Wall clock time and date at job start Tue Mar 31 2020 23:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21281 * 120.00301 * 2 1 4 4 N 1.34779 * 119.99828 * 179.97438 * 2 1 3 5 5 C 1.47484 * 127.03376 * 0.02640 * 4 2 1 6 6 C 1.54007 * 107.08285 * 154.51684 * 5 4 2 7 7 C 1.54611 * 105.04344 * 1.30849 * 6 5 4 8 8 C 1.53002 * 110.73830 * 263.32628 * 7 6 5 9 9 C 1.50699 * 110.74144 * 140.18510 * 7 6 5 10 10 O 1.20828 * 119.99997 * 0.02562 * 9 7 6 11 11 O 1.34230 * 120.00406 * 179.97438 * 9 7 6 12 12 C 1.45198 * 117.00088 * 180.02562 * 11 9 7 13 13 H 1.09000 * 109.46826 * 329.99839 * 12 11 9 14 14 C 1.53001 * 109.47427 * 89.99987 * 12 11 9 15 15 C 1.50700 * 109.47172 * 210.00072 * 12 11 9 16 16 O 1.21290 * 119.99778 * 359.97438 * 15 12 11 17 17 N 1.34774 * 120.00421 * 180.02562 * 15 12 11 18 18 C 1.46499 * 119.99717 * 359.97438 * 17 15 12 19 19 C 1.46493 * 120.00292 * 180.02562 * 17 15 12 20 20 C 1.50705 * 109.47396 * 89.99497 * 19 17 15 21 21 H 1.08000 * 119.99921 * 0.02562 * 20 19 17 22 22 C 1.37869 * 119.99935 * 179.97438 * 20 19 17 23 23 N 1.31513 * 120.00364 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 120.00058 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46899 * 90.00042 * 24 22 20 26 26 H 1.48490 * 109.47368 * 210.00056 * 24 22 20 27 27 H 1.48499 * 109.46942 * 330.00689 * 24 22 20 28 28 C 1.48118 * 127.03167 * 179.97438 * 4 2 1 29 29 H 1.09002 * 109.47581 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47662 * 300.00778 * 1 2 3 31 31 H 1.09004 * 109.47104 * 60.00363 * 1 2 3 32 32 H 1.09000 * 109.91322 * 35.15492 * 5 4 2 33 33 H 1.08997 * 109.91328 * 273.88125 * 5 4 2 34 34 H 1.09004 * 110.32250 * 120.19906 * 6 5 4 35 35 H 1.09000 * 110.32734 * 242.31170 * 6 5 4 36 36 H 1.09005 * 109.46760 * 60.00772 * 8 7 6 37 37 H 1.08998 * 109.47298 * 179.97438 * 8 7 6 38 38 H 1.08990 * 109.47449 * 300.00356 * 8 7 6 39 39 H 1.08996 * 109.46872 * 180.02562 * 14 12 11 40 40 H 1.09002 * 109.46812 * 299.99807 * 14 12 11 41 41 H 1.09000 * 109.46775 * 59.99843 * 14 12 11 42 42 H 1.08999 * 109.47392 * 90.00171 * 18 17 15 43 43 H 1.09001 * 109.47282 * 210.00347 * 18 17 15 44 44 H 1.09001 * 109.47236 * 330.00068 * 18 17 15 45 45 H 1.09000 * 109.47534 * 209.99570 * 19 17 15 46 46 H 1.09004 * 109.47194 * 329.99901 * 19 17 15 47 47 H 0.97000 * 120.00463 * 180.02562 * 23 22 20 48 48 H 1.08996 * 110.66106 * 100.88924 * 28 4 2 49 49 H 1.08999 * 110.80476 * 337.83675 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.6053 -2.5252 0.0006 6 6 2.6526 -3.4604 -0.6322 7 6 3.8603 -2.5505 -0.9548 8 6 3.8234 -2.0991 -2.4162 9 6 5.1565 -3.2557 -0.6488 10 8 5.1430 -4.3824 -0.2127 11 8 6.3262 -2.6325 -0.8618 12 6 7.5346 -3.3725 -0.5451 13 1 7.3322 -4.0668 0.2705 14 6 7.9922 -4.1540 -1.7783 15 6 8.6180 -2.4111 -0.1292 16 8 8.3938 -1.2194 -0.1028 17 7 9.8363 -2.8752 0.2124 18 6 10.1072 -4.3146 0.1800 19 6 10.8892 -1.9406 0.6173 20 6 10.8287 -1.7309 2.1084 21 1 10.0810 -2.2430 2.6959 22 6 11.7286 -0.8862 2.7228 23 7 12.6395 -0.2630 2.0075 24 14 11.6533 -0.6256 4.5711 25 1 12.5129 -1.6297 5.2479 26 1 12.1355 0.7400 4.8986 27 1 10.2515 -0.7804 5.0360 28 6 3.6509 -1.3486 0.0001 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.6892 -2.5401 -0.5899 33 1 1.3962 -2.8397 1.0230 34 1 2.9423 -4.2377 0.0749 35 1 2.2587 -3.9074 -1.5449 36 1 2.9044 -1.5429 -2.6015 37 1 4.6821 -1.4597 -2.6208 38 1 3.8570 -2.9726 -3.0673 39 1 8.8990 -4.7098 -1.5404 40 1 7.2086 -4.8494 -2.0791 41 1 8.1945 -3.4597 -2.5939 42 1 10.4790 -4.5922 -0.8062 43 1 10.8560 -4.5604 0.9330 44 1 9.1882 -4.8621 0.3893 45 1 11.8624 -2.3505 0.3472 46 1 10.7432 -0.9869 0.1101 47 1 13.2728 0.3311 2.4398 48 1 4.0094 -1.5862 1.0016 49 1 4.1505 -0.4597 -0.3851 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747091359.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:03 Heat of formation + Delta-G solvation = -142.081861 kcal Electronic energy + Delta-G solvation = -30821.463660 eV Core-core repulsion = 26556.507175 eV Total energy + Delta-G solvation = -4264.956485 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.28881 -40.08662 -39.04513 -37.79120 -36.40739 -34.97218 -33.53861 -32.87849 -31.54170 -30.24329 -30.03644 -27.69767 -26.84390 -26.28532 -24.84451 -24.05239 -23.31492 -21.95406 -19.94107 -19.58639 -18.88523 -17.87682 -17.32043 -16.79440 -16.54900 -16.26546 -16.25495 -15.57432 -15.54364 -15.18882 -14.72718 -14.58975 -14.16178 -14.07803 -13.86007 -13.51991 -13.32550 -13.03922 -12.94263 -12.86126 -12.65711 -12.52645 -12.45173 -12.20938 -12.14984 -12.11480 -11.85179 -11.69663 -11.43155 -11.36166 -11.18686 -11.14259 -10.92897 -10.74288 -10.59283 -10.54185 -10.17940 -10.10473 -9.66574 -9.06220 -8.93446 -8.45770 -7.75068 -6.06771 -4.11877 1.97389 2.28723 2.36118 2.71868 3.23663 3.29711 3.36905 3.41881 3.79403 3.85392 4.10775 4.38437 4.43199 4.43637 4.59844 4.70032 4.71592 4.81835 4.86398 4.95386 5.05506 5.05949 5.10246 5.27982 5.30269 5.37697 5.41762 5.47640 5.49599 5.51091 5.53678 5.60958 5.61929 5.67359 5.80703 5.84313 5.91909 5.95887 6.18804 6.35279 6.95872 7.19914 7.37470 7.44083 7.60992 7.86715 7.89044 8.18662 8.26699 8.82834 8.97575 9.53377 11.01400 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012230 B = 0.002882 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.846072 B = 9712.274502 C =11137.428766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.529 3.471 3 O -0.539 6.539 4 N -0.622 5.622 5 C 0.101 3.899 6 C -0.122 4.122 7 C -0.066 4.066 8 C -0.135 4.135 9 C 0.478 3.522 10 O -0.505 6.505 11 O -0.318 6.318 12 C 0.069 3.931 13 H 0.106 0.894 14 C -0.175 4.175 15 C 0.508 3.492 16 O -0.517 6.517 17 N -0.596 5.596 18 C 0.076 3.924 19 C 0.247 3.753 20 C -0.529 4.529 21 H 0.057 0.943 22 C 0.062 3.938 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.280 1.280 26 H -0.284 1.284 27 H -0.274 1.274 28 C 0.119 3.881 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.093 0.907 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.036 0.964 46 H 0.046 0.954 47 H 0.264 0.736 48 H 0.080 0.920 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.925 -10.930 -8.994 26.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.319 3.681 3 O -0.415 6.415 4 N -0.358 5.358 5 C -0.022 4.022 6 C -0.159 4.159 7 C -0.069 4.069 8 C -0.192 4.192 9 C 0.319 3.681 10 O -0.393 6.393 11 O -0.232 6.232 12 C 0.010 3.990 13 H 0.124 0.876 14 C -0.232 4.232 15 C 0.292 3.708 16 O -0.393 6.393 17 N -0.329 5.329 18 C -0.068 4.068 19 C 0.128 3.872 20 C -0.568 4.568 21 H 0.076 0.924 22 C -0.140 4.140 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.206 1.206 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.004 4.004 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.099 0.901 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -22.579 -9.802 -8.827 26.150 hybrid contribution 0.148 -0.227 1.183 1.213 sum -22.431 -10.028 -7.644 25.733 Atomic orbital electron populations 1.21878 0.91152 1.04349 1.05431 1.20518 0.90299 0.81776 0.75494 1.90784 1.70575 1.30430 1.49708 1.48855 1.07221 1.05866 1.73854 1.22191 0.97170 0.81332 1.01501 1.22656 0.92620 0.97614 1.03059 1.21527 0.89545 0.96535 0.99248 1.21787 1.04037 1.02144 0.91226 1.23198 0.85919 0.85021 0.73920 1.90631 1.87726 1.19240 1.41744 1.86619 1.13744 1.46103 1.76771 1.22662 0.82688 0.93594 1.00010 0.87643 1.22399 1.03298 1.00458 0.97057 1.19756 0.83119 0.88784 0.79144 1.90724 1.80106 1.16029 1.52407 1.48059 1.12077 1.07629 1.65166 1.21884 1.01612 0.81869 1.01443 1.19357 0.83737 0.88591 0.95499 1.21415 1.15737 1.27242 0.92416 0.92440 1.24928 0.95191 0.95267 0.98635 1.69924 1.18304 1.29329 1.35706 0.86485 0.78339 0.77539 0.85016 1.20604 1.21000 1.19874 1.22400 0.81400 0.97705 0.98905 0.90441 0.88571 0.88608 0.90005 0.90739 0.88158 0.89326 0.91017 0.90399 0.91592 0.88817 0.91408 0.90939 0.93011 0.90294 0.92329 0.94588 0.93609 0.92630 0.90133 0.87764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.01 10.22 36.00 0.37 -0.64 16 2 C 0.53 5.82 8.00 -10.99 -0.09 5.74 16 3 O -0.54 -8.69 17.31 5.56 0.10 -8.59 16 4 N -0.62 -6.09 3.20 -169.77 -0.54 -6.64 16 5 C 0.10 0.63 6.48 -2.98 -0.02 0.61 16 6 C -0.12 -0.90 5.91 -25.36 -0.15 -1.05 16 7 C -0.07 -0.69 0.90 -153.79 -0.14 -0.83 16 8 C -0.13 -1.22 8.43 37.16 0.31 -0.91 16 9 C 0.48 6.51 6.62 36.01 0.24 6.75 16 10 O -0.51 -7.39 14.66 -18.75 -0.27 -7.67 16 11 O -0.32 -5.17 9.25 -45.90 -0.42 -5.60 16 12 C 0.07 1.12 2.18 -27.88 -0.06 1.06 16 13 H 0.11 1.65 6.42 -51.93 -0.33 1.32 16 14 C -0.17 -2.19 9.18 37.16 0.34 -1.85 16 15 C 0.51 10.82 7.15 -10.99 -0.08 10.74 16 16 O -0.52 -13.47 16.08 -14.11 -0.23 -13.69 16 17 N -0.60 -12.53 2.86 -182.95 -0.52 -13.05 16 18 C 0.08 1.15 8.80 59.85 0.53 1.68 16 19 C 0.25 6.42 5.16 -5.19 -0.03 6.39 16 20 C -0.53 -15.04 9.39 -34.44 -0.32 -15.37 16 21 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 22 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 24 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 28 C 0.12 1.42 5.97 -2.13 -0.01 1.41 16 29 H 0.08 0.27 6.17 -51.93 -0.32 -0.05 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.30 6.94 -51.93 -0.36 -0.06 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.84 6.85 -51.93 -0.36 0.49 16 35 H 0.09 0.49 7.86 -51.93 -0.41 0.08 16 36 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 37 H 0.08 0.82 8.05 -51.93 -0.42 0.40 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 1.04 4.53 -51.93 -0.24 0.80 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.65 6.95 -51.93 -0.36 0.29 16 43 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 44 H 0.06 0.75 6.01 -51.93 -0.31 0.44 16 45 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 46 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 48 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 49 H 0.10 1.47 7.77 -51.93 -0.40 1.07 16 LS Contribution 399.57 15.07 6.02 6.02 Total: -1.00 -37.52 399.57 -7.02 -44.54 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -7.65 Total: -1.89 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: 0.79 Total: 15.42 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: -0.33 Total: -45.55 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -0.83 Total: -35.55 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.52 -7.02 -44.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747091359.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.542 kcal (2) G-P(sol) polarization free energy of solvation -37.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds