Wall clock time and date at job start Tue Mar 31 2020 23:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21281 * 120.00301 * 2 1 4 4 N 1.34779 * 119.99828 * 179.97438 * 2 1 3 5 5 C 1.47484 * 127.03376 * 0.02640 * 4 2 1 6 6 C 1.54007 * 107.08285 * 154.51684 * 5 4 2 7 7 C 1.54611 * 105.04344 * 1.30849 * 6 5 4 8 8 C 1.53002 * 110.73830 * 263.32628 * 7 6 5 9 9 C 1.50699 * 110.74144 * 140.18510 * 7 6 5 10 10 O 1.20828 * 119.99997 * 0.02562 * 9 7 6 11 11 O 1.34230 * 120.00406 * 179.97438 * 9 7 6 12 12 C 1.45198 * 117.00088 * 180.02562 * 11 9 7 13 13 H 1.09000 * 109.46826 * 329.99839 * 12 11 9 14 14 C 1.53001 * 109.47427 * 89.99987 * 12 11 9 15 15 C 1.50700 * 109.47172 * 210.00072 * 12 11 9 16 16 O 1.21290 * 119.99778 * 359.97438 * 15 12 11 17 17 N 1.34774 * 120.00421 * 180.02562 * 15 12 11 18 18 C 1.46499 * 119.99717 * 359.97438 * 17 15 12 19 19 C 1.46493 * 120.00292 * 180.02562 * 17 15 12 20 20 C 1.50705 * 109.47396 * 89.99497 * 19 17 15 21 21 H 1.08000 * 119.99921 * 0.02562 * 20 19 17 22 22 C 1.37869 * 119.99935 * 179.97438 * 20 19 17 23 23 N 1.31513 * 120.00364 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 120.00058 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46899 * 90.00042 * 24 22 20 26 26 H 1.48490 * 109.47368 * 210.00056 * 24 22 20 27 27 H 1.48499 * 109.46942 * 330.00689 * 24 22 20 28 28 C 1.48118 * 127.03167 * 179.97438 * 4 2 1 29 29 H 1.09002 * 109.47581 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47662 * 300.00778 * 1 2 3 31 31 H 1.09004 * 109.47104 * 60.00363 * 1 2 3 32 32 H 1.09000 * 109.91322 * 35.15492 * 5 4 2 33 33 H 1.08997 * 109.91328 * 273.88125 * 5 4 2 34 34 H 1.09004 * 110.32250 * 120.19906 * 6 5 4 35 35 H 1.09000 * 110.32734 * 242.31170 * 6 5 4 36 36 H 1.09005 * 109.46760 * 60.00772 * 8 7 6 37 37 H 1.08998 * 109.47298 * 179.97438 * 8 7 6 38 38 H 1.08990 * 109.47449 * 300.00356 * 8 7 6 39 39 H 1.08996 * 109.46872 * 180.02562 * 14 12 11 40 40 H 1.09002 * 109.46812 * 299.99807 * 14 12 11 41 41 H 1.09000 * 109.46775 * 59.99843 * 14 12 11 42 42 H 1.08999 * 109.47392 * 90.00171 * 18 17 15 43 43 H 1.09001 * 109.47282 * 210.00347 * 18 17 15 44 44 H 1.09001 * 109.47236 * 330.00068 * 18 17 15 45 45 H 1.09000 * 109.47534 * 209.99570 * 19 17 15 46 46 H 1.09004 * 109.47194 * 329.99901 * 19 17 15 47 47 H 0.97000 * 120.00463 * 180.02562 * 23 22 20 48 48 H 1.08996 * 110.66106 * 100.88924 * 28 4 2 49 49 H 1.08999 * 110.80476 * 337.83675 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.6053 -2.5252 0.0006 6 6 2.6526 -3.4604 -0.6322 7 6 3.8603 -2.5505 -0.9548 8 6 3.8234 -2.0991 -2.4162 9 6 5.1565 -3.2557 -0.6488 10 8 5.1430 -4.3824 -0.2127 11 8 6.3262 -2.6325 -0.8618 12 6 7.5346 -3.3725 -0.5451 13 1 7.3322 -4.0668 0.2705 14 6 7.9922 -4.1540 -1.7783 15 6 8.6180 -2.4111 -0.1292 16 8 8.3938 -1.2194 -0.1028 17 7 9.8363 -2.8752 0.2124 18 6 10.1072 -4.3146 0.1800 19 6 10.8892 -1.9406 0.6173 20 6 10.8287 -1.7309 2.1084 21 1 10.0810 -2.2430 2.6959 22 6 11.7286 -0.8862 2.7228 23 7 12.6395 -0.2630 2.0075 24 14 11.6533 -0.6256 4.5711 25 1 12.5129 -1.6297 5.2479 26 1 12.1355 0.7400 4.8986 27 1 10.2515 -0.7804 5.0360 28 6 3.6509 -1.3486 0.0001 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.6892 -2.5401 -0.5899 33 1 1.3962 -2.8397 1.0230 34 1 2.9423 -4.2377 0.0749 35 1 2.2587 -3.9074 -1.5449 36 1 2.9044 -1.5429 -2.6015 37 1 4.6821 -1.4597 -2.6208 38 1 3.8570 -2.9726 -3.0673 39 1 8.8990 -4.7098 -1.5404 40 1 7.2086 -4.8494 -2.0791 41 1 8.1945 -3.4597 -2.5939 42 1 10.4790 -4.5922 -0.8062 43 1 10.8560 -4.5604 0.9330 44 1 9.1882 -4.8621 0.3893 45 1 11.8624 -2.3505 0.3472 46 1 10.7432 -0.9869 0.1101 47 1 13.2728 0.3311 2.4398 48 1 4.0094 -1.5862 1.0016 49 1 4.1505 -0.4597 -0.3851 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747091359.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:03 Heat of formation + Delta-G solvation = -167.511470 kcal Electronic energy + Delta-G solvation = -30822.566370 eV Core-core repulsion = 26556.507175 eV Total energy + Delta-G solvation = -4266.059196 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.34476 -41.17424 -40.47834 -38.78706 -37.60836 -36.76231 -34.97505 -34.34310 -32.94576 -30.86594 -30.72378 -29.58738 -27.77454 -27.61836 -26.14950 -25.32529 -24.46965 -23.29037 -20.92329 -20.55753 -20.30367 -18.92844 -18.69421 -18.32653 -17.90800 -17.57610 -17.37923 -17.09912 -16.53629 -16.47584 -16.19493 -15.87172 -15.28435 -15.04414 -14.88193 -14.71270 -14.49976 -14.29483 -14.10486 -13.74219 -13.65183 -13.58373 -13.47445 -13.37409 -13.32075 -13.18857 -13.04369 -12.93369 -12.85708 -12.63345 -12.48169 -12.44923 -12.24727 -12.17182 -11.94509 -11.82929 -11.75795 -11.59365 -11.02580 -10.67688 -10.65551 -9.87830 -9.55025 -8.26966 -6.41644 0.88296 1.18665 1.33246 1.36914 1.46513 1.53509 1.58944 1.89214 2.28882 2.40749 3.03095 3.08604 3.24541 3.36873 3.55605 3.66857 3.76425 3.82312 3.85413 4.06156 4.15376 4.29746 4.40172 4.44617 4.50830 4.54281 4.60610 4.63014 4.64700 4.65941 4.73814 4.75680 4.85539 4.89112 4.92403 5.02415 5.05690 5.08895 5.11740 5.16400 5.22566 5.26531 5.47912 5.74933 6.00036 6.42793 6.46985 6.59412 6.67192 7.05224 7.17581 7.32798 8.80427 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012230 B = 0.002882 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.846072 B = 9712.274502 C =11137.428766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.519 3.481 3 O -0.605 6.605 4 N -0.619 5.619 5 C 0.099 3.901 6 C -0.114 4.114 7 C -0.062 4.062 8 C -0.130 4.130 9 C 0.476 3.524 10 O -0.512 6.512 11 O -0.341 6.341 12 C 0.078 3.922 13 H 0.116 0.884 14 C -0.166 4.166 15 C 0.497 3.503 16 O -0.581 6.581 17 N -0.599 5.599 18 C 0.067 3.933 19 C 0.260 3.740 20 C -0.547 4.547 21 H 0.051 0.949 22 C 0.010 3.990 23 N -0.926 5.926 24 Si 0.967 3.033 25 H -0.259 1.259 26 H -0.280 1.280 27 H -0.277 1.277 28 C 0.113 3.887 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.123 0.877 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.118 0.882 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.035 0.965 46 H -0.001 1.001 47 H 0.268 0.732 48 H 0.064 0.936 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.614 -14.159 -9.092 30.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.312 3.688 3 O -0.486 6.486 4 N -0.353 5.353 5 C -0.022 4.022 6 C -0.151 4.151 7 C -0.064 4.064 8 C -0.187 4.187 9 C 0.319 3.681 10 O -0.401 6.401 11 O -0.256 6.256 12 C 0.020 3.980 13 H 0.134 0.866 14 C -0.223 4.223 15 C 0.284 3.716 16 O -0.461 6.461 17 N -0.331 5.331 18 C -0.074 4.074 19 C 0.139 3.861 20 C -0.585 4.585 21 H 0.070 0.930 22 C -0.190 4.190 23 N -0.565 5.565 24 Si 0.791 3.209 25 H -0.184 1.184 26 H -0.206 1.206 27 H -0.202 1.202 28 C -0.011 4.011 29 H 0.130 0.870 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.141 0.859 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.137 0.863 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.131 0.869 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.108 0.892 45 H 0.053 0.947 46 H 0.017 0.983 47 H 0.077 0.923 48 H 0.083 0.917 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -25.285 -13.143 -8.934 29.864 hybrid contribution 1.003 0.761 1.202 1.741 sum -24.282 -12.382 -7.732 28.332 Atomic orbital electron populations 1.21917 0.86577 1.06881 1.06234 1.21582 0.92328 0.80932 0.73983 1.90753 1.72225 1.32848 1.52803 1.48979 1.06067 1.07421 1.72801 1.22502 0.97975 0.78560 1.03173 1.22722 0.91110 0.96940 1.04361 1.21645 0.89073 0.96223 0.99456 1.21772 1.03561 1.02744 0.90610 1.23816 0.85872 0.85089 0.73335 1.90612 1.87760 1.19606 1.42075 1.86642 1.14596 1.47248 1.77149 1.22564 0.81394 0.91857 1.02188 0.86627 1.22409 1.04807 1.00223 0.94827 1.20725 0.84012 0.88935 0.77900 1.90685 1.81338 1.19023 1.55026 1.48041 1.11163 1.09529 1.64400 1.22257 1.03343 0.78290 1.03516 1.18841 0.85175 0.87970 0.94098 1.21682 1.15673 1.27621 0.93568 0.93036 1.25833 0.94733 0.94800 1.03611 1.70035 1.18956 1.29818 1.37731 0.85433 0.78334 0.77996 0.79163 1.18402 1.20552 1.20159 1.22213 0.83294 0.97174 0.98412 0.86995 0.87964 0.87456 0.85944 0.89370 0.88869 0.86345 0.89822 0.92851 0.89342 0.86943 0.89024 0.91432 0.89504 0.90661 0.89231 0.94720 0.98281 0.92269 0.91738 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 10.22 71.24 0.73 -0.72 16 2 C 0.52 11.24 8.00 87.66 0.70 11.94 16 3 O -0.61 -20.69 17.31 -3.03 -0.05 -20.74 16 4 N -0.62 -11.57 3.20 -809.43 -2.59 -14.16 16 5 C 0.10 0.88 6.48 86.53 0.56 1.44 16 6 C -0.11 -1.32 5.91 31.48 0.19 -1.13 16 7 C -0.06 -1.24 0.90 -51.72 -0.05 -1.28 16 8 C -0.13 -2.22 8.43 71.98 0.61 -1.61 16 9 C 0.48 12.74 6.62 71.24 0.47 13.21 16 10 O -0.51 -14.11 14.66 21.96 0.32 -13.79 16 11 O -0.34 -11.36 9.25 -45.06 -0.42 -11.78 16 12 C 0.08 2.52 2.18 29.85 0.07 2.58 16 13 H 0.12 3.47 6.42 -2.39 -0.02 3.45 16 14 C -0.17 -3.79 9.18 71.98 0.66 -3.13 16 15 C 0.50 21.98 7.15 87.66 0.63 22.61 16 16 O -0.58 -32.43 16.08 15.74 0.25 -32.18 16 17 N -0.60 -25.73 2.86 -851.13 -2.43 -28.16 16 18 C 0.07 1.94 8.80 127.77 1.12 3.06 16 19 C 0.26 14.17 5.16 85.64 0.44 14.61 16 20 C -0.55 -32.08 9.39 25.60 0.24 -31.84 16 21 H 0.05 3.01 7.81 -2.91 -0.02 2.98 16 22 C 0.01 0.56 5.46 84.65 0.46 1.02 16 23 N -0.93 -56.58 13.29 21.44 0.28 -56.29 16 24 Si 0.97 45.80 29.54 68.60 2.03 47.83 16 25 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 26 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 27 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 28 C 0.11 2.86 5.97 86.73 0.52 3.38 16 29 H 0.11 0.24 6.17 -2.39 -0.01 0.22 16 30 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.12 0.17 6.94 -2.39 -0.02 0.16 16 33 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.09 1.28 6.85 -2.38 -0.02 1.27 16 35 H 0.12 0.72 7.86 -2.39 -0.02 0.70 16 36 H 0.08 1.23 8.08 -2.38 -0.02 1.21 16 37 H 0.05 1.18 8.05 -2.39 -0.02 1.16 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.11 2.11 4.53 -2.39 -0.01 2.10 16 40 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.09 1.92 6.95 -2.39 -0.02 1.91 16 43 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 44 H 0.09 2.03 6.01 -2.39 -0.01 2.02 16 45 H 0.03 1.87 8.07 -2.39 -0.02 1.85 16 46 H 0.00 -0.06 7.42 -2.38 -0.02 -0.08 16 47 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 48 H 0.06 1.78 8.04 -2.39 -0.02 1.76 16 49 H 0.07 2.20 7.77 -2.39 -0.02 2.18 16 Total: -1.00 -89.88 399.57 5.70 -84.18 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.95 Total: 10.95 kcal Atomic # 6 Polarization: 26.78 SS G_CDS: 7.35 Total: 34.13 kcal Atomic # 7 Polarization: -93.87 SS G_CDS: -4.74 Total: -98.61 kcal Atomic # 8 Polarization: -78.59 SS G_CDS: 0.11 Total: -78.48 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -89.88 5.70 -84.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747091359.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.327 kcal (2) G-P(sol) polarization free energy of solvation -89.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds