Wall clock time and date at job start Tue Mar 31 2020 23:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21280 * 120.00212 * 2 1 4 4 N 1.34782 * 119.99824 * 179.97438 * 2 1 3 5 5 C 1.48117 * 127.03305 * 359.96376 * 4 2 1 6 6 C 1.54936 * 103.25407 * 140.74125 * 5 4 2 7 7 C 1.54617 * 102.84100 * 37.37682 * 6 5 4 8 8 C 1.52997 * 110.32738 * 97.04373 * 7 6 5 9 9 C 1.50701 * 110.41252 * 219.21445 * 7 6 5 10 10 O 1.20831 * 120.00152 * 358.50548 * 9 7 6 11 11 O 1.34231 * 119.99967 * 178.50259 * 9 7 6 12 12 C 1.45200 * 116.99980 * 179.97438 * 11 9 7 13 13 H 1.09000 * 109.47288 * 330.00744 * 12 11 9 14 14 C 1.53003 * 109.46770 * 90.00282 * 12 11 9 15 15 C 1.50698 * 109.47310 * 210.00328 * 12 11 9 16 16 O 1.21286 * 119.99963 * 0.02562 * 15 12 11 17 17 N 1.34773 * 120.00225 * 180.02562 * 15 12 11 18 18 C 1.46502 * 119.99799 * 359.97438 * 17 15 12 19 19 C 1.46501 * 120.00289 * 180.02562 * 17 15 12 20 20 C 1.50701 * 109.47375 * 89.99575 * 19 17 15 21 21 H 1.07995 * 119.99665 * 0.02562 * 20 19 17 22 22 C 1.37875 * 119.99958 * 180.02562 * 20 19 17 23 23 N 1.31512 * 120.00277 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99893 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46942 * 90.00083 * 24 22 20 26 26 H 1.48497 * 109.47285 * 209.99894 * 24 22 20 27 27 H 1.48500 * 109.47253 * 330.00471 * 24 22 20 28 28 C 1.47481 * 127.03353 * 180.02562 * 4 2 1 29 29 H 1.09002 * 109.47255 * 240.00343 * 1 2 3 30 30 H 1.08999 * 109.46765 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.47004 * 120.00172 * 1 2 3 32 32 H 1.08998 * 110.65813 * 259.18077 * 5 4 2 33 33 H 1.09004 * 110.66391 * 22.13211 * 5 4 2 34 34 H 1.09004 * 110.74283 * 279.03569 * 6 5 4 35 35 H 1.09005 * 110.74158 * 155.71825 * 6 5 4 36 36 H 1.09002 * 109.47153 * 302.92444 * 8 7 6 37 37 H 1.09001 * 109.46832 * 182.92634 * 8 7 6 38 38 H 1.09004 * 109.47261 * 62.92616 * 8 7 6 39 39 H 1.09000 * 109.46837 * 60.00186 * 14 12 11 40 40 H 1.09003 * 109.46697 * 179.97438 * 14 12 11 41 41 H 1.08995 * 109.47147 * 299.99712 * 14 12 11 42 42 H 1.08995 * 109.46694 * 90.00368 * 18 17 15 43 43 H 1.09008 * 109.46786 * 209.99782 * 18 17 15 44 44 H 1.08999 * 109.47375 * 329.99943 * 18 17 15 45 45 H 1.08993 * 109.47623 * 210.00227 * 19 17 15 46 46 H 1.09005 * 109.46803 * 330.00158 * 19 17 15 47 47 H 0.96995 * 119.99980 * 179.97438 * 23 22 20 48 48 H 1.08997 * 109.91492 * 86.05530 * 28 4 2 49 49 H 1.08998 * 110.07390 * 324.86348 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.6029 -2.5310 0.0019 6 6 2.5389 -3.3145 -0.9524 7 6 3.9308 -2.7232 -0.6305 8 6 4.6724 -3.6200 0.3628 9 6 4.7381 -2.5621 -1.8928 10 8 4.2756 -2.9080 -2.9541 11 8 5.9712 -2.0344 -1.8381 12 6 6.6911 -1.9098 -3.0928 13 1 6.3765 -2.7017 -3.7725 14 6 6.3883 -0.5481 -3.7214 15 6 8.1715 -2.0266 -2.8364 16 8 8.5796 -2.1986 -1.7072 17 7 9.0420 -1.9401 -3.8616 18 6 8.5489 -1.7330 -5.2256 19 6 10.4811 -2.0543 -3.6124 20 6 10.8953 -3.4998 -3.7129 21 1 10.1601 -4.2575 -3.9401 22 6 12.2127 -3.8548 -3.5147 23 7 13.1079 -2.9320 -3.2375 24 14 12.7259 -5.6466 -3.6385 25 1 13.1124 -5.9551 -5.0388 26 1 13.8822 -5.8936 -2.7401 27 1 11.5912 -6.5156 -3.2354 28 6 3.6446 -1.3479 0.0011 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3633 1.0277 0.0005 31 1 -0.3633 -0.5138 -0.8899 32 1 1.6296 -2.9590 1.0040 33 1 0.5827 -2.5168 -0.3818 34 1 2.2721 -3.1293 -1.9929 35 1 2.5118 -4.3812 -0.7299 36 1 4.0719 -3.7372 1.2650 37 1 5.6288 -3.1644 0.6196 38 1 4.8448 -4.5971 -0.0884 39 1 6.7029 0.2438 -3.0417 40 1 6.9291 -0.4544 -4.6631 41 1 5.3176 -0.4636 -3.9069 42 1 8.4834 -0.6644 -5.4298 43 1 9.2350 -2.1970 -5.9343 44 1 7.5617 -2.1836 -5.3274 45 1 11.0257 -1.4680 -4.3524 46 1 10.7077 -1.6800 -2.6140 47 1 14.0346 -3.1819 -3.0977 48 1 4.0213 -1.3232 1.0236 49 1 4.1187 -0.5629 -0.5881 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747091361.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:06 Heat of formation + Delta-G solvation = -144.385694 kcal Electronic energy + Delta-G solvation = -30842.062871 eV Core-core repulsion = 26577.006484 eV Total energy + Delta-G solvation = -4265.056387 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.31275 -40.06717 -39.04875 -37.83483 -36.38555 -34.96826 -33.65712 -32.88970 -31.53192 -30.32994 -29.95867 -27.69284 -26.67639 -26.26319 -24.89518 -24.21668 -23.29099 -21.92919 -19.91456 -19.69992 -18.89583 -17.79552 -17.30222 -16.72130 -16.61935 -16.54041 -15.87114 -15.84392 -15.68561 -15.30959 -14.66576 -14.48925 -14.35160 -13.91837 -13.66333 -13.41634 -13.26197 -13.04696 -12.93467 -12.88752 -12.69155 -12.56504 -12.43202 -12.32325 -12.25052 -12.12453 -11.94442 -11.66235 -11.43830 -11.40738 -11.17843 -11.12200 -10.93937 -10.72982 -10.59686 -10.49499 -10.19815 -10.19029 -9.67381 -9.12040 -8.93105 -8.46919 -7.75002 -6.07734 -4.12832 2.03245 2.28417 2.35246 2.60250 3.23900 3.28344 3.35131 3.39967 3.79680 3.83822 4.03443 4.39658 4.40005 4.43240 4.59969 4.70111 4.79507 4.83160 4.83876 4.94518 4.97507 5.02912 5.07832 5.26828 5.27195 5.31628 5.37021 5.40548 5.43738 5.52993 5.62516 5.64030 5.65097 5.69105 5.78877 5.82497 5.98127 5.99488 6.20461 6.38244 6.96132 7.13173 7.37163 7.43963 7.63431 7.80374 7.88125 8.17971 8.26781 8.82238 8.97078 9.52223 11.00414 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019828 B = 0.002500 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.801436 B =11198.236907 C =11722.761908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.529 3.471 3 O -0.542 6.542 4 N -0.625 5.625 5 C 0.101 3.899 6 C -0.122 4.122 7 C -0.064 4.064 8 C -0.141 4.141 9 C 0.474 3.526 10 O -0.506 6.506 11 O -0.319 6.319 12 C 0.070 3.930 13 H 0.106 0.894 14 C -0.176 4.176 15 C 0.509 3.491 16 O -0.519 6.519 17 N -0.595 5.595 18 C 0.075 3.925 19 C 0.247 3.753 20 C -0.529 4.529 21 H 0.057 0.943 22 C 0.062 3.938 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.118 3.882 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.066 0.934 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.036 0.964 46 H 0.046 0.954 47 H 0.264 0.736 48 H 0.087 0.913 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.482 1.133 3.938 26.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.318 3.682 3 O -0.418 6.418 4 N -0.361 5.361 5 C -0.022 4.022 6 C -0.160 4.160 7 C -0.066 4.066 8 C -0.198 4.198 9 C 0.317 3.683 10 O -0.394 6.394 11 O -0.234 6.234 12 C 0.011 3.989 13 H 0.123 0.877 14 C -0.233 4.233 15 C 0.294 3.706 16 O -0.394 6.394 17 N -0.329 5.329 18 C -0.068 4.068 19 C 0.128 3.872 20 C -0.568 4.568 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.532 5.532 24 Si 0.727 3.273 25 H -0.206 1.206 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.005 4.005 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.105 0.895 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -25.875 1.667 4.252 26.275 hybrid contribution 0.414 -1.169 -0.395 1.301 sum -25.461 0.498 3.857 25.757 Atomic orbital electron populations 1.21895 0.91055 1.05603 1.04236 1.20534 0.90389 0.81730 0.75510 1.90763 1.70789 1.30532 1.49738 1.48878 1.07180 1.06115 1.73911 1.22633 0.98133 0.81362 1.00097 1.22891 0.90887 1.00438 1.01786 1.21401 0.95170 0.97902 0.92163 1.21925 1.01315 0.99054 0.97489 1.23322 0.80804 0.73355 0.90867 1.90627 1.70475 1.46796 1.31487 1.86603 1.27552 1.73271 1.35964 1.22650 0.91373 1.00584 0.84258 0.87682 1.22405 1.03035 0.95301 1.02560 1.19739 0.86207 0.78769 0.85932 1.90704 1.78902 1.47951 1.21884 1.48058 1.09247 1.70093 1.05508 1.21890 0.99736 1.00145 0.85063 1.19357 0.72102 0.97307 0.98425 1.21413 0.93723 0.92880 1.48739 0.92447 1.24935 0.96384 0.97810 0.94944 1.69926 1.02560 1.32896 1.47856 0.86482 0.78230 0.84776 0.77854 1.20599 1.21022 1.19898 1.22015 0.81339 0.95063 1.02057 0.89334 0.88790 0.89319 0.90161 0.89322 0.88570 0.88639 0.90683 0.89952 0.91223 0.90901 0.88792 0.91476 0.92983 0.90278 0.92325 0.94585 0.93610 0.92635 0.89475 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 9.25 36.01 0.33 -0.60 16 2 C 0.53 5.51 8.00 -10.98 -0.09 5.43 16 3 O -0.54 -8.28 17.43 5.56 0.10 -8.18 16 4 N -0.63 -5.70 3.29 -169.76 -0.56 -6.26 16 5 C 0.10 0.55 6.95 -2.13 -0.01 0.53 16 6 C -0.12 -0.91 5.97 -24.86 -0.15 -1.05 16 7 C -0.06 -0.66 0.90 -154.28 -0.14 -0.80 16 8 C -0.14 -1.27 8.15 37.16 0.30 -0.97 16 9 C 0.47 6.76 6.35 36.01 0.23 6.98 16 10 O -0.51 -7.86 14.66 -18.75 -0.27 -8.14 16 11 O -0.32 -5.35 9.32 -45.90 -0.43 -5.78 16 12 C 0.07 1.18 2.18 -27.88 -0.06 1.12 16 13 H 0.11 1.71 6.42 -51.93 -0.33 1.37 16 14 C -0.18 -2.41 9.18 37.16 0.34 -2.07 16 15 C 0.51 10.95 7.15 -10.99 -0.08 10.87 16 16 O -0.52 -13.42 16.08 -14.11 -0.23 -13.65 16 17 N -0.60 -12.65 2.86 -182.95 -0.52 -13.17 16 18 C 0.08 1.18 8.80 59.85 0.53 1.70 16 19 C 0.25 6.42 5.16 -5.19 -0.03 6.40 16 20 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 21 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 23 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 24 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 27 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.12 1.26 6.26 -2.97 -0.02 1.24 16 29 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.53 8.12 -51.93 -0.42 0.11 16 31 H 0.09 0.34 7.91 -51.93 -0.41 -0.07 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.29 7.23 -51.93 -0.38 -0.09 16 34 H 0.10 0.87 6.91 -51.93 -0.36 0.52 16 35 H 0.10 0.54 7.85 -51.93 -0.41 0.13 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.09 1.13 4.53 -51.93 -0.24 0.89 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.05 0.68 6.95 -51.93 -0.36 0.32 16 43 H 0.08 1.25 8.07 -51.92 -0.42 0.83 16 44 H 0.06 0.77 6.01 -51.93 -0.31 0.46 16 45 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 46 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.09 0.84 7.68 -51.93 -0.40 0.44 16 49 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 LS Contribution 400.80 15.07 6.04 6.04 Total: -1.00 -37.69 400.80 -7.16 -44.85 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -7.74 Total: -1.96 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: 0.74 Total: 15.17 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: -0.34 Total: -45.13 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -0.83 Total: -35.75 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.69 -7.16 -44.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747091361.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.540 kcal (2) G-P(sol) polarization free energy of solvation -37.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds