Wall clock time and date at job start Tue Mar 31 2020 23:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21280 * 120.00212 * 2 1 4 4 N 1.34782 * 119.99824 * 179.97438 * 2 1 3 5 5 C 1.48117 * 127.03305 * 359.96376 * 4 2 1 6 6 C 1.54936 * 103.25407 * 140.74125 * 5 4 2 7 7 C 1.54617 * 102.84100 * 37.37682 * 6 5 4 8 8 C 1.52997 * 110.32738 * 97.04373 * 7 6 5 9 9 C 1.50701 * 110.41252 * 219.21445 * 7 6 5 10 10 O 1.20831 * 120.00152 * 358.50548 * 9 7 6 11 11 O 1.34231 * 119.99967 * 178.50259 * 9 7 6 12 12 C 1.45200 * 116.99980 * 179.97438 * 11 9 7 13 13 H 1.09000 * 109.47288 * 330.00744 * 12 11 9 14 14 C 1.53003 * 109.46770 * 90.00282 * 12 11 9 15 15 C 1.50698 * 109.47310 * 210.00328 * 12 11 9 16 16 O 1.21286 * 119.99963 * 0.02562 * 15 12 11 17 17 N 1.34773 * 120.00225 * 180.02562 * 15 12 11 18 18 C 1.46502 * 119.99799 * 359.97438 * 17 15 12 19 19 C 1.46501 * 120.00289 * 180.02562 * 17 15 12 20 20 C 1.50701 * 109.47375 * 89.99575 * 19 17 15 21 21 H 1.07995 * 119.99665 * 0.02562 * 20 19 17 22 22 C 1.37875 * 119.99958 * 180.02562 * 20 19 17 23 23 N 1.31512 * 120.00277 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99893 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46942 * 90.00083 * 24 22 20 26 26 H 1.48497 * 109.47285 * 209.99894 * 24 22 20 27 27 H 1.48500 * 109.47253 * 330.00471 * 24 22 20 28 28 C 1.47481 * 127.03353 * 180.02562 * 4 2 1 29 29 H 1.09002 * 109.47255 * 240.00343 * 1 2 3 30 30 H 1.08999 * 109.46765 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.47004 * 120.00172 * 1 2 3 32 32 H 1.08998 * 110.65813 * 259.18077 * 5 4 2 33 33 H 1.09004 * 110.66391 * 22.13211 * 5 4 2 34 34 H 1.09004 * 110.74283 * 279.03569 * 6 5 4 35 35 H 1.09005 * 110.74158 * 155.71825 * 6 5 4 36 36 H 1.09002 * 109.47153 * 302.92444 * 8 7 6 37 37 H 1.09001 * 109.46832 * 182.92634 * 8 7 6 38 38 H 1.09004 * 109.47261 * 62.92616 * 8 7 6 39 39 H 1.09000 * 109.46837 * 60.00186 * 14 12 11 40 40 H 1.09003 * 109.46697 * 179.97438 * 14 12 11 41 41 H 1.08995 * 109.47147 * 299.99712 * 14 12 11 42 42 H 1.08995 * 109.46694 * 90.00368 * 18 17 15 43 43 H 1.09008 * 109.46786 * 209.99782 * 18 17 15 44 44 H 1.08999 * 109.47375 * 329.99943 * 18 17 15 45 45 H 1.08993 * 109.47623 * 210.00227 * 19 17 15 46 46 H 1.09005 * 109.46803 * 330.00158 * 19 17 15 47 47 H 0.96995 * 119.99980 * 179.97438 * 23 22 20 48 48 H 1.08997 * 109.91492 * 86.05530 * 28 4 2 49 49 H 1.08998 * 110.07390 * 324.86348 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.6029 -2.5310 0.0019 6 6 2.5389 -3.3145 -0.9524 7 6 3.9308 -2.7232 -0.6305 8 6 4.6724 -3.6200 0.3628 9 6 4.7381 -2.5621 -1.8928 10 8 4.2756 -2.9080 -2.9541 11 8 5.9712 -2.0344 -1.8381 12 6 6.6911 -1.9098 -3.0928 13 1 6.3765 -2.7017 -3.7725 14 6 6.3883 -0.5481 -3.7214 15 6 8.1715 -2.0266 -2.8364 16 8 8.5796 -2.1986 -1.7072 17 7 9.0420 -1.9401 -3.8616 18 6 8.5489 -1.7330 -5.2256 19 6 10.4811 -2.0543 -3.6124 20 6 10.8953 -3.4998 -3.7129 21 1 10.1601 -4.2575 -3.9401 22 6 12.2127 -3.8548 -3.5147 23 7 13.1079 -2.9320 -3.2375 24 14 12.7259 -5.6466 -3.6385 25 1 13.1124 -5.9551 -5.0388 26 1 13.8822 -5.8936 -2.7401 27 1 11.5912 -6.5156 -3.2354 28 6 3.6446 -1.3479 0.0011 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3633 1.0277 0.0005 31 1 -0.3633 -0.5138 -0.8899 32 1 1.6296 -2.9590 1.0040 33 1 0.5827 -2.5168 -0.3818 34 1 2.2721 -3.1293 -1.9929 35 1 2.5118 -4.3812 -0.7299 36 1 4.0719 -3.7372 1.2650 37 1 5.6288 -3.1644 0.6196 38 1 4.8448 -4.5971 -0.0884 39 1 6.7029 0.2438 -3.0417 40 1 6.9291 -0.4544 -4.6631 41 1 5.3176 -0.4636 -3.9069 42 1 8.4834 -0.6644 -5.4298 43 1 9.2350 -2.1970 -5.9343 44 1 7.5617 -2.1836 -5.3274 45 1 11.0257 -1.4680 -4.3524 46 1 10.7077 -1.6800 -2.6140 47 1 14.0346 -3.1819 -3.0977 48 1 4.0213 -1.3232 1.0236 49 1 4.1187 -0.5629 -0.5881 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747091361.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:05 Heat of formation + Delta-G solvation = -169.790495 kcal Electronic energy + Delta-G solvation = -30843.164506 eV Core-core repulsion = 26577.006484 eV Total energy + Delta-G solvation = -4266.158022 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.37780 -41.14502 -40.45887 -38.78942 -37.62847 -36.76921 -34.97897 -34.42125 -32.99032 -30.88629 -30.60735 -29.59295 -27.80814 -27.38547 -26.17135 -25.43872 -24.53048 -23.26292 -20.89046 -20.57058 -20.36416 -18.87274 -18.66295 -18.38307 -17.89571 -17.56620 -17.32882 -17.01965 -16.71656 -16.44294 -16.39649 -15.90440 -15.29763 -14.99118 -14.88510 -14.62993 -14.34715 -14.17568 -13.96519 -13.81922 -13.70739 -13.56828 -13.50181 -13.38519 -13.28972 -13.09217 -13.05362 -12.96103 -12.84965 -12.70223 -12.61605 -12.48478 -12.24342 -12.22056 -11.99529 -11.78890 -11.74929 -11.57023 -11.03373 -10.67501 -10.66642 -9.86107 -9.56166 -8.25714 -6.40613 0.90841 1.17786 1.35245 1.38272 1.48157 1.56105 1.56864 1.90228 2.26787 2.40176 3.04212 3.10315 3.29128 3.33231 3.49245 3.66364 3.75504 3.77475 3.86501 4.08306 4.26372 4.28002 4.41688 4.44129 4.49080 4.50396 4.57055 4.61419 4.62959 4.68446 4.75446 4.76899 4.81955 4.90289 4.91601 5.01974 5.04456 5.08977 5.14816 5.16754 5.25827 5.28100 5.47811 5.74729 6.00550 6.41405 6.47602 6.57343 6.67668 7.06415 7.15980 7.32660 8.81785 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019828 B = 0.002500 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.801436 B =11198.236907 C =11722.761908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.517 3.483 3 O -0.605 6.605 4 N -0.625 5.625 5 C 0.103 3.897 6 C -0.117 4.117 7 C -0.061 4.061 8 C -0.137 4.137 9 C 0.468 3.532 10 O -0.520 6.520 11 O -0.341 6.341 12 C 0.079 3.921 13 H 0.116 0.884 14 C -0.167 4.167 15 C 0.501 3.499 16 O -0.576 6.576 17 N -0.599 5.599 18 C 0.067 3.933 19 C 0.260 3.740 20 C -0.546 4.546 21 H 0.052 0.948 22 C 0.009 3.991 23 N -0.926 5.926 24 Si 0.969 3.031 25 H -0.262 1.262 26 H -0.280 1.280 27 H -0.274 1.274 28 C 0.117 3.883 29 H 0.119 0.881 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.121 0.879 34 H 0.080 0.920 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.033 0.967 46 H 0.000 1.000 47 H 0.268 0.732 48 H 0.094 0.906 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.585 -0.838 3.431 29.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.309 3.691 3 O -0.487 6.487 4 N -0.359 5.359 5 C -0.018 4.018 6 C -0.155 4.155 7 C -0.063 4.063 8 C -0.194 4.194 9 C 0.311 3.689 10 O -0.408 6.408 11 O -0.256 6.256 12 C 0.021 3.979 13 H 0.134 0.866 14 C -0.224 4.224 15 C 0.287 3.713 16 O -0.456 6.456 17 N -0.331 5.331 18 C -0.074 4.074 19 C 0.139 3.861 20 C -0.584 4.584 21 H 0.071 0.929 22 C -0.191 4.191 23 N -0.566 5.566 24 Si 0.793 3.207 25 H -0.187 1.187 26 H -0.205 1.205 27 H -0.199 1.199 28 C -0.007 4.007 29 H 0.137 0.863 30 H 0.107 0.893 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.139 0.861 34 H 0.098 0.902 35 H 0.139 0.861 36 H 0.129 0.871 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.133 0.867 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.106 0.894 45 H 0.051 0.949 46 H 0.019 0.981 47 H 0.077 0.923 48 H 0.112 0.888 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -29.029 -0.331 3.693 29.264 hybrid contribution 1.381 -0.537 -0.243 1.501 sum -27.648 -0.868 3.450 27.876 Atomic orbital electron populations 1.21924 0.86819 1.06232 1.06714 1.21549 0.92349 0.81015 0.74144 1.90732 1.72344 1.32845 1.52776 1.49037 1.06452 1.07566 1.72828 1.22958 0.98901 0.78591 1.01322 1.22961 0.88936 1.02123 1.01497 1.21574 0.96213 0.98057 0.90406 1.21936 1.00578 0.98282 0.98613 1.24229 0.79996 0.72357 0.92296 1.90602 1.70496 1.47384 1.32352 1.86627 1.28980 1.73920 1.36074 1.22514 0.87951 1.02719 0.84765 0.86646 1.22398 1.04182 0.92900 1.02923 1.20578 0.88273 0.77359 0.85044 1.90662 1.80270 1.50494 1.24155 1.48042 1.07549 1.69552 1.07983 1.22244 1.00899 1.02639 0.81654 1.18859 0.75235 0.96233 0.95750 1.21661 0.94059 0.93669 1.49058 0.92942 1.25857 0.96364 1.02545 0.94295 1.70042 1.03010 1.35143 1.48377 0.85401 0.77684 0.78910 0.78731 1.18669 1.20505 1.19877 1.21914 0.82805 0.94236 1.01755 0.86312 0.89270 0.86956 0.87285 0.86079 0.90169 0.86100 0.87051 0.92669 0.91181 0.91761 0.86652 0.90070 0.89768 0.90432 0.89397 0.94871 0.98148 0.92274 0.88813 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.25 71.24 0.66 -0.62 16 2 C 0.52 10.29 8.00 87.66 0.70 10.99 16 3 O -0.61 -19.21 17.43 -3.03 -0.05 -19.27 16 4 N -0.62 -10.35 3.29 -809.37 -2.66 -13.02 16 5 C 0.10 0.70 6.95 86.73 0.60 1.30 16 6 C -0.12 -1.40 5.97 31.81 0.19 -1.21 16 7 C -0.06 -1.18 0.90 -52.03 -0.05 -1.23 16 8 C -0.14 -2.33 8.15 71.98 0.59 -1.74 16 9 C 0.47 13.38 6.35 71.24 0.45 13.84 16 10 O -0.52 -15.82 14.66 21.95 0.32 -15.50 16 11 O -0.34 -11.84 9.32 -45.07 -0.42 -12.26 16 12 C 0.08 2.68 2.18 29.85 0.07 2.74 16 13 H 0.12 3.67 6.42 -2.39 -0.02 3.65 16 14 C -0.17 -4.45 9.18 71.98 0.66 -3.79 16 15 C 0.50 22.33 7.15 87.66 0.63 22.96 16 16 O -0.58 -31.70 16.08 15.75 0.25 -31.44 16 17 N -0.60 -26.00 2.86 -851.13 -2.43 -28.44 16 18 C 0.07 2.01 8.80 127.77 1.12 3.13 16 19 C 0.26 14.14 5.16 85.63 0.44 14.58 16 20 C -0.55 -31.67 9.39 25.60 0.24 -31.43 16 21 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 22 C 0.01 0.50 5.46 84.65 0.46 0.96 16 23 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 24 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 25 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 27 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 28 C 0.12 2.49 6.26 86.54 0.54 3.03 16 29 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.09 0.85 8.12 -2.39 -0.02 0.83 16 31 H 0.11 0.40 7.91 -2.39 -0.02 0.39 16 32 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.12 0.12 7.23 -2.39 -0.02 0.10 16 34 H 0.08 1.27 6.91 -2.39 -0.02 1.25 16 35 H 0.12 0.86 7.85 -2.38 -0.02 0.84 16 36 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.12 2.52 4.53 -2.39 -0.01 2.51 16 41 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.08 2.00 6.95 -2.39 -0.02 1.98 16 43 H 0.08 2.37 8.07 -2.38 -0.02 2.35 16 44 H 0.09 2.12 6.01 -2.39 -0.01 2.11 16 45 H 0.03 1.80 8.07 -2.39 -0.02 1.78 16 46 H 0.00 0.02 7.42 -2.38 -0.02 0.01 16 47 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 48 H 0.09 1.83 7.68 -2.39 -0.02 1.81 16 49 H 0.05 1.42 7.58 -2.39 -0.02 1.40 16 Total: -1.00 -89.21 400.80 5.58 -83.63 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.95 Total: 11.54 kcal Atomic # 6 Polarization: 26.21 SS G_CDS: 7.31 Total: 33.52 kcal Atomic # 7 Polarization: -92.39 SS G_CDS: -4.81 Total: -97.20 kcal Atomic # 8 Polarization: -78.58 SS G_CDS: 0.10 Total: -78.47 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -89.21 5.58 -83.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747091361.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.161 kcal (2) G-P(sol) polarization free energy of solvation -89.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds