1 4.6068 -0.7700 -4.4335 14 6 6.3838 -1.9677 -4.6534 15 6 6.3140 0.3929 -3.8973 16 8 6.8662 0.7567 -2.8805 17 7 6.3769 1.1540 -5.0077 18 6 5.6142 0.7751 -6.1998 19 6 7.2081 2.3603 -5.0228 20 6 8.5966 2.0080 -5.4905 21 1 8.8362 0.9873 -5.7501 22 6 9.5614 2.9882 -5.5859 23 7 9.2700 4.2309 -5.2693 24 14 11.2829 2.5511 -6.1650 25 1 11.3565 2.6828 -7.6424 26 1 12.2649 3.4708 -5.5365 27 1 11.5956 1.1524 -5.7765 28 6 3.6484 -1.3693 -0.0011 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3633 1.0277 0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 0.5992 -2.5327 -0.3782 33 1 1.6543 -2.9655 1.0011 34 1 2.1175 -3.3566 -1.9582 35 1 2.6887 -4.3471 -0.5809 36 1 5.1022 -4.3307 -1.0681 37 1 4.7765 -3.7678 0.5888 38 1 5.9416 -2.8944 -0.4344 39 1 5.7937 -2.8773 -4.7648 40 1 6.6618 -1.5921 -5.6381 41 1 7.2848 -2.1871 -4.0806 42 1 4.5973 1.1587 -6.1176 43 1 6.0909 1.1960 -7.0851 44 1 5.5872 -0.3113 -6.2836 45 1 6.7716 3.0939 -5.7007 46 1 7.2586 2.7793 -4.0178 47 1 9.9486 4.9206 -5.3368 48 1 3.9992 -1.6113 1.0021 49 1 4.1544 -0.4801 -0.3773 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747091357.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:00 Heat of formation + Delta-G solvation = -173.807789 kcal Electronic energy + Delta-G solvation = -31182.369102 eV Core-core repulsion = 26916.036878 eV Total energy + Delta-G solvation = -4266.332224 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.37169 -41.12499 -40.44527 -38.78996 -37.60800 -36.75538 -34.92259 -34.44877 -33.01389 -30.91625 -30.62793 -29.76026 -27.65931 -27.21582 -26.30221 -25.46141 -24.53689 -23.28384 -20.91199 -20.55693 -20.30806 -18.79264 -18.73751 -18.42013 -17.92965 -17.48997 -17.43356 -17.03298 -16.74500 -16.44692 -16.29043 -16.12536 -15.26785 -14.91977 -14.77850 -14.47186 -14.42988 -14.24158 -14.04023 -13.75780 -13.66074 -13.61713 -13.42705 -13.32223 -13.29471 -13.16094 -13.15639 -13.04065 -12.90654 -12.74258 -12.54906 -12.53628 -12.24534 -12.16853 -12.00864 -11.76407 -11.68437 -11.55208 -11.07796 -10.70398 -10.67731 -9.90111 -9.59370 -8.26045 -6.42043 0.92762 1.19883 1.35331 1.39220 1.48290 1.51834 1.54408 1.88650 2.25692 2.39395 3.03833 3.15364 3.30238 3.34887 3.53203 3.66891 3.75291 3.76356 3.91777 4.19678 4.20962 4.30796 4.37160 4.43032 4.47569 4.51174 4.55869 4.57980 4.64394 4.68148 4.77249 4.80318 4.82187 4.87936 4.89972 5.00804 5.02886 5.11296 5.14415 5.18973 5.29538 5.32525 5.46497 5.73247 5.98372 6.42084 6.46553 6.55982 6.66645 7.03848 7.13230 7.31066 8.82032 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015955 B = 0.002831 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.548729 B = 9888.170548 C =10544.769246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.513 3.487 3 O -0.610 6.610 4 N -0.631 5.631 5 C 0.100 3.900 6 C -0.121 4.121 7 C -0.063 4.063 8 C -0.134 4.134 9 C 0.466 3.534 10 O -0.520 6.520 11 O -0.343 6.343 12 C 0.080 3.920 13 H 0.113 0.887 14 C -0.155 4.155 15 C 0.498 3.502 16 O -0.578 6.578 17 N -0.601 5.601 18 C 0.068 3.932 19 C 0.259 3.741 20 C -0.545 4.545 21 H 0.060 0.940 22 C 0.006 3.994 23 N -0.930 5.930 24 Si 0.974 3.026 25 H -0.261 1.261 26 H -0.282 1.282 27 H -0.269 1.269 28 C 0.108 3.892 29 H 0.123 0.877 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.133 0.867 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.054 0.946 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.029 0.971 46 H -0.005 1.005 47 H 0.268 0.732 48 H 0.117 0.883 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.586 -23.559 8.454 31.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.306 3.694 3 O -0.492 6.492 4 N -0.365 5.365 5 C -0.021 4.021 6 C -0.159 4.159 7 C -0.065 4.065 8 C -0.192 4.192 9 C 0.309 3.691 10 O -0.408 6.408 11 O -0.258 6.258 12 C 0.022 3.978 13 H 0.131 0.869 14 C -0.212 4.212 15 C 0.285 3.715 16 O -0.458 6.458 17 N -0.333 5.333 18 C -0.074 4.074 19 C 0.138 3.862 20 C -0.584 4.584 21 H 0.078 0.922 22 C -0.193 4.193 23 N -0.569 5.569 24 Si 0.797 3.203 25 H -0.186 1.186 26 H -0.208 1.208 27 H -0.194 1.194 28 C -0.016 4.016 29 H 0.141 0.859 30 H 0.104 0.896 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.102 0.898 35 H 0.151 0.849 36 H 0.100 0.900 37 H 0.130 0.870 38 H 0.074 0.926 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.111 0.889 45 H 0.047 0.953 46 H 0.013 0.987 47 H 0.077 0.923 48 H 0.135 0.865 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -19.211 -22.581 8.666 30.888 hybrid contribution 1.290 1.022 -0.559 1.738 sum -17.920 -21.559 8.107 29.183 Atomic orbital electron populations 1.21907 0.86834 1.06079 1.06718 1.21596 0.92464 0.81202 0.74181 1.90770 1.72441 1.33154 1.52846 1.49268 1.07182 1.07435 1.72648 1.22840 0.99130 0.78345 1.01764 1.22874 0.90284 1.00378 1.02372 1.21638 1.00957 0.97234 0.86641 1.21924 0.95107 0.98294 1.03842 1.24343 0.77283 0.74203 0.93232 1.90575 1.49123 1.55194 1.45921 1.86638 1.43167 1.64305 1.31724 1.22534 1.00718 0.92829 0.81712 0.86937 1.22150 1.00340 0.97771 1.00960 1.20702 0.81479 0.85808 0.83483 1.90659 1.48438 1.73320 1.33391 1.48074 1.46173 1.25996 1.13097 1.22146 0.95664 1.02279 0.87327 1.18865 0.89505 0.82052 0.95773 1.21676 0.96297 0.95121 1.45260 0.92162 1.25939 1.03604 0.94606 0.95162 1.70066 1.36167 1.01839 1.48840 0.85327 0.77914 0.78113 0.78927 1.18573 1.20751 1.19394 1.22430 0.82427 0.96224 1.00475 0.85868 0.89572 0.87224 0.87238 0.86863 0.89833 0.84927 0.90002 0.87026 0.92638 0.88431 0.88595 0.91449 0.91439 0.89768 0.88914 0.95345 0.98653 0.92300 0.86486 0.93893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.30 71.23 0.66 -1.37 16 2 C 0.51 13.07 8.02 87.66 0.70 13.78 16 3 O -0.61 -23.96 17.35 -3.04 -0.05 -24.01 16 4 N -0.63 -12.62 3.32 -808.01 -2.68 -15.30 16 5 C 0.10 0.81 6.92 86.53 0.60 1.40 16 6 C -0.12 -1.26 6.24 31.50 0.20 -1.06 16 7 C -0.06 -1.16 0.97 -52.03 -0.05 -1.21 16 8 C -0.13 -1.73 8.20 71.98 0.59 -1.14 16 9 C 0.47 13.17 6.50 71.23 0.46 13.63 16 10 O -0.52 -15.39 14.48 21.95 0.32 -15.07 16 11 O -0.34 -12.17 9.17 -45.17 -0.41 -12.59 16 12 C 0.08 2.83 2.14 29.85 0.06 2.90 16 13 H 0.11 3.64 6.31 -2.38 -0.02 3.63 16 14 C -0.16 -4.29 9.19 71.98 0.66 -3.63 16 15 C 0.50 23.49 6.95 87.66 0.61 24.10 16 16 O -0.58 -33.55 16.13 15.21 0.25 -33.30 16 17 N -0.60 -27.68 2.86 -851.13 -2.43 -30.11 16 18 C 0.07 2.19 9.79 127.77 1.25 3.44 16 19 C 0.26 14.74 5.18 85.63 0.44 15.18 16 20 C -0.55 -32.07 9.39 25.60 0.24 -31.83 16 21 H 0.06 3.43 7.81 -2.91 -0.02 3.41 16 22 C 0.01 0.35 5.46 84.65 0.46 0.81 16 23 N -0.93 -57.72 13.29 21.44 0.28 -57.44 16 24 Si 0.97 45.36 29.54 68.60 2.03 47.38 16 25 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 26 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 27 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 28 C 0.11 2.46 6.13 86.53 0.53 2.99 16 29 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.09 1.28 8.12 -2.39 -0.02 1.26 16 31 H 0.11 0.96 7.95 -2.39 -0.02 0.94 16 32 H 0.11 0.41 7.30 -2.39 -0.02 0.39 16 33 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16 34 H 0.08 1.21 6.47 -2.39 -0.02 1.20 16 35 H 0.13 0.39 7.71 -2.38 -0.02 0.37 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.11 0.66 8.10 -2.39 -0.02 0.64 16 38 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 39 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.10 2.47 6.33 -2.39 -0.02 2.46 16 41 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.08 2.70 8.03 -2.39 -0.02 2.68 16 44 H 0.09 2.37 4.92 -2.39 -0.01 2.36 16 45 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 46 H 0.00 -0.31 7.35 -2.39 -0.02 -0.33 16 47 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 48 H 0.12 1.98 7.83 -2.39 -0.02 1.96 16 49 H 0.04 1.47 7.43 -2.39 -0.02 1.45 16 Total: -1.00 -94.95 402.82 5.67 -89.28 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.95 Total: 13.16 kcal Atomic # 6 Polarization: 30.57 SS G_CDS: 7.43 Total: 38.00 kcal Atomic # 7 Polarization: -98.02 SS G_CDS: -4.83 Total: -102.85 kcal Atomic # 8 Polarization: -85.07 SS G_CDS: 0.10 Total: -84.97 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -94.95 5.67 -89.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747091357.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.526 kcal (2) G-P(sol) polarization free energy of solvation -94.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds